mRNA_Ecto-sp13_S_contig1422.3277.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1422.3277.1 vs. uniprot
Match: D8LR87_ECTSI (Binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR87_ECTSI) HSP 1 Score: 365 bits (938), Expect = 5.840e-119 Identity = 181/187 (96.79%), Postives = 184/187 (98.40%), Query Frame = 1
Query: 1 KGMERFRRGEVAGSVSDFDRAISLQPRLEAYLWQRGISLYYADQFEEGSRQFRKDVALNPNDTEEAIWTFMCESRIPSVGFATAKQRLVKISNERRPYMRAAYSLFKGDASESDLAKQMEVSLGSNGVAESGAPYFYANLYLGLYSEAKGDDVLARKYISAAVRSPYSKSGDYMCDVARVHQQARGW 561
+GMERFRRGEVAGSVSDFDRAISLQPRLEAY+WQRGISLYYAD+FEEGSRQFRKDVALNPNDTEEAIWTFMCESRIPSVGFATAKQRLVKISNERRPYMRAAYSLFKGDASESDLAKQME SLGSNG A SGAPYFYANLYLGLYSEAKGDDVLARKYISAAVRSPYSKSGDYMCDVARVHQQARGW
Sbjct: 22 RGMERFRRGEVAGSVSDFDRAISLQPRLEAYMWQRGISLYYADRFEEGSRQFRKDVALNPNDTEEAIWTFMCESRIPSVGFATAKQRLVKISNERRPYMRAAYSLFKGDASESDLAKQMEGSLGSNGAAGSGAPYFYANLYLGLYSEAKGDDVLARKYISAAVRSPYSKSGDYMCDVARVHQQARGW 208
BLAST of mRNA_Ecto-sp13_S_contig1422.3277.1 vs. uniprot
Match: A0A6H5L4Y5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y5_9PHAE) HSP 1 Score: 367 bits (942), Expect = 1.270e-118 Identity = 181/187 (96.79%), Postives = 184/187 (98.40%), Query Frame = 1
Query: 1 KGMERFRRGEVAGSVSDFDRAISLQPRLEAYLWQRGISLYYADQFEEGSRQFRKDVALNPNDTEEAIWTFMCESRIPSVGFATAKQRLVKISNERRPYMRAAYSLFKGDASESDLAKQMEVSLGSNGVAESGAPYFYANLYLGLYSEAKGDDVLARKYISAAVRSPYSKSGDYMCDVARVHQQARGW 561
+GMERFRRGEVAGSVSDFDRAISLQPRLEAY+WQRGISLYYADQFEEGSRQFRKDVALNPNDTEEAIWTFMCESRIPSVGFATAKQRLVKISNERRPYMRAAYSLFKGDASESDLAKQMEVSLGSNGVA SGAPYFY NLYLGLYSEAKGDDVLARKYISAAVRSPY+KSGDYMCDVARVHQQ RGW
Sbjct: 83 RGMERFRRGEVAGSVSDFDRAISLQPRLEAYMWQRGISLYYADQFEEGSRQFRKDVALNPNDTEEAIWTFMCESRIPSVGFATAKQRLVKISNERRPYMRAAYSLFKGDASESDLAKQMEVSLGSNGVAGSGAPYFYVNLYLGLYSEAKGDDVLARKYISAAVRSPYAKSGDYMCDVARVHQQVRGW 269
BLAST of mRNA_Ecto-sp13_S_contig1422.3277.1 vs. uniprot
Match: A0A7S1JEY7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JEY7_9EUGL) HSP 1 Score: 226 bits (576), Expect = 8.500e-64 Identity = 105/186 (56.45%), Postives = 138/186 (74.19%), Query Frame = 1
Query: 4 GMERFRRGEVAGSVSDFDRAISLQPRLEAYLWQRGISLYYADQFEEGSRQFRKDVALNPNDTEEAIWTFMCESRIPSVGFATAKQRLVKISNERRPYMRAAYSLFKGDASESDLAKQMEVSLGSNGVAESGAPYFYANLYLGLYSEAKGDDVLARKYISAAVRSPYSKSGDYMCDVARVHQQARGW 561
GM++F +G+V GS+ DFDR I+ PR+E Y+WQRG+SLYYA++ +EGSRQFR+DVA+NPNDTEEAIW F+CE+R PS+GF A+ ++++ + RPYMRAAY LF+G +E L + A G FY+NLYLGLY+EAKGD V A++YISAAV SPY +SGDYM +A VH+ RGW
