mRNA_Ecto-sp13_S_contig14230.3283.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14230.3283.1
Unique NamemRNA_Ecto-sp13_S_contig14230.3283.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14230.3283.1 vs. uniprot
Match: A0A6H5K7G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7G4_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 5.460e-83
Identity = 137/162 (84.57%), Postives = 141/162 (87.04%), Query Frame = 1 
Query:    1 MSDGGAEAVDGKEKAAVAATPVVTTDLWREFAVTVIRYNEPAAADRDTAGHVPSASCTNDSNSPTCSFGENHRYHHTLTRGRRSKPLRALHPPSRGGVHGHFFRHVCLEGDPTVLGPPLRATIAASGSGTGRRETAIATVSLADVSKAAEARFRRPRGSIPF 486
            +SDGGAEAV+GKEKAA AAT VV TDLWREFAVTVIRYN PA ADRD  G     S T+ SN PTCSFG+NHRYHH LTR RRSKPLRALHPPSRGG HGHFFRHVCLEGDPTVLGPPLRATIAASGSGTGRRETAIATVSLADVSKAAEARFRRPR  I F
Sbjct:   85 ISDGGAEAVNGKEKAAAAATAVVKTDLWREFAVTVIRYNGPAVADRDIGG-----SGTSGSNCPTCSFGQNHRYHHNLTRDRRSKPLRALHPPSRGGAHGHFFRHVCLEGDPTVLGPPLRATIAASGSGTGRRETAIATVSLADVSKAAEARFRRPRALIKF 241
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BLAST of mRNA_Ecto-sp13_S_contig14230.3283.1 vs. uniprot
Match: D7FLN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLN6_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 6.920e-8
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 3 
Query:  468 KGINTLPEDHGTEWFSDTSPAAVQR 542
            KGINTLPEDHGTEWFSDTSPAAVQR
Sbjct:   30 KGINTLPEDHGTEWFSDTSPAAVQR 54
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14230.3283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K7G4_9PHAE5.460e-8384.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLN6_ECTSI6.920e-8100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14230contigEcto-sp13_S_contig14230:1768..3825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size546
Hectar predicted targeting categoryother localisation
Exons2
Cds size393
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462760.6601272-UTR-Ecto-sp13_S_contig14230:1767..19181681462760.6601272-UTR-Ecto-sp13_S_contig14230:1767..1918Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14230 1768..1918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462760.6697178-CDS-Ecto-sp13_S_contig14230:1918..22371681462760.6697178-CDS-Ecto-sp13_S_contig14230:1918..2237Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14230 1919..2237 +
1681462760.6812267-CDS-Ecto-sp13_S_contig14230:3751..38251681462760.6812267-CDS-Ecto-sp13_S_contig14230:3751..3825Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14230 3752..3825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14230.3283.1prot_Ecto-sp13_S_contig14230.3283.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14230 1919..3825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14230.3283.1

>prot_Ecto-sp13_S_contig14230.3283.1 ID=prot_Ecto-sp13_S_contig14230.3283.1|Name=mRNA_Ecto-sp13_S_contig14230.3283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
MSQALLAPTIQTAPPAASVKTTATTTPSPAVDAVSPCGLCIRRREAVCTA
ISLDTFALKETPQCSDRRCERRSLPAVAGPGGGRRRSRPSAWRTFRKRRR
LDFDDQGDQYPSRGPWDGVVQRHVPSGGTAP
