mRNA_Ecto-sp13_S_contig1424.3290.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1424.3290.1
Unique NamemRNA_Ecto-sp13_S_contig1424.3290.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1424.3290.1 vs. uniprot
Match: A0A6H5KUS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS3_9PHAE)

HSP 1 Score: 589 bits (1519), Expect = 4.940e-208
Identity = 290/313 (92.65%), Postives = 302/313 (96.49%), Query Frame = 1
Query:   55 QGGLRPCVDKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCRVREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCVAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVLFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSIGSYDQCARLVSPVTWKAVAVLRHVHPKTQPGFERVACYREVPLGQEQDYEE-EDGNDNNKENGAAENNRIRAPSNASSLSLVMQSRAGGGGAGTKGVKGGRRTVPESIRKPKM 990
            +GGLRPC+DKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCR+REGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGC+AFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSL+YRV+FYSLAGKLVGRLEAYS ALGVKSMAWSP GTLLS+GSYDQCARLVSPVTWKAVAVLRHVHPKTQPGFE+VACYREVPLGQ+QDYEE EDG+DNNKENG A NNR+RAPSNASSLSLVMQSRAGGG  GTKGVKGGRR  PES  KPK+
Sbjct:   54 KGGLRPCLDKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCRIREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCIAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLEYRVMFYSLAGKLVGRLEAYSRALGVKSMAWSPAGTLLSVGSYDQCARLVSPVTWKAVAVLRHVHPKTQPGFEKVACYREVPLGQQQDYEEGEDGSDNNKENGGAGNNRMRAPSNASSLSLVMQSRAGGGAVGTKGVKGGRRPGPESTLKPKI 366          
BLAST of mRNA_Ecto-sp13_S_contig1424.3290.1 vs. uniprot
Match: D8LDM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM7_ECTSI)

HSP 1 Score: 580 bits (1494), Expect = 6.440e-206
Identity = 305/401 (76.06%), Postives = 312/401 (77.81%), Query Frame = 1
Query:    1 AVGKRLMVRDAMDGFEIVQGGLRPCVDKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCRVREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCVAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVLFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSIGSYDQCARLVSPVTWKAVAVLRHVHPKTQ----------------------------------------------------------------------PGFERVACYREVPLGQEQDYEEEDGNDNNKENGAAEN-NRIRAPSNASSLSLVMQSRAGGGGAGTKGVKGGRRTVPESIRKPKM 990
            AVGKRLMVRDAMDGFEIVQGGLRPC+DKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCR+REGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGC+AFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRV+FYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLS+GSYDQCARLVSPVTWKAVAVLRHVHPKTQ                                                                      PGFE+VACYREVPLGQEQDYEE                NR+RAPSNASSLSLVMQSRAGGGGAGTKGVKGGRRT PES  KPKM
