mRNA_Ecto-sp13_S_contig14233.3285.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14233.3285.1
Unique NamemRNA_Ecto-sp13_S_contig14233.3285.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14233.3285.1 vs. uniprot
Match: A0A6H5K9A9_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9A9_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 3.070e-42
Identity = 79/110 (71.82%), Postives = 89/110 (80.91%), Query Frame = 2 
Query:  122 PPPRAVRSPLRRKI-SFERWSATLRDWCLGGKMKGKEIVTRKLRLFFLCRYDTSLAGCGPGGQGYEVTELLEWAKKAMPSAKVGLALASSAHRVSVDVAIPEADFEATLG 448
            P P +   PL  K  SF++WSATLR+WCLGGK KGK + TRKLRLFFLC YD SLA CGPGGQGYEVTELL WAKKA+P AKVGLALAS+A +V   ++IPEADFEATLG
Sbjct:  750 PAPESGAKPLEEKDRSFDKWSATLRNWCLGGKRKGKGVATRKLRLFFLCPYDRSLAECGPGGQGYEVTELLTWAKKAIPLAKVGLALASTAFKVCTGLSIPEADFEATLG 859
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BLAST of mRNA_Ecto-sp13_S_contig14233.3285.1 vs. uniprot
Match: A0A6H5L2L4_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L4_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 3.670e-41
Identity = 78/110 (70.91%), Postives = 87/110 (79.09%), Query Frame = 2 
Query:  122 PPPRAVRSPLRR-KISFERWSATLRDWCLGGKMKGKEIVTRKLRLFFLCRYDTSLAGCGPGGQGYEVTELLEWAKKAMPSAKVGLALASSAHRVSVDVAIPEADFEATLG 448
            P P +   PL     SFE+WSATLR+WCLGGK  GK   TRKLR+FFLC YD S+A CGPGGQGYEVTEL+EWAKKAMPSAKVGLALAS A RV + +AIPE DF+ATLG
Sbjct:  739 PAPESGAKPLEEGDRSFEQWSATLRNWCLGGKRTGKGFATRKLRMFFLCPYDRSIAECGPGGQGYEVTELVEWAKKAMPSAKVGLALASIALRVCIGLAIPEVDFKATLG 848
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BLAST of mRNA_Ecto-sp13_S_contig14233.3285.1 vs. uniprot
Match: D7FU35_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU35_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 1.380e-38
Identity = 76/110 (69.09%), Postives = 84/110 (76.36%), Query Frame = 2 
Query:  122 PPPRAVRSPLRRKI-SFERWSATLRDWCLGGKMKGKEIVTRKLRLFFLCRYDTSLAGCGPGGQGYEVTELLEWAKKAMPSAKVGLALASSAHRVSVDVAIPEADFEATLG 448
            P P +   PL  K  SFE+WSATLR+WC+ GK  GK   TRKLR+FFLC YD SLA CGPGGQGYEVTELL WAKKAMP A+VG ALAS A RV + +AIPE DFEATLG
Sbjct: 1026 PAPESRAKPLEEKDRSFEQWSATLRNWCVDGKRTGKGFATRKLRVFFLCPYDRSLAECGPGGQGYEVTELLGWAKKAMPFAEVGRALASIALRVCIGLAIPEVDFEATLG 1135
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BLAST of mRNA_Ecto-sp13_S_contig14233.3285.1 vs. uniprot
Match: D8LLG1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG1_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 1.780e-26
Identity = 58/98 (59.18%), Postives = 68/98 (69.39%), Query Frame = 2 
Query:  155 RKISFERWSATLRDWCLGGKMKGKEIVTRKLRLFFLCRYDTSLAGCGPGGQGYEVTELLEWAKKAMPSAKVGLALASSAHRVSVDVAIPEADFEATLG 448
            R  SFE WS  L+  C  G   G+ + T+KLRLFFLC  D SLA CGP GQGY+VTELL WAKKA P A++GLALAS A +V   +A+P AD EA LG
Sbjct:  906 RDRSFEEWSTVLQKRCSEGNKMGRGVATQKLRLFFLCPLDMSLAECGPDGQGYQVTELLSWAKKAKPLAELGLALASIAVKVCTGLAMPAADIEAVLG 1003