Sbjct: 167 GMQKFTKGDVQGSIEDFDRIIAGAPRMEPYMWQRGLSLYYAEELQEGSRQFRRDVAVNPNDTEEAIWAFLCEARDPSIGFEKARTNMLQVGRDSRPYMRAAYDLFRGTGTEEGLKQ----------AAVDGPSEFYSNLYLGLYAEAKGDSVAAQQYISAAVNSPYRRSGDYMYALAVVHKNLRGW 342
BLAST of mRNA_Ecto-sp13_S_contig1422.3277.1 vs. uniprot
Match: A0A835ZJI4_9STRA (Binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJI4_9STRA) HSP 1 Score: 216 bits (549), Expect = 8.030e-62 Identity = 107/187 (57.22%), Postives = 134/187 (71.66%), Query Frame = 1
Query: 1 KGMERFRRGEVAGSVSDFDRAISLQPRLEAYLWQRGISLYYADQFEEGSRQFRKDVALNPNDTEEAIWTFMCESRIPSVGFATAKQRLVKISNERRPYMRAAYSLFKGDASESDLAKQMEVSLGSNGVAESGAPYFYANLYLGLYSEAKGDDVLARKYISAAVRSPYSKSGDYMCDVARVHQQARGW 561
+GMERFR+ +V S+SDFDRA+ L P L YLWQRG+SLYYAD+F EG+ QFR DV++NPNDTEEAIW F CE+R ++GF A++RL+K+ + RPYMR AYSLF+G SE DLA + S +FYANLYLGLY+E + + LAR YI AV S Y +GDYMC +ARVHQ+ RGW
Sbjct: 26 RGMERFRKAKVQESISDFDRALQLSPALGPYLWQRGLSLYYADRFAEGAAQFRLDVSVNPNDTEEAIWAFACEAR--TLGFQEARKRLLKVGQDTRPYMRTAYSLFQGSTSEQDLAMVGQTDDRS---------HFYANLYLGLYAECREEVDLARHYIGLAVGSKYCATGDYMCSLARVHQKVRGW 201
BLAST of mRNA_Ecto-sp13_S_contig1422.3277.1 vs. uniprot
Match: A0A7S0D5P5_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D5P5_MICPS) HSP 1 Score: 188 bits (478), Expect = 1.620e-51 Identity = 95/188 (50.53%), Postives = 128/188 (68.09%), Query Frame = 1
Query: 1 KGMERFRRGEVAGSVSDFDRAISLQPRLEAYLWQRGISLYYADQFEEGSRQFRKDVALNPNDTEEAIWTFMCESRIPSVGFATAKQRLVKISNERRPYMRAAYSLFKGDASESDLAKQMEVSLGSNGVAESGAPYFYANLYLGLYSEAKGDDVLARKYISAAVRSPY-SKSGDYMCDVARVHQQARGW 561
+GM +F +G+V GS++DFD I+ P Y+WQRG+SLYYA++ EGS QFR+DVA+NPNDTEEA+W F+CE+R +GF A++ L+ + + R YMRAAY+LF G E L ++ +NG A A FY LYLGLY EAKGD+ A+ + AAV +PY S+SGDYM +A VH + RGW
Sbjct: 35 RGMAKFTQGDVDGSIADFDAVIAAAPGRAPYMWQRGLSLYYAERLREGSAQFRRDVAVNPNDTEEAVWAFLCEARDKDIGFEKAREDLLVVGRDPRAYMRAAYALFAGTGDEDSLR-----AVAANGGA---AEDFYTWLYLGLYREAKGDENGAKAAVLAAVATPYGSRSGDYMAALAEVHAKRRGW 214
BLAST of mRNA_Ecto-sp13_S_contig1422.3277.1 vs. uniprot
Match: A0A3B5Y5A5_WHEAT (Uncharacterized protein n=14 Tax=Triticeae TaxID=147389 RepID=A0A3B5Y5A5_WHEAT) HSP 1 Score: 189 bits (480), Expect = 3.650e-51 Identity = 96/188 (51.06%), Postives = 128/188 (68.09%), Query Frame = 1
Query: 1 KGMERFRRGEVAGSVSDFDRAISLQPRLEAYLWQRGISLYYADQFEEGSRQFRKDVALNPNDTEEAIWTFMCESRIPSVGFATAKQRLVKISNERRPYMRAAYSLFKGDASESDLAKQMEVSLGSNGVAESGAPYFYANLYLGLYSEAKGDDVLARKYISAAVRSPY-SKSGDYMCDVARVHQQARGW 561