Sbjct:   28 AVGKRLMVRDAMDGFEIVQGGLRPCLDKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCRIREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCIAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVMFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSVGSYDQCARLVSPVTWKAVAVLRHVHPKTQDVDITYAPALTGPIPSERPDPSKPHPRLGVGQIMSWSVDGRYLATRNDNMASALWVWDTEDLSLSSVVVQPGFEKVACYREVPLGQEQDYEEXXXXXXXXXXXXXXXXNRLRAPSNASSLSLVMQSRAGGGGAGTKGVKGGRRTGPESTLKPKM 428          
BLAST of mRNA_Ecto-sp13_S_contig1424.3290.1 vs. uniprot
Match: A0A067CYV4_SAPPC (ANAPC4_WD40 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CYV4_SAPPC)

HSP 1 Score: 239 bits (611), Expect = 2.600e-72
Identity = 118/265 (44.53%), Postives = 167/265 (63.02%), Query Frame = 1
Query:   13 RLMVRDAMDGFEIVQGGLRPCVDKIEALEWASDSD---LLLCAMYKRSLVEVMSVARPDWQCRVREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCVAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVLFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSIGSYDQCARLVSPVTWKAVAVLRH----VHPKTQPGFERVACYREVPLG 786
            RL +RDA     +VQ  +  C+D I +++WA   D   L+LCAMYKR+LV+V SV  P WQC++ EG+ G++ A W PD RH++T SDF +H +VWSL     + +RQPK     + FSPD   +AVA R +C+D L +YD  SWE +  F   + DL  V ++ DG  +C++DT L+YR+LFY+  G L+   EAY HALGVKS++WSP G  L++GSYD+  R++S + +K VA L H    V  + +P  + V  Y EV  G
Sbjct:   33 RLSIRDATLNMAVVQ--VYTCIDIISSVQWAPSMDADGLVLCAMYKRALVQVFSVTDPTWQCKIAEGICGLIGAKWTPDTRHIITISDFRIHATVWSLVDASKYVIRQPKLGTDGMTFSPDGSYLAVAERAECKDMLGIYDVASWEMVSHFDVASYDLVEVQWTTDGRAICVRDTFLEYRLLFYAPDGALLQCYEAYQHALGVKSLSWSPTGQFLAVGSYDERVRILSHMHYKPVAELEHPSSIVATRARP--DPVMVYEEVTQG 293          
BLAST of mRNA_Ecto-sp13_S_contig1424.3290.1 vs. uniprot
Match: A0A218ULA5_9PASE (WD repeat-containing protein WRAP73 n=2 Tax=Neognathae TaxID=8825 RepID=A0A218ULA5_9PASE)

HSP 1 Score: 236 bits (601), Expect = 2.830e-71
Identity = 111/240 (46.25%), Postives = 162/240 (67.50%), Query Frame = 1
Query:    4 VGKRLMVRDAMDGFEIVQGGLRPCVDKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCRVREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCVAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVLFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSIGSYDQCARLVSPVTWKAVAVLRH 723
            V  RL+VRDA    +I+   L  CVD+I+ LEW+SDS  +LCAMYKR +V+V S+ +PDW C++ EG AG+V + W+PD RH++  ++F L ++VWSL T+ +  ++ PKA    VAF+ D   MAVA RRDC+D + ++  RSW+ L  F  ET DL  ++++P+G  L + DT L+Y+VL YSL G+L+    AY   LG+KS+AWSP    L+IGS+D+  R+++ VTWK +  L H
Sbjct:   27 VQHRLLVRDA-SSLQILH--LYTCVDQIQYLEWSSDSLFILCAMYKRGVVQVWSLEQPDWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWSLCTKSVSYIKYPKACQQGVAFTKDGRYMAVAERRDCKDFISIFVCRSWQLLRHFDTETQDLFGIEWAPNGCVLAVWDTCLEYKVLLYSLDGRLLSSYRAYEWPLGIKSIAWSPSSQFLAIGSFDEKVRILNHVTWKKITELEH 263          
BLAST of mRNA_Ecto-sp13_S_contig1424.3290.1 vs. uniprot
Match: A0A8C4RYY7_ERPCA (WD repeat containing, antisense to TP73 n=3 Tax=Polypteridae TaxID=8289 RepID=A0A8C4RYY7_ERPCA)

HSP 1 Score: 237 bits (605), Expect = 9.790e-71
Identity = 110/255 (43.14%), Postives = 169/255 (66.27%), Query Frame = 1
