prot_Ecto-sp13_S_contig14233.3285.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14233.3285.1
Unique Nameprot_Ecto-sp13_S_contig14233.3285.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length125
Homology
BLAST of mRNA_Ecto-sp13_S_contig14233.3285.1 vs. uniprot
Match: D7FU35_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU35_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.550e-15
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 0
Query:    1 MDVKFMMDRSMRRDVAFLRWPIPRLVCVLPAPESGAKPLEEED 43
            M+VKFMMDRSMR+DVAFLRWPIPRLVCVLPAPES AKPLEE+D
Sbjct:  997 MNVKFMMDRSMRQDVAFLRWPIPRLVCVLPAPESRAKPLEEKD 1039          
BLAST of mRNA_Ecto-sp13_S_contig14233.3285.1 vs. uniprot
Match: A0A6H5L2L4_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L4_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.080e-15
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 0
Query:    1 MDVKFMMDRSMRRDVAFLRWPIPRLVCVLPAPESGAKPLEEED 43
            M+VK MMDRSMR+DVAFLRWPIPRLVCVLPAPESGAKPLEE D
Sbjct:  710 MNVKLMMDRSMRQDVAFLRWPIPRLVCVLPAPESGAKPLEEGD 752          
BLAST of mRNA_Ecto-sp13_S_contig14233.3285.1 vs. uniprot
Match: A0A6H5K9A9_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9A9_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.840e-15
Identity = 37/43 (86.05%), Postives = 43/43 (100.00%), Query Frame = 0
Query:    1 MDVKFMMDRSMRRDVAFLRWPIPRLVCVLPAPESGAKPLEEED 43
            M+VKFMMDRS+++D+AFLRWPIPRLVCVLPAPESGAKPLEE+D
Sbjct:  721 MNVKFMMDRSIKQDLAFLRWPIPRLVCVLPAPESGAKPLEEKD 763          
BLAST of mRNA_Ecto-sp13_S_contig14233.3285.1 vs. uniprot
Match: A0A6H5JXU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU4_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 3.140e-12
Identity = 32/41 (78.05%), Postives = 39/41 (95.12%), Query Frame = 0
Query:    3 VKFMMDRSMRRDVAFLRWPIPRLVCVLPAPESGAKPLEEED 43
            VKFM DRS+R+D AFL+WPIPRL+C+LPAP+SGAKPLEE+D
Sbjct:  278 VKFMTDRSIRQDAAFLQWPIPRLLCLLPAPKSGAKPLEEKD 318          
BLAST of mRNA_Ecto-sp13_S_contig14233.3285.1 vs. uniprot
Match: D8LLG1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG1_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 5.660e-6
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 0
Query:   10 SMRRDVAFLRWPIPRLVCVLPAPESGAKPLEEED 43
            S+ R+VAFL WPIP L+CVLPA ESGAKPL+E D
Sbjct:  874 SLARNVAFLLWPIPSLMCVLPARESGAKPLDERD 907          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14233.3285.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FU35_ECTSI1.550e-1590.70LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5L2L4_9PHAE2.080e-1590.70Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K9A9_9PHAE2.840e-1586.05Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JXU4_9PHAE3.140e-1278.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLG1_ECTSI5.660e-673.53LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 37..124
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 25..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..36
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 32..36
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14233contigEcto-sp13_S_contig14233:369..1280 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14233.3285.1mRNA_Ecto-sp13_S_contig14233.3285.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14233 329..1313 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14233.3285.1 ID=prot_Ecto-sp13_S_contig14233.3285.1|Name=mRNA_Ecto-sp13_S_contig14233.3285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
MDVKFMMDRSMRRDVAFLRWPIPRLVCVLPAPESGAKPLEEEDIIRAVVG
HPAGLVPRRQDERQGDCDAKATAVLPLPVRHEPRRVRPRRARLRGDRIAG
MGKEGDAVCEGRSGPRLKCAQGER*
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