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mRNA from alignment at Ecto-sp13_S_contig14230:1768..3825+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14230.3283.1 ID=mRNA_Ecto-sp13_S_contig14230.3283.1|Name=mRNA_Ecto-sp13_S_contig14230.3283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2058bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14230:1768..3825+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCAGACGGAGGGGCGGAAGCAGTGGACGGGAAAGAAAAGGCGGCGGT
GGCAGCGACACCGGTGGTCACGACCGATCTCTGGCGCGAGTTTGCGGTGA
CGGTGATTCGGTACAACGAACCAGCAGCCGCTGATCGCGACACGGCGGGG
CATGTCCCAAGCGCTTCTTGCACCAACGATTCAAACAGCCCCACCTGCAG
CTTCGGTGAAAACCACCGCTACCACCACACCCTCACCCGCGGTAGACGCA
GTAAGCCCTTGCGGGCTTTGCATCCGCCGTCGAGAGGCGGTGTGCACGGC
CATTTCTTTAGACACGTTTGCCTTGAAGGAGACCCCACAGTGCTCGGACC
GCCGCTGCGAGCGACGATCGCTGCCAGCGGTAGCGGGACCGGGCGGAGGG
AGACGGCGATCGCGACCGTCAGCCTGGCGGACGTTTCGAAAGCGGCGGAG
GCTAGATTTCGACGACCAAGGTGCTTGGGAGTGCACTGCATGATCGGTTT
CTCTTTTCCGTTTCCTCGAAACTGTCGCCATTGGTCGTGGAGTAGGGGTC
CCTTGGGCTGAACAAGCCAAGCTGTCGGAACTGCGCGGCGGTGTGGTGCC
TGATTTCCTTACGATTGGCGCGGAATCCCGGCGTTCAATCCAGCTTCAGC
GAAGGCTTTCGTTTGTATGATCCGTGAAAATTTTGTCATGTTAGTAAGAG
GGACGTGATTTTTCATTTGGTAGGCTGCGGTATCGGTGTACTCCTGTGAT
CGATCATGTATTTTGTTTTTCGGCAATGCTCACCATCCTCTCTTTGAACA
GGAAGGTTTTACGTTTTCGGCTTGCAAGGCAAAGTTCTTTGAAGCAGCCG
AAGCAGACTTTTTGCTGTTGAACCCGTGACCCTCTACGAGAGTCTTGTGG
TCATAGGACTTTGACTACATGCGATGGTGATAACGATTTCGGCCCTGCTT
TCCACGATTCCATCGACGCGGAGAACTCTCAGCTAAATTGGACGATCTTG
TACCCCGACGGCTGTCTTCAATGCGTTACCGCGGCAGGGCACTGATTAAG
TTTCTGTGGCTGTGGATCCGCTACAGCAACACCGAACACCGGCTGACGAC
CGTTCCAACGATTGAGTTGACCCCGAACAATTTCCAGTTCACGTATAGAC
CACTGTGCGGCCGAAGGAGAGGCACAGGGGGCAGGAGCGCCGCGAAAACT
GCAGGGGGGTCAGGGTCGTCGCGGAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAAGAAGACAAATTCATGTTGTGTGACAACGACGGTGTTGCTTAGCG
AAGCTCTCGGTGTGTTCACGAAGCTCTTCGTGCTCTGCCACCGCTGCCGC
CGCCCGTGCACCACGCTGTTCGCTAACGAAGACGACGCAAACAACGTTAC
ACAAAATGGTACTGGGGGAAAGGAGTCAGCAGGAAGAGCGGCGGCGGTGA
TACCCGAGGTTCGAGGACGACGAGTGATGCTCTGGGTAGAGTGTCAAGAA
GAGTGGTGCGGCTGGAGGTCGGGTATGAGTGTAGCTGCCGGCGGCGGCGG
CAGCACGGCCCCACCGCCTTGGCTGGCCAAGTTTGCGAGATATGTACAAA
GCCGTGCGTGGAAGGTGCGGTATTGCATGAAAAGGGAATGCATTTGTTTG
TGCGTGTTGCCACTACTGATCTCATGGCGTTTTGCCGTGGGCGCTGTGTC
TTCATCAACGTTATGCTTTGCGAGTGACAGGTTCAGGGGACCAAATCCAA
TCTATGTCTGGCTGGTTCCCCCCAGATTTCGTGTCGGGGTGCGTTTTTCG
TGTGACAGCTCTCCACATTTAGGCTCTCTTTCCTACCAATTCAAAGGTTC
AGCGTCACACCAAACTACGGAGGTTGGCAATAACTTTGACCCGTTCGCCC
CCCTCCCCTTGCATGCCATGGTACCCACTTCATATGAACAATGCACCCAC
TGGTGCTCTTGCTGTCGCATTCTCCGGTGATCAGGGGATCAATACCCTTC
CCGAGGACCATGGGACGGAGTGGTTCAGCGACACGTCCCCAGCGGCGGTA
CAGCGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14230:1768..3825+

>mRNA_Ecto-sp13_S_contig14230.3283.1 ID=mRNA_Ecto-sp13_S_contig14230.3283.1|Name=mRNA_Ecto-sp13_S_contig14230.3283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14230:1768..3825+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCCAAGCGCTTCTTGCACCAACGATTCAAACAGCCCCACCTGCAGC
TTCGGTGAAAACCACCGCTACCACCACACCCTCACCCGCGGTAGACGCAG
TAAGCCCTTGCGGGCTTTGCATCCGCCGTCGAGAGGCGGTGTGCACGGCC
ATTTCTTTAGACACGTTTGCCTTGAAGGAGACCCCACAGTGCTCGGACCG
CCGCTGCGAGCGACGATCGCTGCCAGCGGTAGCGGGACCGGGCGGAGGGA
GACGGCGATCGCGACCGTCAGCCTGGCGGACGTTTCGAAAGCGGCGGAGG
CTAGATTTCGACGACCAAGGGGATCAATACCCTTCCCGAGGACCATGGGA
CGGAGTGGTTCAGCGACACGTCCCCAGCGGCGGTACAGCGCCG
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