Query:   13 RLMVRDAMDGFEIVQGGLRPCVDKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCRVREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCVAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVLFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSIGSYDQCARLVSPVTWKAVAVLRHVHPKTQPGFERVACYREV 777
            RL++RD  D  +I+Q  L  C+D+I+ +EW+SDS  +LCAM+KR LV+V S+ +PDW C++ EG AG+V A W+PD RH++  ++F L ++VWSL T+ +  ++ PKA    + F+ D   +A+A RRDC+D++ ++    W+ L  F  ET DLT +++SP+G  L + DT L+Y+VLFYSL G+L+    AY   LGVKS+ WSP    L++GSYD+  R+++ +TWK +  L H    + P   ++  YREV
Sbjct:   91 RLVIRD-FDTLQILQ--LYTCLDQIQFVEWSSDSSFILCAMFKRGLVQVWSMEQPDWHCKIDEGSAGLVAARWSPDGRHILNTTEFHLRITVWSLCTKSVSYIKYPKACHQGIDFTKDGRYLALAERRDCKDYISIFVCSDWQLLRHFETETQDLTGIEWSPNGCVLAVWDTCLEYKVLFYSLDGRLLSIFSAYEWCLGVKSIMWSPSSQFLAVGSYDEKVRMLNHITWKQITELDHPSTISNP---KIVFYREV 339          
BLAST of mRNA_Ecto-sp13_S_contig1424.3290.1 vs. uniprot
Match: G1MSD8_MELGA (WD repeat containing, antisense to TP73 n=42 Tax=Aves TaxID=8782 RepID=G1MSD8_MELGA)

HSP 1 Score: 235 bits (599), Expect = 1.260e-70
Identity = 109/255 (42.75%), Postives = 170/255 (66.67%), Query Frame = 1
Query:   13 RLMVRDAMDGFEIVQGGLRPCVDKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCRVREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCVAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVLFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSIGSYDQCARLVSPVTWKAVAVLRHVHPKTQPGFERVACYREV 777
            RL++RD ++  +I+Q  L  C+D+I+ +EW+SDS  +LCAMYKR +V+V S+ +PDW C++ EG AG+V + W+PD RH++  ++F L ++VWSL T+ +  ++ PKA    +AF+ D   MAVA RRDC+D + L+   +W+ L  F  ET DL  ++++P+G  L + DT L+Y++L YSL G+L+   +AY  +LG+KS+AWSP    L+IGSYD+  R+++ VTWK +    H    T P   +   Y+EV
Sbjct:   19 RLIIRD-VNTLQILQ--LYTCLDQIQYIEWSSDSLFILCAMYKRGIVQVWSLEQPDWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWSLCTKSVSYIKYPKACQQGIAFTKDGRYMAVAERRDCKDFVSLFVCSNWQLLRHFDTETQDLFGIEWAPNGCVLAVWDTCLEYKILLYSLDGRLLSTYQAYEWSLGIKSIAWSPSSQFLAIGSYDEKVRILNHVTWKKITEFEHPATVTNP---KTIVYKEV 267          
BLAST of mRNA_Ecto-sp13_S_contig1424.3290.1 vs. uniprot
Match: UPI00112EC88D (WD repeat-containing protein WRAP73 isoform X1 n=3 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112EC88D)

HSP 1 Score: 234 bits (598), Expect = 2.570e-70
Identity = 110/258 (42.64%), Postives = 169/258 (65.50%), Query Frame = 1
Query:   13 RLMVRDAMDGFEIVQGGLRPCVDKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCRVREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCVAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVLFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSIGSYDQCARLVSPVTWKAVAVLRHVHPKTQPGFERVACYREVPLG 786
            RL+VRD +   +I+Q  L  C+D+I+ +EW++DS  +LCAMYKR L++V S+ +PDW C++ EG AG+  + W+PD RH++  ++F L ++VWSL T+ +  ++ PKA    VAF+ D   MA+A RRDC+D++ ++   +W+ L  F  ET DL  +D+SP+G  L + DT L ++VL YSL G+L+    AY  +LG+KSM WSP    L+IGSYD+  R+++ VTWK +  L H    + P   ++  Y+EV  G