+GM+ F++G+VAGSV++FDRAI L PR +AYLWQRG+SLYY D+FEE + QFR DVA NPNDTEE+IW F+CE+++ G A++R +++ +RRP MR AY+LFK LA S G FYA+LY GLY E++ D LA+ +I AA ++PY S+SGDYM +A VH Q R W
Sbjct: 83 RGMQLFQQGDVAGSVAEFDRAIELDPRQKAYLWQRGLSLYYLDRFEEAAEQFRLDVAANPNDTEESIWCFLCEAQL--YGVEEARKRFLEVGLDRRPVMREAYALFKDGGDPEKLASNFSTS--------PGGELFYASLYAGLYYESQKDADLAKSHIVAACKTPYGSRSGDYMASLAVVHCQCRNW 260
BLAST of mRNA_Ecto-sp13_S_contig1422.3277.1 vs. uniprot
Match: A0A7S2B9N6_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B9N6_9STRA) HSP 1 Score: 188 bits (477), Expect = 7.590e-51 Identity = 101/190 (53.16%), Postives = 128/190 (67.37%), Query Frame = 1
Query: 1 KGMERFRRGEVAGSVSDFDRAISLQPRLEAYLWQRGISLYYADQFEEGSRQFRKDVALNPNDTEEAIWTFMCESRIPSVGFATAKQRLVKISNERRPYMRAAYSLFKGDASESDLAKQMEVSLGSNGVAESGAPYFYANLYLGLYSEAKGDDVLARKYISAAVRSPYSKSG---DYMCDVARVHQQARGW 561
+GM+ FR+G+VAGS+ FD AI+ R YLWQRG+SLYYA +FEEG+ QFR+DVA NPNDTEEAIWTF+CE++ + GF A+++++K+ + RP MR LF GDASE DLA + G AE FYA LYLGLY+EAKGD V A+ YI AV S Y K DYM ++ VH + RGW
Sbjct: 75 RGMQAFRKGDVAGSLEQFDAAIAADERYTLYLWQRGLSLYYAGKFEEGAVQFRRDVAANPNDTEEAIWTFLCEAQ--TNGFEAARKQMLKVGKDSRPIMRMVNELFLGDASEEDLATAGHKA-GPGSRAE-----FYALLYLGLYNEAKGDAVHAKGYIQQAVSSAYGKGNPDPDYMYSLSVVHARERGW 256
BLAST of mRNA_Ecto-sp13_S_contig1422.3277.1 vs. uniprot
Match: A0A7S0D7J5_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D7J5_MICPS) HSP 1 Score: 188 bits (478), Expect = 9.910e-51 Identity = 95/188 (50.53%), Postives = 128/188 (68.09%), Query Frame = 1
Query: 1 KGMERFRRGEVAGSVSDFDRAISLQPRLEAYLWQRGISLYYADQFEEGSRQFRKDVALNPNDTEEAIWTFMCESRIPSVGFATAKQRLVKISNERRPYMRAAYSLFKGDASESDLAKQMEVSLGSNGVAESGAPYFYANLYLGLYSEAKGDDVLARKYISAAVRSPY-SKSGDYMCDVARVHQQARGW 561
+GM +F +G+V GS++DFD I+ P Y+WQRG+SLYYA++ EGS QFR+DVA+NPNDTEEA+W F+CE+R +GF A++ L+ + + R YMRAAY+LF G E L ++ +NG A A FY LYLGLY EAKGD+ A+ + AAV +PY S+SGDYM +A VH + RGW
Sbjct: 95 RGMAKFTQGDVDGSIADFDAVIAAAPGRAPYMWQRGLSLYYAERLREGSAQFRRDVAVNPNDTEEAVWAFLCEARDKDIGFEKAREDLLVVGRDPRAYMRAAYALFAGTGDEDSLR-----AVAANGGA---AEDFYTWLYLGLYREAKGDENGAKAAVLAAVATPYGSRSGDYMAALAEVHAKRRGW 274
BLAST of mRNA_Ecto-sp13_S_contig1422.3277.1 vs. uniprot
Match: A0A7R9Y5R2_MICPS (Hypothetical protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9Y5R2_MICPS) HSP 1 Score: 184 bits (467), Expect = 2.220e-49 Identity = 97/193 (50.26%), Postives = 126/193 (65.28%), Query Frame = 1