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BLAST of mRNA_Ecto-sp13_S_contig14233.3285.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.240e-21
Identity = 55/114 (48.25%), Postives = 69/114 (60.53%), Query Frame = 2 
Query:  164 SFERWSATLRDWC------------------LG-GKMKGKEIVTRKLRLFFLCRYDTSLAGCGPGGQGYEVTELLEWAKKAMPSAKVGLALASSAHRVSVDVAIPEADFEATLG 448
            SFE+WS  L++WC                  LG  K + + +VTR+LRLFFLC  D SLA CGP GQGYEV E L+W +KA P+AK+GLALAS A +V   +A+    FEA  G
Sbjct:  910 SFEKWSTALKEWCASKSPAKDAKNPNRKTSILGLNKPQLRGLVTRELRLFFLCGQDKSLAECGPDGQGYEVKEFLDWVRKAAPAAKIGLALASIALKVCTGLAVSTDTFEAAFG 1023
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BLAST of mRNA_Ecto-sp13_S_contig14233.3285.1 vs. uniprot
Match: A0A6H5JXU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU4_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.100e-20
Identity = 58/99 (58.59%), Postives = 65/99 (65.66%), Query Frame = 2 
Query:  122 PPPRAVRSPLRRKI-SFERWSATLRDWCLGGKMKGKEIVTRKLRLFFLCRYDTSLAGCGPGGQGY------EVTELLEWAKKAMPSAKVGLALASSAHR 397
            P P++   PL  K  SFE WSATLR WCLGGK KGK + TRKLRLFFL R   +    GP G+        +VTELL+WAKKA P AKVGLALAS A R
Sbjct:  305 PAPKSGAKPLEEKDGSFEEWSATLRKWCLGGKRKGKGVATRKLRLFFL-RTTGASPSEGPQGKASRADVRSQVTELLKWAKKAKPFAKVGLALASIALR 402
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14233.3285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K9A9_9PHAE3.070e-4271.82Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L2L4_9PHAE3.670e-4170.91Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FU35_ECTSI1.380e-3869.09LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D8LLG1_ECTSI1.780e-2659.18LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUH6_ECTSI1.240e-2148.25LRR-GTPase of the ROCO family, incomplete sequence... [more]
A0A6H5JXU4_9PHAE1.100e-2058.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14233contigEcto-sp13_S_contig14233:329..1313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score84.0
Seed ortholog evalue5.6e-14
Seed eggNOG ortholog2880.D7FU35
Model size448
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Cds size375
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462760.7871842-UTR-Ecto-sp13_S_contig14233:328..3681681462760.7871842-UTR-Ecto-sp13_S_contig14233:328..368Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14233 329..368 -
1681462760.827993-UTR-Ecto-sp13_S_contig14233:1280..13131681462760.827993-UTR-Ecto-sp13_S_contig14233:1280..1313Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14233 1281..1313 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462760.8010643-CDS-Ecto-sp13_S_contig14233:368..4601681462760.8010643-CDS-Ecto-sp13_S_contig14233:368..460Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14233 369..460 -
1681462760.810186-CDS-Ecto-sp13_S_contig14233:728..9551681462760.810186-CDS-Ecto-sp13_S_contig14233:728..955Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14233 729..955 -