Sbjct:   30 RLVVRD-VGTLQILQ--LYTCLDQIQHVEWSADSLFILCAMYKRGLIQVWSLEQPDWHCKIDEGSAGLAASFWSPDGRHILNTTEFHLRITVWSLCTKSVSYIKYPKACQQGVAFTKDGRHMALAERRDCQDYISIFVCSNWQLLRHFGTETQDLAGIDWSPNGCVLAVWDTCLQFKVLLYSLDGRLLSTFSAYEWSLGIKSMTWSPSSQFLAIGSYDEKVRILNHVTWKPITELEHPASISDP---KIVVYKEVESG 281          
BLAST of mRNA_Ecto-sp13_S_contig1424.3290.1 vs. uniprot
Match: A0A7L2S5B4_9PASS (WRP73 protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L2S5B4_9PASS)

HSP 1 Score: 227 bits (579), Expect = 5.160e-70
Identity = 106/240 (44.17%), Postives = 160/240 (66.67%), Query Frame = 1
Query:    4 VGKRLMVRDAMDGFEIVQGGLRPCVDKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCRVREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCVAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVLFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSIGSYDQCARLVSPVTWKAVAVLRH 723
            V  RL+VRDA    +++Q  L  C+D+I+ +EW+SDS  +LCA+YKR +V+V S+ +P W CR+ EG AG+V + W+PD RH++  ++F L ++VWSL T+ +  ++ PKA    V F+ D   MAVA RRDC+D + ++   +W+ L  F  ET DL+ ++++P+G  L   DT L+Y+VL YSL G+L+    AY   LGVKS+AWSP    L+IGS+D+  R+++ VTWK +  L H
Sbjct:    4 VQHRLLVRDA-SSLQLLQ--LYTCLDQIQYIEWSSDSLFILCALYKRGIVQVWSLEQPAWHCRIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWSLCTKSVSYIKYPKACQQGVVFTKDGRYMAVAERRDCKDFISIFVCSNWQLLRHFDTETQDLSGIEWAPNGCVLAAWDTCLEYKVLLYSLDGRLLSSFRAYQWPLGVKSIAWSPSSQFLAIGSFDEKVRILNHVTWKKITDLDH 240          
BLAST of mRNA_Ecto-sp13_S_contig1424.3290.1 vs. uniprot
Match: K7F8R3_PELSI (Uncharacterized protein n=5 Tax=Archelosauria TaxID=1329799 RepID=K7F8R3_PELSI)

HSP 1 Score: 233 bits (595), Expect = 5.690e-70
Identity = 108/255 (42.35%), Postives = 168/255 (65.88%), Query Frame = 1
Query:   13 RLMVRDAMDGFEIVQGGLRPCVDKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCRVREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCVAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVLFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSIGSYDQCARLVSPVTWKAVAVLRHVHPKTQPGFERVACYREV 777
            RL+VRD ++  +I+Q  L  C+D+I+ +EW+SDS  +LCAMYKR +V+V S+ +PDW C++ EG AG+V + W+PD RH++  ++F L ++VWSL T+ +  ++ PKA    +AF+ D   MA+A RRDC+D + L+    W+ L  F  ET DL  ++++P+G  L + DT L+Y++L YSL G+L+    AY  +LG+KS+AWSP    L+IGSYD+  R+++ VTWK +    H      P   ++  Y+EV
Sbjct:   29 RLIVRD-VNSLQILQ--LYTCLDQIQYIEWSSDSLFILCAMYKRGIVQVWSLEQPDWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWSLCTKSVSYIKYPKACQHGIAFTKDGRYMALAERRDCKDFISLFVCSDWQLLRHFDTETQDLAGIEWAPNGCVLAVWDTCLEYKILLYSLDGRLLSTYSAYEWSLGIKSIAWSPSSQFLAIGSYDEKVRILNHVTWKKITEFEHPVTIANP---KIIVYKEV 277          
BLAST of mRNA_Ecto-sp13_S_contig1424.3290.1 vs. uniprot
Match: A0A485K5F4_9STRA (Aste57867_1501 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K5F4_9STRA)

HSP 1 Score: 232 bits (592), Expect = 6.980e-70
Identity = 113/243 (46.50%), Postives = 159/243 (65.43%), Query Frame = 1