Query: 1 KGMERFRRGEVAGSVSDFDRAISLQPRLEAYLWQRGISLYYADQFEEGSRQFRKDVALNPNDTEEAIWTFMCESRIPSVGFATAKQRLVKISNERRPYMRAAYSLFKGDASES---DLAKQMEVSLGSNGVAESGAPYFYANLYLGLYSEAKGDDVLARKYISAAVRSPYSK-SGDYMCDVARVHQQARGW*E 567
+GM +F R +V GSV+DFD+ I+L R Y+WQRG+SLYY D F+ G+ QFR+DVA+NPNDTEEAIW F+CE+R P F AK+ ++ + + R YMR AY+LF GD SE ++AK+ S A FYA LYLGLY E++GD AR I+AA S Y + SGDYM +A VH + RGW E
Sbjct: 81 RGMAKFARDDVEGSVADFDQVIALDGRRAPYMWQRGLSLYYLDDFDAGAAQFRRDVAVNPNDTEEAIWAFLCEARSPRGSFEGAKKNMLTVGPDPRGYMREAYALFAGDGSEERMREIAKR------------SAADEFYAKLYLGLYKESRGDAEGARVDIAAAANSAYGRGSGDYMAALADVHLKRRGWVE 261
BLAST of mRNA_Ecto-sp13_S_contig1422.3277.1 vs. uniprot
Match: W7U3Q5_9STRA (Tetratricopeptide TPR2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3Q5_9STRA) HSP 1 Score: 184 bits (467), Expect = 2.430e-49 Identity = 98/189 (51.85%), Postives = 127/189 (67.20%), Query Frame = 1
Query: 1 KGMERFRRGEVAGSVSDFDRAISLQ-PRLEAYLWQRGISLYYADQFEEGSRQFRKDVALNPNDTEEAIWTFMCESRIPSVGFATAKQRLVKISNERRPYMRAAYSLFKGDASESDLAKQMEVSLGSNGVAESGAPYFYANLYLGLYSEAKGDDVLARKYISAAVRSPYSKSG-DYMCDVARVHQQARGW 561
+GME FRRG+V GS+ FD A+ L +LE YLWQRG+SLYYA ++ EG+ QFRKDVA+NP DTEEAIW F+CE+++ GF A+++++ + + RPYMR AY LFKG SE DLAK+ G S FYA LYLGLY+EA+ + AR YI A+V +PY + DYM +ARVH R W
Sbjct: 85 EGMELFRRGDVEGSIMYFDEALLLGGAQLEPYLWQRGLSLYYAGRYREGAEQFRKDVAVNPADTEEAIWAFLCEAQVD--GFEEARRKMLIVQTDPRPYMRRAYELFKGTCSEEDLAKE--------GANLSSPAAFYALLYLGLYAEARDEADKARNYIHASVATPYGNANRDYMAGLARVHLIIRKW 263 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1422.3277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1422.3277.1 >prot_Ecto-sp13_S_contig1422.3277.1 ID=prot_Ecto-sp13_S_contig1422.3277.1|Name=mRNA_Ecto-sp13_S_contig1422.3277.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=186bp MERFRRGEVAGSVSDFDRAISLQPRLEAYLWQRGISLYYADQFEEGSRQFback to top mRNA from alignment at Ecto-sp13_S_contig1422:40..6226+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1422.3277.1 ID=mRNA_Ecto-sp13_S_contig1422.3277.1|Name=mRNA_Ecto-sp13_S_contig1422.3277.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6187bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1422:40..6226+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1422:40..6226+ >mRNA_Ecto-sp13_S_contig1422.3277.1 ID=mRNA_Ecto-sp13_S_contig1422.3277.1|Name=mRNA_Ecto-sp13_S_contig1422.3277.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1422:40..6226+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |