mRNA_Ecto-sp13_S_contig14232.3284.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14232.3284.1
Unique NamemRNA_Ecto-sp13_S_contig14232.3284.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14232.3284.1 vs. uniprot
Match: D7FTF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF4_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 3.520e-44
Identity = 77/80 (96.25%), Postives = 78/80 (97.50%), Query Frame = 2 
Query:  287 KAKSDAEHCSTCARYFVELCYKFQVMVHACRGLRAAKEGLNQTVLLKVLREERDSLAKRLGDCEADLKRIHHSYTEMMNP 526
            +AKSDAEHCS CARYFVELCYKFQVMVHACRGLRAAKEGLNQTVLLK LREERDSLAKRLGDCEADLKRIHHSYTEMMNP
Sbjct:  170 QAKSDAEHCSACARYFVELCYKFQVMVHACRGLRAAKEGLNQTVLLKALREERDSLAKRLGDCEADLKRIHHSYTEMMNP 249
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BLAST of mRNA_Ecto-sp13_S_contig14232.3284.1 vs. uniprot
Match: A0A6H5JEQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEQ6_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 1.090e-43
Identity = 76/80 (95.00%), Postives = 78/80 (97.50%), Query Frame = 2 
Query:  287 KAKSDAEHCSTCARYFVELCYKFQVMVHACRGLRAAKEGLNQTVLLKVLREERDSLAKRLGDCEADLKRIHHSYTEMMNP 526
            +AKSDAEHCSTC RYFVELCYKFQVMVHACRGLRAAKEGLNQTVLLKVLREERDSLAKRLGDCE +LKRIHHSYTEMMNP
Sbjct:  179 QAKSDAEHCSTCTRYFVELCYKFQVMVHACRGLRAAKEGLNQTVLLKVLREERDSLAKRLGDCETELKRIHHSYTEMMNP 258
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BLAST of mRNA_Ecto-sp13_S_contig14232.3284.1 vs. uniprot
Match: A0A836CM21_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM21_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.000e-11
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 2 
Query:  350 KFQVMVHACRGLRAAKEGLNQTVLLKVLREERDSLAKRLGDCEADLKRIHHSYTEMMNP 526
            +FQ++ HA  GLRA +EGL+  VLLK  R ER +LA++L   +A+L+RIHH+Y EM+ P
Sbjct:  233 EFQLLAHAAHGLRAVREGLSHAVLLKQARAERQALAEQLAGAQAELRRIHHTYAEMLTP 291
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14232.3284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTF4_ECTSI3.520e-4496.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEQ6_9PHAE1.090e-4395.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CM21_9STRA3.000e-1152.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14232contigEcto-sp13_S_contig14232:1427..3462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score135.6
Seed ortholog evalue2.3e-29
Seed eggNOG ortholog2880.D7FTF4
Model size528
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2EUYJ@1,2SX17@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_001140.1
Cds size528
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462760.712687-CDS-Ecto-sp13_S_contig14232:1426..15961681462760.712687-CDS-Ecto-sp13_S_contig14232:1426..1596Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14232 1427..1596 -
1681462760.7218406-CDS-Ecto-sp13_S_contig14232:2281..23501681462760.7218406-CDS-Ecto-sp13_S_contig14232:2281..2350Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14232 2282..2350 -
1681462760.7294827-CDS-Ecto-sp13_S_contig14232:2846..30791681462760.7294827-CDS-Ecto-sp13_S_contig14232:2846..3079Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14232 2847..3079 -
1681462760.7382474-CDS-Ecto-sp13_S_contig14232:3406..34621681462760.7382474-CDS-Ecto-sp13_S_contig14232:3406..3462Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14232 3407..3462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14232.3284.1prot_Ecto-sp13_S_contig14232.3284.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14232 1427..3462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14232.3284.1

>prot_Ecto-sp13_S_contig14232.3284.1 ID=prot_Ecto-sp13_S_contig14232.3284.1|Name=mRNA_Ecto-sp13_S_contig14232.3284.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=176bp
LPSEAAIVTDSAKSEVPRSAYSVETIERLFRRFRQVDTTDTGGSSIQAVS
ATNQLLLIRERLQAGLSSRLLELKTEMDKEFGTAFVDMESYLRMEKGEVG
CGALLYVREILRRALLQVPGDGARLPRAPRGKGRLEPNCSAQGPEGGERL
AGEAPGGLRGGPQEDTPQLHRDDEP*
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mRNA from alignment at Ecto-sp13_S_contig14232:1427..3462-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14232.3284.1 ID=mRNA_Ecto-sp13_S_contig14232.3284.1|Name=mRNA_Ecto-sp13_S_contig14232.3284.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2036bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14232:1427..3462- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCCTTCAGAGGCAGCGATCGTCACAGATTCTGCTAAGAGCGAAGTACC
TCGCAGGTATTCATTGCGTTGGTGTGTTCGGGAACGAATAGCGAAAAAAG
ACTTGTGCGCGCCAACAGCTAACACATCGCGGGACAAGCACGCTGCCGCA
CTAGTGAGCCTGTGGAACATCTCACTCCTACATAGGTCGTTTGGGAAAGT
CCTAGCGCGCGGCGTCGAAACACACAGGCCTGAGCGTCTTCGTTTCTCGC
CAAAACGCATGCCACACACAAAGCACGCCGCGACCTCTGCAGATACGGAA
CCAGTGGCGTATCCCAAGACAGATCGCACAGCGGTGACCATGGCCACCTT
AAAAAACACCACTACTTTTCCGCACCAAAACAGCGCCTACAGCGTGGAAA
CTATCGAGCGGCTATTCCGGAGATTTCGGCAGGTGGACACCACCGACACC
GGTGGCAGCAGCATCCAAGCCGTCTCGGCCACGAACCAGCTCCTCCTCAT
CCGCGAGCGGCTGCAGGCGGGGCTGAGCTCTCGTCTTCTGGAGCTCAAGA
CGGAGATGGACAAGGAGTTCGGCACCGCTTTCGTCGATATGGAGAGCTAC
CTCAGGATGGAGAAAGGTGCAATAGAAGCATGAATGTTGTTGGCCGTTAG
GGGCGTCTTGCACCGGGCGCGTTTTGTCGAATGTTCGGAGTGTTTCTATG
TTGGGCAACTTGACGAAGCGATTGCGAAGGCAGAAAGAAGGGAAAGTTGA
AGAAACTAGTGGGAGCTACTTCAATATGATCTACCATTCCAAATTTTTGA
AAAATCTTTCCAATTTTCACATGATGTCAACACCTTTGTAAGTCCTTCGA
AAGAACATCCCCGTAGATCGCACGCTACGCTCTTTTGTGAGCCCTTTTCC
CTACTCCTTCGTGCACTCGACGAACGCCTTGGCTGCTCTAGACTATGCTC
TACCATGTGCCGATGTACAGGGCTTTTAGTTGGTGAAGAGAGGTTGGTTT
GGTCTACCGTATTGCCAATGGGGTACGGTGGCGTGTTGGACACGCGATAA
ACCAGTGCCCAACGGCGAGACCGTTCGTGACGTACTCTCCCCGTCCGATG
CAAGACACTCAGGCGAAGTCGGATGCGGAGCACTGCTCTACGTGCGCGAG
ATACTTCGTCGAGCTCTGCTACAAGTTCCAGGTGATTTGCTATTTCTAGG
AAGCACGAAAGTCGCCCCGCTACTAGAGAGCACCCTCGTACAAAAGGGGA
TACGCGAGAAAAATATGTCCAATGAGGTAGTACTTATGCACACTTTACCG
TACGAGTGCAGGCGAATGCAAGGCAGGTGTATTCGTGATGGATTTTCAGC
GATCGATTGCTCCACAGGCAAGAGGGAACGAAGAAAATCGACCGCCGCGC
GCAAGGAATTCCTCCACGAAATTCTCCCCAAACCACCCGTTTTCGGCAAT
TTCTCGGGCTTGTCGTTAGTCGATCGTCTACAAATGCTTTTGCCGACATC
CTCTACAGAAATTCACTTCCGTATATGTAGATGGACGAAATGCCCAGAGT
CGTGGCCCTCACTCTTTTTTGTCTTTCATGGAGAACCTGGACGGCTGGAG
ATGTCGACTTCTAATCGGGGCAACGACTCTTGCACTTGGGGTGCTTGACT
TGTCACCTCGGAACGGGCTTAACTCCTCTGCGTCGAGCGCGTAGAAGACT
CTCGCATTTGATTATCTCGTGCGGCCATGTCTGGTGATAGTGACCTCAAA
AGTCAATGATCCTCGAACCCGCTGCTGTTACCCAAGATTTTCGTCGCAAA
CCCATGACGGGTCCATAAAACGATTGCGGCCTATCTGTTCCTCTTAAAAA
AACACACGACCCGCAGGTGATGGTGCACGCCTGCCGAGGGCTCCGCGCGG
CAAAGGAAGGCTTGAACCAAACTGTTCTGCTCAAGGTCCTGAGGGAGGAG
AGAGACTCGCTGGCGAAGCGCCTGGGGGACTGCGAGGCGGACCTCAAGAG
GATACACCACAGCTACACCGAGATGATGAACCCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14232:1427..3462-

>mRNA_Ecto-sp13_S_contig14232.3284.1 ID=mRNA_Ecto-sp13_S_contig14232.3284.1|Name=mRNA_Ecto-sp13_S_contig14232.3284.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14232:1427..3462- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCCTTCAGAGGCAGCGATCGTCACAGATTCTGCTAAGAGCGAAGTACC
TCGCAGCGCCTACAGCGTGGAAACTATCGAGCGGCTATTCCGGAGATTTC
GGCAGGTGGACACCACCGACACCGGTGGCAGCAGCATCCAAGCCGTCTCG
GCCACGAACCAGCTCCTCCTCATCCGCGAGCGGCTGCAGGCGGGGCTGAG
CTCTCGTCTTCTGGAGCTCAAGACGGAGATGGACAAGGAGTTCGGCACCG
CTTTCGTCGATATGGAGAGCTACCTCAGGATGGAGAAAGGCGAAGTCGGA
TGCGGAGCACTGCTCTACGTGCGCGAGATACTTCGTCGAGCTCTGCTACA
AGTTCCAGGTGATGGTGCACGCCTGCCGAGGGCTCCGCGCGGCAAAGGAA
GGCTTGAACCAAACTGTTCTGCTCAAGGTCCTGAGGGAGGAGAGAGACTC
GCTGGCGAAGCGCCTGGGGGACTGCGAGGCGGACCTCAAGAGGATACACC
ACAGCTACACCGAGATGATGAACCCTGA
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