Query:   13 RLMVRDAMDGFEIVQGGLRPCVDKIEALEWA----SDSD--LLLCAMYKRSLVEVMSVARPDWQCRVREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCVAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVLFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSIGSYDQCARLVSPVTWKAVAVLRH 723
            RL VRD      IVQ  +  CVD I A++WA    SDS+  L+ CAMYKR++V+V S+A P W C++ EG+ G++ A W PD RHV+T SDF +H +VWSL     + +R PK      AFSPD   +AVA R DC+D + +Y+  +WE +  F   + D+  + +S DG  + L+DT L+YR+LFYS+ G L+ + EAY +ALGVK+M+WSP G  L++GSYD+  RLVS + WK++A L H
Sbjct:   17 RLCVRDVGLNMSIVQ--IFTCVDVISAIQWAPFDSSDSNIPLIYCAMYKRAIVQVFSIADPTWNCKIAEGVCGLIAAKWTPDTRHVITVSDFRIHATVWSLVDASKYVIRHPKLGVEGFAFSPDGTYLAVAERVDCKDAIGIYNVETWELVRHFDVTSYDVVEISWSLDGRAIVLRDTFLEYRLLFYSVDGVLLHQFEAYQNALGVKTMSWSPSGQFLAVGSYDEKVRLVSHMHWKSIAELDH 257          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1424.3290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUS3_9PHAE4.940e-20892.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDM7_ECTSI6.440e-20676.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A067CYV4_SAPPC2.600e-7244.53ANAPC4_WD40 domain-containing protein n=2 Tax=Sapr... [more]
A0A218ULA5_9PASE2.830e-7146.25WD repeat-containing protein WRAP73 n=2 Tax=Neogna... [more]
A0A8C4RYY7_ERPCA9.790e-7143.14WD repeat containing, antisense to TP73 n=3 Tax=Po... [more]
G1MSD8_MELGA1.260e-7042.75WD repeat containing, antisense to TP73 n=42 Tax=A... [more]
UPI00112EC88D2.570e-7042.64WD repeat-containing protein WRAP73 isoform X1 n=3... [more]
A0A7L2S5B4_9PASS5.160e-7044.17WRP73 protein (Fragment) n=2 Tax=Neognathae TaxID=... [more]
K7F8R3_PELSI5.690e-7042.35Uncharacterized protein n=5 Tax=Archelosauria TaxI... [more]
A0A485K5F4_9STRA6.980e-7046.50Aste57867_1501 protein n=1 Tax=Aphanomyces stellat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1424contigEcto-sp13_S_contig1424:12198..17292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score571.2
Seed ortholog evalue3e-160
Seed eggNOG ortholog2880.D8LDM7
Model size993
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.positive regulation of non-motile cilium assembly
EggNOG OGsKOG4497@1,KOG4497@2759
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-19_001240.1
Cds size975
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1424.3290.1prot_Ecto-sp13_S_contig1424.3290.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1424 12198..17274 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462761.1208851-CDS-Ecto-sp13_S_contig1424:12197..124491681462761.1208851-CDS-Ecto-sp13_S_contig1424:12197..12449Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1424 12198..12449 -
1681462761.1320946-CDS-Ecto-sp13_S_contig1424:12941..131461681462761.1320946-CDS-Ecto-sp13_S_contig1424:12941..13146Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1424 12942..13146 -
1681462761.14087-CDS-Ecto-sp13_S_contig1424:13637..137691681462761.14087-CDS-Ecto-sp13_S_contig1424:13637..13769Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1424 13638..13769 -