1681462760.8188877-CDS-Ecto-sp13_S_contig14233:1224..12801681462760.8188877-CDS-Ecto-sp13_S_contig14233:1224..1280Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14233 1225..1280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14233.3285.1prot_Ecto-sp13_S_contig14233.3285.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14233 369..1280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14233.3285.1

>prot_Ecto-sp13_S_contig14233.3285.1 ID=prot_Ecto-sp13_S_contig14233.3285.1|Name=mRNA_Ecto-sp13_S_contig14233.3285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
MDVKFMMDRSMRRDVAFLRWPIPRLVCVLPAPESGAKPLEEEDIIRAVVG
HPAGLVPRRQDERQGDCDAKATAVLPLPVRHEPRRVRPRRARLRGDRIAG
MGKEGDAVCEGRSGPRLKCAQGER*
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mRNA from alignment at Ecto-sp13_S_contig14233:329..1313-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14233.3285.1 ID=mRNA_Ecto-sp13_S_contig14233.3285.1|Name=mRNA_Ecto-sp13_S_contig14233.3285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=985bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14233:329..1313- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGAGGGTAGCGCGCAAGTCCTGAAAGATCAGATGGACGTCAAGTTCAT
GATGGACAGAAGCATGAGGCGGGACGTGGCCTTCCTACGGTGAGCTCTCA
TGTGGTTGTTGTTGTTGTTGTTGGTATGTGCGGTTCGAATGCATATTGTT
CGTATAACTATTTAACGCATAGCGTTAGGTGCCTTGTATGTCGAAAACGC
GTGGCTTAATGTTGCCCGTAGAACATCCCGCCTACACTCCAGCTACTTGT
ACATAGTTCCGTAGCACCCAACCCTCAGAGGTTGGGGGCAGAAGTTCATG
CGTGGATGCGAATCCTTGATGTAACACCAGGGCTCTTCGGTTTCGTTGGA
ACGCTCAGGTGGCCGATCCCCCGCCTGGTGTGCGTGCTCCCCGCCCCCGA
GAGCGGTGCGAAGCCCCTTGAGGAGGAAGATATCATTCGAGCGGTGGTCG
GCCACCCTGCGGGACTGGTGCCTCGGCGGCAAGATGAAAGGCAAGGAGAT
TGTGACGCGAAAGCTACGGCTGTTCTTCCTCTGCCGGTACGACACGAGCC
TCGCCGGGTGCGGCCCCGGAGGGCAAGGCTACGAGGTGCGCAGGACAACG
ATGCAGTTCACGTCACCTTAAGAGCACGCTCGGCTGTTGGAATATGTCTA
TTGGTTCACCTGTGTTCCCTTTTCGCCGTCGTATCAGAGACTAATCGGTG
TCACACGGTTGGTGTCTCATCATCGGTGGCCTGCAGGGCAGATGTCAGGT
CGAATGCGCGTCGTTTCCGTTGCCACACCTGCCCCTTCCGGGAAACAGTC
ATATCACTTTGAACATCGCAGCTGGTGCTCACACCCTATCGATCGCTGCC
CAGGTGACAGAATTGCTGGAATGGGCAAAGAAGGCGATGCCGTCTGCGAA
GGTAGGTCTGGCCCTCGCCTCAAGTGCGCACAGGGTGAGCGTTGACGTTG
CAATTCCCGAGGCGGACTTCGAAGCAACCCTTGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14233:329..1313-

>mRNA_Ecto-sp13_S_contig14233.3285.1 ID=mRNA_Ecto-sp13_S_contig14233.3285.1|Name=mRNA_Ecto-sp13_S_contig14233.3285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14233:329..1313- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGTCAAGTTCATGATGGACAGAAGCATGAGGCGGGACGTGGCCTT
CCTACGGTGGCCGATCCCCCGCCTGGTGTGCGTGCTCCCCGCCCCCGAGA
GCGGTGCGAAGCCCCTTGAGGAGGAAGATATCATTCGAGCGGTGGTCGGC
CACCCTGCGGGACTGGTGCCTCGGCGGCAAGATGAAAGGCAAGGAGATTG
TGACGCGAAAGCTACGGCTGTTCTTCCTCTGCCGGTACGACACGAGCCTC
GCCGGGTGCGGCCCCGGAGGGCAAGGCTACGAGGTGACAGAATTGCTGGA
ATGGGCAAAGAAGGCGATGCCGTCTGCGAAGGTAGGTCTGGCCCTCGCCT
CAAGTGCGCACAGGGTGAGCGTTGA
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