mRNA_Ecto-sp13_S_contig1424.3290.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1424.3290.1 vs. uniprot
Match: A0A6H5KUS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS3_9PHAE) HSP 1 Score: 589 bits (1519), Expect = 4.940e-208 Identity = 290/313 (92.65%), Postives = 302/313 (96.49%), Query Frame = 1
Query: 55 QGGLRPCVDKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCRVREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCVAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVLFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSIGSYDQCARLVSPVTWKAVAVLRHVHPKTQPGFERVACYREVPLGQEQDYEE-EDGNDNNKENGAAENNRIRAPSNASSLSLVMQSRAGGGGAGTKGVKGGRRTVPESIRKPKM 990
+GGLRPC+DKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCR+REGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGC+AFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSL+YRV+FYSLAGKLVGRLEAYS ALGVKSMAWSP GTLLS+GSYDQCARLVSPVTWKAVAVLRHVHPKTQPGFE+VACYREVPLGQ+QDYEE EDG+DNNKENG A NNR+RAPSNASSLSLVMQSRAGGG GTKGVKGGRR PES KPK+
Sbjct: 54 KGGLRPCLDKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCRIREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCIAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLEYRVMFYSLAGKLVGRLEAYSRALGVKSMAWSPAGTLLSVGSYDQCARLVSPVTWKAVAVLRHVHPKTQPGFEKVACYREVPLGQQQDYEEGEDGSDNNKENGGAGNNRMRAPSNASSLSLVMQSRAGGGAVGTKGVKGGRRPGPESTLKPKI 366
BLAST of mRNA_Ecto-sp13_S_contig1424.3290.1 vs. uniprot
Match: D8LDM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM7_ECTSI) HSP 1 Score: 580 bits (1494), Expect = 6.440e-206 Identity = 305/401 (76.06%), Postives = 312/401 (77.81%), Query Frame = 1
Query: 1 AVGKRLMVRDAMDGFEIVQGGLRPCVDKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCRVREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCVAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVLFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSIGSYDQCARLVSPVTWKAVAVLRHVHPKTQ----------------------------------------------------------------------PGFERVACYREVPLGQEQDYEEEDGNDNNKENGAAEN-NRIRAPSNASSLSLVMQSRAGGGGAGTKGVKGGRRTVPESIRKPKM 990
AVGKRLMVRDAMDGFEIVQGGLRPC+DKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCR+REGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGC+AFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRV+FYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLS+GSYDQCARLVSPVTWKAVAVLRHVHPKTQ PGFE+VACYREVPLGQEQDYEE NR+RAPSNASSLSLVMQSRAGGGGAGTKGVKGGRRT PES KPKM
Sbjct: 28 AVGKRLMVRDAMDGFEIVQGGLRPCLDKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCRIREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCIAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVMFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSVGSYDQCARLVSPVTWKAVAVLRHVHPKTQDVDITYAPALTGPIPSERPDPSKPHPRLGVGQIMSWSVDGRYLATRNDNMASALWVWDTEDLSLSSVVVQPGFEKVACYREVPLGQEQDYEEXXXXXXXXXXXXXXXXNRLRAPSNASSLSLVMQSRAGGGGAGTKGVKGGRRTGPESTLKPKM 428
BLAST of mRNA_Ecto-sp13_S_contig1424.3290.1 vs. uniprot
Match: A0A067CYV4_SAPPC (ANAPC4_WD40 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CYV4_SAPPC) HSP 1 Score: 239 bits (611), Expect = 2.600e-72 Identity = 118/265 (44.53%), Postives = 167/265 (63.02%), Query Frame = 1