1681462761.1587842-CDS-Ecto-sp13_S_contig1424:14172..142671681462761.1587842-CDS-Ecto-sp13_S_contig1424:14172..14267Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1424 14173..14267 -
1681462761.1762998-CDS-Ecto-sp13_S_contig1424:14943..150961681462761.1762998-CDS-Ecto-sp13_S_contig1424:14943..15096Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1424 14944..15096 -
1681462761.1906312-CDS-Ecto-sp13_S_contig1424:15806..159051681462761.1906312-CDS-Ecto-sp13_S_contig1424:15806..15905Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1424 15807..15905 -
1681462761.1986995-CDS-Ecto-sp13_S_contig1424:17235..172741681462761.1986995-CDS-Ecto-sp13_S_contig1424:17235..17274Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1424 17236..17274 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462761.2070177-UTR-Ecto-sp13_S_contig1424:17274..172921681462761.2070177-UTR-Ecto-sp13_S_contig1424:17274..17292Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1424 17275..17292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1424.3290.1

>prot_Ecto-sp13_S_contig1424.3290.1 ID=prot_Ecto-sp13_S_contig1424.3290.1|Name=mRNA_Ecto-sp13_S_contig1424.3290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=325bp
MVRDAMDGFEIVQGGLRPCVDKIEALEWASDSDLLLCAMYKRSLVEVMSV
ARPDWQCRVREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHT
VRQPKAAPGCVAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAET
VDLTHVDFSPDGFTLCLQDTSLDYRVLFYSLAGKLVGRLEAYSHALGVKS
MAWSPDGTLLSIGSYDQCARLVSPVTWKAVAVLRHVHPKTQPGFERVACY
REVPLGQEQDYEEEDGNDNNKENGAAENNRIRAPSNASSLSLVMQSRAGG
GGAGTKGVKGGRRTVPESIRKPKM*
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mRNA from alignment at Ecto-sp13_S_contig1424:12198..17292-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1424.3290.1 ID=mRNA_Ecto-sp13_S_contig1424.3290.1|Name=mRNA_Ecto-sp13_S_contig1424.3290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5095bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1424:12198..17292- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGTGGGGAAGAGGCTGATGGTGCGGGACGCGATGGATGGCTTCGAAAT CGTGCAGGTGGGGAATCGTGCTAGGGTGTGAGGGAGGTCGGATTATGTCA GCAGCGGTGTCAACACACCTTCGCAGCCTAACTTGCGTCCGTCTTGTTTT TAAAAAAGAACATGCTTGAGGACCGATTTGAAAAAACCAAGGGTTGTTCT GCTGCTGTTGTTGCTCTGTGGCAGGGCTCTCGAGATGAAAACACGTCGTA TTGACAAGGGGCGTCATGAGCATCTCAGCCTACTACCACAGCAGCGAGGA TCACCTCGGTCGTGCCGCCATATGCTTCTGCACACCTTCCTGTGCGTCCC TCTCCTAACATCACTCGCCTATTGCGTAAGATTCCACCACCCCCCCCCCT CAGTGAAAACCCGGTGTGCTCCTCTCCGGCTTGGTACGGAATGCGAGGTC AATGGTCTCACGACTACTGCATGCGCGGCTAGCAGAAAAGCCCCCGCCCG GCCGATTTCCAAATCCGATTAGCTCTGCAGCAAGAGCAGCAGCGCCGAGG ATAGCGGCGCTAGAAGCGTCTCGTTGAGAGCTTTCCGAACGTGAATCATA CCGTAGGTTGCAGAAGATATTACACCCCCTGGGCCGATTTTCAAAGCTCG ATTTCTCGGCAGGAAAAGCAGTGCCGGTACCGAAAGTGGCGGCCTTGGAA CCGTCTCGTCGAGAGCTTTCCGAAAATATATCGTCTGAACTCGGGATCCT CTTCGTCATGGAGTAGTCGAGCTTCGAAAATGGGTACAGGGGGTGTGTAT CTTATGCATCCTTCGTCGTGGAGGGGTACTACAGTAGTCTGACCTTTGAA ACTCGGTCCAGGGGGTGGTATCTCATGCAACCTACGGTACTCGACAGTGT AGGCCTTGTCTTGACGATCTGGCCTTCATCAAGTGCGTCCAACACCTTTA CGCCAGTAATCCTAAAAGCACCTCCTTCCGCACATCGGCGTGCATTACGG TACACGACTCGGCTTCCCTCTGATACAACGATGTTTCCGTCACACTGGTG TTCACATCGCGTACATAATGCATACCCCAAAAAGATGACCATAGTTTTGT GGTCTCAGGTCGCGGGCTCTCCCCAGAGTGGGAATCTATGCACGCGCACA TACATGCGTCTGGCAGTGGTGTTGATTCTGCCCCTGCACTGCACGAAAAA ATGCAGCTTTTTCGGCTCTCCATCAGCACACGTATCCTAACACCGCAAGG CTGGTTGTCGCAATCGCACGCTGCTGGTTTCCCTGACCCTCGTTCTCGTG TTCGTTGTTGGTTGATGCCGACACTGCTGCTACCCGCGGGTTCCTCGCTC CTCACCCCTCTCGCTTGCTGCTTACTTCTTTCTCCAGGGCGGCCTTCGGC CTTGCGTGGACAAGATCGAGGCCTTGGAGTGGGCGTCGGACTCCGACCTC CTGCTCTGCGCGATGTACAAGCGCTCGCTTGTCGAGGTATGAAGGAGTGC AAATATTTACTTCCAGACAAATACTGTCAGCAGAATCATGCTCAAAAATT GTTTCCAGACAAACACTCCCAGAAGAATCCTGCGAAAACATTGTTTGCGA GCGTGTTGTTTGCGAGTAAGTAAGGGGTAGCTGCGGCCGCGGGCAAATAC CGTTTGAATCTGTTCATTTGTATTTGAACAGGGTGTGAAGCATTCAGAAT TTTCACCGCGGTCGTCAGGGAGGCCGCTGTTGCTGTTGCATGTTTGCCGA GCAGCATACATGTTCGCCCCGCGAGCAGGAGATGATGAGGGCAGTCCTGC CTTTAGCTTGTCGTCGTTGGTGTTTTTTTCAATGGAGAGCATGAACTGCG ATGTACACCTCACGGGCAGCACCAGGTGAAAATTTTCTCTCGGTCGTCTT CCATGGCGGTCGATCTACATAGCTTTGTTATGCGTGCGGGTTTTGATTTT AATGGTTCCCGTTTCCAAGGCGTGGTGTCACAGTGCCGCATGTTCTTGAG CATGCTTGATGGCGACGCGACGTATGGGACGAAATTTATCAGGGAACATT TCCACTCTACAATACGGCGAGCAACAAATCGAAGAACTGGGTTGGAAAAC CTTGCTGCTCTGTCCTCACTCCCACTCGCCCCCCTCCCTCTTCCCCGTAT ACTCCTGCTCATGTGCACCGGGTCCGTTTTCCCTGCGTCCGTGAAGGTGA TGTCGGTTGCGAGACCCGACTGGCAGTGCCGAGTACGCGAGGGCTTGGCG GGGATGGTCAAGGCGCTGTGGGCTCCCGACGCTAGACACGTCGTCACGTT TTCCGACTTCAGCTTGCACATGAGCGTGTGGTCACTGTCCACGCGGCAGG TGAATCTATCCCTGTTCTATTGTCATTGTTTTAGTTTATTTTCACCTTTC CTTTGTTGTGTTGTTGTGTCCGCTCTTGGCAGGAGGTTTCCTTGGACGCA TGTAGCCTACCGACAACCACACGGGTGATGACAGGGTCAGCAAGGCTGTA ATTACCCTTGCAGTCGACCCAGCGTAGGCATTTGTCGGCGTGATCTTCGG CCTAGTTTCATACTGGTCGGCTTTGGTATTGTTCGCCTTTTGTCCCACAG AGCCACATACTTGATTGGCCAGTACAGTCTCCACGCCTTCCAAAACACCT CGGCGAGCCAATGAAAAGTGCGCACGCTAGGCTATTCGCAACCAACTCTC TTGCCCGACTCCATTCAGCCCACGCATACCCTCGAGCCGTGGATGCCTGT CATCGGCTTGTGCTTCCGTCTGTTAGTCGCTGGTGGAGGTTGTTAAGTAT TTGCCTTTTTTTTGGTACTCGGAAATATTTTTTGGTGTGGATATGTTGCG CCCTTGCAGCTCGGCCTCTGGCCACGAAATCCTTGTTTCCAATCCCATGC ATCCGTACCCATTGGAAGACAATTCATGTCAATCGTTTCGATCCGTTCCG CACACCGTACATAGTTTCCGGCTTCTTATTTTTGGTGTGCCTGCCTGGTT GTTTTTTTCGGTTTTTGTCGCGCAGTTGCACACTGTTCGGCAGCCGAAGG CTGCTCCGGGATGTGTCGCCTTCAGCCCGGACGCCCTCATCATGGCCGTC GCCACACGACGAGATTGCAGGTGAAAACATGCGTAAGGAGACATTCTAAG CGATTTTGTTGTGTGCTCATCATGTCTGGGATGTCTCTGCTGTGAAGATG CTTGTCGTAGGGATGAAGATCGTGGCCCTGGCGATGATCGATGGTTCCTT TGCACGGCGTCGAAGCGATTGCGGTACGGATTCAGCAGGACGGTATTTAT TGGTATTGGTTGCAGAAAAAGTCTCAGTGTTGAACGTTTTCAGGGTGCTT TTCAAAACAATATACCTCTATTTAATGGAACCCTTCCCGAAACGGTCTGA AATAAAATGCTCCGCACACGCTCCGGAAGAGTCATCACCTGGAAGCGATT GATTGAAGCATGTTTTGGGGTCATTCCTAGTGGCGCTCTTTTTCTGATTC TTCGTCTTTCTTTCTTTGCGAAGAGACCACCTGAAGCTGTACGACACTAG GTCGTGGGAGTCTCTCGGCGAGTTCACGGCGGAGACGGTGGACCTCACTC ACGTCGACTTCTCTCCCGACGGCTTCACCCTGTGCCTGCAGGACACGTCG CTAGAGTGAGTCAAAGTCAGTCATTCAGTCAGAGACGAGACGTATCGAGA CCCGCGTATGTAGTGTTTTATAGAAGACGCTTTCTTGACGATACATAAGT GGTAGTAAGACAGGCACACCTGGTGTGTCAGGGAATTGCGACCTTATCTG TGGATGCTTGAACGATGGCGTGACGGCCCTGAACAGGGCAAGACTCAATC GCTACGCTTGCTCTACGGGAACGATGCAACTCTGTTTCTGGACTACAACG GTGACACAGCAACCTAACAACAGCGCAGTACTAAGGGAGGTGTACTCATC GTCGTGCATGCCGTAGTCGTGAGACCATTGACCTCGCATCCCTACAAAGC CAGGACGGAGGTGGGGGTTCGTTTCGTTTCAACCGTTTAGTGTAGCACGG ACCGTGGTTCACGCACCGACCCGAAAAGGACTGCCCGTGTCCGCGGCGGA ACGACCCGCGTATCCCACCCACCGCCGCTTGATCATCTGCGTCCAGCTAC CGGGTGTTGTTTTACTCGCTGGCGGGGAAGCTGGTGGGGCGCTTGGAGGC GTACTCGCACGCCCTGGGCGTCAAGTCCATGGCGTGGTCGCCCGACGGCA CGCTGCTGTCGATCGGCAGCTACGACCAGTGCGCGCGGCTGGTTTCTCCG GTGACGTGGAAGGCGGTGGCGGTTCTGCGGCACGTGCACCCCAAGACGCA GGTGGGCTTTCGAGCGTTGGCGGGTGTTCGGTGTTTCTTGTTGGTGGTTG CTGCTGTTGTTTGCTGTCGTTGCTACTGCTGGTGCGACTGTGGCTGTGGC TGCTTCTTCTGCTGCTTCTGGTGCGGGTGCTGCTTCTGGTGCGGGTGCTT CTTCTGCGATTCGGTGGTGCTCTTGTTGTTCTTGTTGTCCGTGTGGCTCG TGTCATCGTTGTGGTCTTCGTTTTCGTCCGCCGTTGTGTACGATAATGTG GTGGAAGGATACAGGGTGTCTTCGATTCCCTGGGGGTGAAGTTCTATGAT TTTGTGACACAGGAGACGATGACGGTTGTGCGATGGAAGGGATGTCATGG GTGTGGTGGTGGAACTCACGGCAGTTAAGCTCATGATGTTTTGGTAGTTG TCGCTACGTACGTAAGCCCGCACGTCGTGTCGGTTGTTTTGTGATATTTC AATGCATAACTCCCCCCCCCCCTCCCCCTTTCCCTCCCCGCAGCCGGGTT TCGAGAGGGTGGCCTGTTACCGCGAAGTGCCTCTGGGGCAAGAGCAAGAC TACGAAGAAGAGGATGGGAACGATAACAACAAAGAGAACGGCGCGGCCGA AAACAACAGGATAAGGGCCCCGTCGAACGCGTCGTCGCTGTCGCTGGTAA TGCAGTCACGCGCCGGTGGCGGAGGGGCCGGGACGAAGGGGGTCAAAGGG GGACGACGCACCGTGCCGGAGAGTATTCGCAAGCCGAAAATGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1424:12198..17292-

>mRNA_Ecto-sp13_S_contig1424.3290.1 ID=mRNA_Ecto-sp13_S_contig1424.3290.1|Name=mRNA_Ecto-sp13_S_contig1424.3290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=975bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1424:12198..17292- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCGGGACGCGATGGATGGCTTCGAAATCGTGCAGGGCGGCCTTCG
GCCTTGCGTGGACAAGATCGAGGCCTTGGAGTGGGCGTCGGACTCCGACC
TCCTGCTCTGCGCGATGTACAAGCGCTCGCTTGTCGAGGTGATGTCGGTT
GCGAGACCCGACTGGCAGTGCCGAGTACGCGAGGGCTTGGCGGGGATGGT
CAAGGCGCTGTGGGCTCCCGACGCTAGACACGTCGTCACGTTTTCCGACT
TCAGCTTGCACATGAGCGTGTGGTCACTGTCCACGCGGCAGTTGCACACT
GTTCGGCAGCCGAAGGCTGCTCCGGGATGTGTCGCCTTCAGCCCGGACGC
CCTCATCATGGCCGTCGCCACACGACGAGATTGCAGAGACCACCTGAAGC
TGTACGACACTAGGTCGTGGGAGTCTCTCGGCGAGTTCACGGCGGAGACG
GTGGACCTCACTCACGTCGACTTCTCTCCCGACGGCTTCACCCTGTGCCT
GCAGGACACGTCGCTAGACTACCGGGTGTTGTTTTACTCGCTGGCGGGGA
AGCTGGTGGGGCGCTTGGAGGCGTACTCGCACGCCCTGGGCGTCAAGTCC
ATGGCGTGGTCGCCCGACGGCACGCTGCTGTCGATCGGCAGCTACGACCA
GTGCGCGCGGCTGGTTTCTCCGGTGACGTGGAAGGCGGTGGCGGTTCTGC
GGCACGTGCACCCCAAGACGCAGCCGGGTTTCGAGAGGGTGGCCTGTTAC
CGCGAAGTGCCTCTGGGGCAAGAGCAAGACTACGAAGAAGAGGATGGGAA
CGATAACAACAAAGAGAACGGCGCGGCCGAAAACAACAGGATAAGGGCCC
CGTCGAACGCGTCGTCGCTGTCGCTGGTAATGCAGTCACGCGCCGGTGGC
GGAGGGGCCGGGACGAAGGGGGTCAAAGGGGGACGACGCACCGTGCCGGA
GAGTATTCGCAAGCCGAAAATGTGA
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