Query: 13 RLMVRDAMDGFEIVQGGLRPCVDKIEALEWASDSD---LLLCAMYKRSLVEVMSVARPDWQCRVREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCVAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVLFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSIGSYDQCARLVSPVTWKAVAVLRH----VHPKTQPGFERVACYREVPLG 786
RL +RDA +VQ + C+D I +++WA D L+LCAMYKR+LV+V SV P WQC++ EG+ G++ A W PD RH++T SDF +H +VWSL + +RQPK + FSPD +AVA R +C+D L +YD SWE + F + DL V ++ DG +C++DT L+YR+LFY+ G L+ EAY HALGVKS++WSP G L++GSYD+ R++S + +K VA L H V + +P + V Y EV G
Sbjct: 33 RLSIRDATLNMAVVQ--VYTCIDIISSVQWAPSMDADGLVLCAMYKRALVQVFSVTDPTWQCKIAEGICGLIGAKWTPDTRHIITISDFRIHATVWSLVDASKYVIRQPKLGTDGMTFSPDGSYLAVAERAECKDMLGIYDVASWEMVSHFDVASYDLVEVQWTTDGRAICVRDTFLEYRLLFYAPDGALLQCYEAYQHALGVKSLSWSPTGQFLAVGSYDERVRILSHMHYKPVAELEHPSSIVATRARP--DPVMVYEEVTQG 293
BLAST of mRNA_Ecto-sp13_S_contig1424.3290.1 vs. uniprot
Match: A0A218ULA5_9PASE (WD repeat-containing protein WRAP73 n=2 Tax=Neognathae TaxID=8825 RepID=A0A218ULA5_9PASE) HSP 1 Score: 236 bits (601), Expect = 2.830e-71 Identity = 111/240 (46.25%), Postives = 162/240 (67.50%), Query Frame = 1
Query: 4 VGKRLMVRDAMDGFEIVQGGLRPCVDKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCRVREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCVAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVLFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSIGSYDQCARLVSPVTWKAVAVLRH 723
V RL+VRDA +I+ L CVD+I+ LEW+SDS +LCAMYKR +V+V S+ +PDW C++ EG AG+V + W+PD RH++ ++F L ++VWSL T+ + ++ PKA VAF+ D MAVA RRDC+D + ++ RSW+ L F ET DL ++++P+G L + DT L+Y+VL YSL G+L+ AY LG+KS+AWSP L+IGS+D+ R+++ VTWK + L H
Sbjct: 27 VQHRLLVRDA-SSLQILH--LYTCVDQIQYLEWSSDSLFILCAMYKRGVVQVWSLEQPDWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWSLCTKSVSYIKYPKACQQGVAFTKDGRYMAVAERRDCKDFISIFVCRSWQLLRHFDTETQDLFGIEWAPNGCVLAVWDTCLEYKVLLYSLDGRLLSSYRAYEWPLGIKSIAWSPSSQFLAIGSFDEKVRILNHVTWKKITELEH 263
BLAST of mRNA_Ecto-sp13_S_contig1424.3290.1 vs. uniprot
Match: A0A8C4RYY7_ERPCA (WD repeat containing, antisense to TP73 n=3 Tax=Polypteridae TaxID=8289 RepID=A0A8C4RYY7_ERPCA) HSP 1 Score: 237 bits (605), Expect = 9.790e-71 Identity = 110/255 (43.14%), Postives = 169/255 (66.27%), Query Frame = 1
Query: 13 RLMVRDAMDGFEIVQGGLRPCVDKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCRVREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCVAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVLFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSIGSYDQCARLVSPVTWKAVAVLRHVHPKTQPGFERVACYREV 777
RL++RD D +I+Q L C+D+I+ +EW+SDS +LCAM+KR LV+V S+ +PDW C++ EG AG+V A W+PD RH++ ++F L ++VWSL T+ + ++ PKA + F+ D +A+A RRDC+D++ ++ W+ L F ET DLT +++SP+G L + DT L+Y+VLFYSL G+L+ AY LGVKS+ WSP L++GSYD+ R+++ +TWK + L H + P ++ YREV
Sbjct: 91 RLVIRD-FDTLQILQ--LYTCLDQIQFVEWSSDSSFILCAMFKRGLVQVWSMEQPDWHCKIDEGSAGLVAARWSPDGRHILNTTEFHLRITVWSLCTKSVSYIKYPKACHQGIDFTKDGRYLALAERRDCKDYISIFVCSDWQLLRHFETETQDLTGIEWSPNGCVLAVWDTCLEYKVLFYSLDGRLLSIFSAYEWCLGVKSIMWSPSSQFLAVGSYDEKVRMLNHITWKQITELDHPSTISNP---KIVFYREV 339
BLAST of mRNA_Ecto-sp13_S_contig1424.3290.1 vs. uniprot
Match: G1MSD8_MELGA (WD repeat containing, antisense to TP73 n=42 Tax=Aves TaxID=8782 RepID=G1MSD8_MELGA) HSP 1 Score: 235 bits (599), Expect = 1.260e-70 Identity = 109/255 (42.75%), Postives = 170/255 (66.67%), Query Frame = 1
Query: 13 RLMVRDAMDGFEIVQGGLRPCVDKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCRVREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCVAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVLFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSIGSYDQCARLVSPVTWKAVAVLRHVHPKTQPGFERVACYREV 777
RL++RD ++ +I+Q L C+D+I+ +EW+SDS +LCAMYKR +V+V S+ +PDW C++ EG AG+V + W+PD RH++ ++F L ++VWSL T+ + ++ PKA +AF+ D MAVA RRDC+D + L+ +W+ L F ET DL ++++P+G L + DT L+Y++L YSL G+L+ +AY +LG+KS+AWSP L+IGSYD+ R+++ VTWK + H T P + Y+EV
Sbjct: 19 RLIIRD-VNTLQILQ--LYTCLDQIQYIEWSSDSLFILCAMYKRGIVQVWSLEQPDWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWSLCTKSVSYIKYPKACQQGIAFTKDGRYMAVAERRDCKDFVSLFVCSNWQLLRHFDTETQDLFGIEWAPNGCVLAVWDTCLEYKILLYSLDGRLLSTYQAYEWSLGIKSIAWSPSSQFLAIGSYDEKVRILNHVTWKKITEFEHPATVTNP---KTIVYKEV 267
BLAST of mRNA_Ecto-sp13_S_contig1424.3290.1 vs. uniprot
Match: UPI00112EC88D (WD repeat-containing protein WRAP73 isoform X1 n=3 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112EC88D) HSP 1 Score: 234 bits (598), Expect = 2.570e-70 Identity = 110/258 (42.64%), Postives = 169/258 (65.50%), Query Frame = 1
Query: 13 RLMVRDAMDGFEIVQGGLRPCVDKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCRVREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCVAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVLFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSIGSYDQCARLVSPVTWKAVAVLRHVHPKTQPGFERVACYREVPLG 786
RL+VRD + +I+Q L C+D+I+ +EW++DS +LCAMYKR L++V S+ +PDW C++ EG AG+ + W+PD RH++ ++F L ++VWSL T+ + ++ PKA VAF+ D MA+A RRDC+D++ ++ +W+ L F ET DL +D+SP+G L + DT L ++VL YSL G+L+ AY +LG+KSM WSP L+IGSYD+ R+++ VTWK + L H + P ++ Y+EV G
Sbjct: 30 RLVVRD-VGTLQILQ--LYTCLDQIQHVEWSADSLFILCAMYKRGLIQVWSLEQPDWHCKIDEGSAGLAASFWSPDGRHILNTTEFHLRITVWSLCTKSVSYIKYPKACQQGVAFTKDGRHMALAERRDCQDYISIFVCSNWQLLRHFGTETQDLAGIDWSPNGCVLAVWDTCLQFKVLLYSLDGRLLSTFSAYEWSLGIKSMTWSPSSQFLAIGSYDEKVRILNHVTWKPITELEHPASISDP---KIVVYKEVESG 281
BLAST of mRNA_Ecto-sp13_S_contig1424.3290.1 vs. uniprot
Match: A0A7L2S5B4_9PASS (WRP73 protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L2S5B4_9PASS) HSP 1 Score: 227 bits (579), Expect = 5.160e-70 Identity = 106/240 (44.17%), Postives = 160/240 (66.67%), Query Frame = 1
Query: 4 VGKRLMVRDAMDGFEIVQGGLRPCVDKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCRVREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCVAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVLFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSIGSYDQCARLVSPVTWKAVAVLRH 723
V RL+VRDA +++Q L C+D+I+ +EW+SDS +LCA+YKR +V+V S+ +P W CR+ EG AG+V + W+PD RH++ ++F L ++VWSL T+ + ++ PKA V F+ D MAVA RRDC+D + ++ +W+ L F ET DL+ ++++P+G L DT L+Y+VL YSL G+L+ AY LGVKS+AWSP L+IGS+D+ R+++ VTWK + L H
Sbjct: 4 VQHRLLVRDA-SSLQLLQ--LYTCLDQIQYIEWSSDSLFILCALYKRGIVQVWSLEQPAWHCRIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWSLCTKSVSYIKYPKACQQGVVFTKDGRYMAVAERRDCKDFISIFVCSNWQLLRHFDTETQDLSGIEWAPNGCVLAAWDTCLEYKVLLYSLDGRLLSSFRAYQWPLGVKSIAWSPSSQFLAIGSFDEKVRILNHVTWKKITDLDH 240
BLAST of mRNA_Ecto-sp13_S_contig1424.3290.1 vs. uniprot
Match: K7F8R3_PELSI (Uncharacterized protein n=5 Tax=Archelosauria TaxID=1329799 RepID=K7F8R3_PELSI) HSP 1 Score: 233 bits (595), Expect = 5.690e-70 Identity = 108/255 (42.35%), Postives = 168/255 (65.88%), Query Frame = 1
Query: 13 RLMVRDAMDGFEIVQGGLRPCVDKIEALEWASDSDLLLCAMYKRSLVEVMSVARPDWQCRVREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCVAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVLFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSIGSYDQCARLVSPVTWKAVAVLRHVHPKTQPGFERVACYREV 777
RL+VRD ++ +I+Q L C+D+I+ +EW+SDS +LCAMYKR +V+V S+ +PDW C++ EG AG+V + W+PD RH++ ++F L ++VWSL T+ + ++ PKA +AF+ D MA+A RRDC+D + L+ W+ L F ET DL ++++P+G L + DT L+Y++L YSL G+L+ AY +LG+KS+AWSP L+IGSYD+ R+++ VTWK + H P ++ Y+EV
Sbjct: 29 RLIVRD-VNSLQILQ--LYTCLDQIQYIEWSSDSLFILCAMYKRGIVQVWSLEQPDWHCKIDEGSAGLVASCWSPDGRHILNTTEFHLRITVWSLCTKSVSYIKYPKACQHGIAFTKDGRYMALAERRDCKDFISLFVCSDWQLLRHFDTETQDLAGIEWAPNGCVLAVWDTCLEYKILLYSLDGRLLSTYSAYEWSLGIKSIAWSPSSQFLAIGSYDEKVRILNHVTWKKITEFEHPVTIANP---KIIVYKEV 277
BLAST of mRNA_Ecto-sp13_S_contig1424.3290.1 vs. uniprot
Match: A0A485K5F4_9STRA (Aste57867_1501 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K5F4_9STRA) HSP 1 Score: 232 bits (592), Expect = 6.980e-70 Identity = 113/243 (46.50%), Postives = 159/243 (65.43%), Query Frame = 1
Query: 13 RLMVRDAMDGFEIVQGGLRPCVDKIEALEWA----SDSD--LLLCAMYKRSLVEVMSVARPDWQCRVREGLAGMVKALWAPDARHVVTFSDFSLHMSVWSLSTRQLHTVRQPKAAPGCVAFSPDALIMAVATRRDCRDHLKLYDTRSWESLGEFTAETVDLTHVDFSPDGFTLCLQDTSLDYRVLFYSLAGKLVGRLEAYSHALGVKSMAWSPDGTLLSIGSYDQCARLVSPVTWKAVAVLRH 723
RL VRD IVQ + CVD I A++WA SDS+ L+ CAMYKR++V+V S+A P W C++ EG+ G++ A W PD RHV+T SDF +H +VWSL + +R PK AFSPD +AVA R DC+D + +Y+ +WE + F + D+ + +S DG + L+DT L+YR+LFYS+ G L+ + EAY +ALGVK+M+WSP G L++GSYD+ RLVS + WK++A L H
Sbjct: 17 RLCVRDVGLNMSIVQ--IFTCVDVISAIQWAPFDSSDSNIPLIYCAMYKRAIVQVFSIADPTWNCKIAEGVCGLIAAKWTPDTRHVITVSDFRIHATVWSLVDASKYVIRHPKLGVEGFAFSPDGTYLAVAERVDCKDAIGIYNVETWELVRHFDVTSYDVVEISWSLDGRAIVLRDTFLEYRLLFYSVDGVLLHQFEAYQNALGVKTMSWSPSGQFLAVGSYDEKVRLVSHMHWKSIAELDH 257 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1424.3290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1424.3290.1 >prot_Ecto-sp13_S_contig1424.3290.1 ID=prot_Ecto-sp13_S_contig1424.3290.1|Name=mRNA_Ecto-sp13_S_contig1424.3290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=325bp MVRDAMDGFEIVQGGLRPCVDKIEALEWASDSDLLLCAMYKRSLVEVMSVback to top mRNA from alignment at Ecto-sp13_S_contig1424:12198..17292- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1424.3290.1 ID=mRNA_Ecto-sp13_S_contig1424.3290.1|Name=mRNA_Ecto-sp13_S_contig1424.3290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5095bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1424:12198..17292- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1424:12198..17292- >mRNA_Ecto-sp13_S_contig1424.3290.1 ID=mRNA_Ecto-sp13_S_contig1424.3290.1|Name=mRNA_Ecto-sp13_S_contig1424.3290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=975bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1424:12198..17292- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |