mRNA_Ecto-sp13_S_contig14213.3272.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14213.3272.1
Unique NamemRNA_Ecto-sp13_S_contig14213.3272.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14213.3272.1 vs. uniprot
Match: D7FV81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV81_ECTSI)

HSP 1 Score: 487 bits (1253), Expect = 2.560e-171
Identity = 242/256 (94.53%), Postives = 246/256 (96.09%), Query Frame = 3 
Query:  108 LVFPIPTGTVNLYIGNCCGLLKFVLNPEAGVCVRRCAAQVKAQMPRGGGGAGSSSGSKGPAPLGKQDACKEAQTAMRAQVIGPFENHGQCKLSMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGGGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVLYT 875
            LVFPIPTGTVN+Y+ NCCGLLK VLN EAGVCVRRCA QV+A MPRGGGGAGSSSGSKG APLGKQDA  EAQTAMRAQVIGPFENHGQCKLSMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNG GGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKV+ T
Sbjct:   42 LVFPIPTGTVNVYLRNCCGLLKLVLNLEAGVCVRRCAGQVEAHMPRGGGGAGSSSGSKGAAPLGKQDAFNEAQTAMRAQVIGPFENHGQCKLSMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGSGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLT 297
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BLAST of mRNA_Ecto-sp13_S_contig14213.3272.1 vs. uniprot
Match: A0A2P6VMN0_9CHLO (TATA-box-binding 2 n=2 Tax=Chlorella clade TaxID=2511126 RepID=A0A2P6VMN0_9CHLO)

HSP 1 Score: 171 bits (432), Expect = 1.150e-48
Identity = 88/161 (54.66%), Postives = 116/161 (72.05%), Query Frame = 3 
Query:  393 NVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGGGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVLYT 875
            NV AT +++C +DLK + + ARNAEYNPKRF+A I+R+    EPK+TAL+F +GK+V TG++S A    A + +A+IL KL       S+ ++F   ++ ++QNMV + DV FPIRLEGL AS    FC+YEPELFPGLIYRM DPKI  LIFVSGKV+ T
Sbjct:   32 NVVATVNLECKLDLKNIALHARNAEYNPKRFAAVIMRI---REPKSTALIFHSGKMVCTGTKSEAEARTASRKYAKILQKL-------SYSVSF---KEFKIQNMVGSCDVKFPIRLEGL-ASTHAMFCSYEPELFPGLIYRMADPKIVLLIFVSGKVVLT 178
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BLAST of mRNA_Ecto-sp13_S_contig14213.3272.1 vs. uniprot
Match: A0A1D2AC59_AUXPR (Uncharacterized protein n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AC59_AUXPR)

HSP 1 Score: 170 bits (431), Expect = 1.440e-48
Identity = 89/161 (55.28%), Postives = 116/161 (72.05%), Query Frame = 3 
Query:  393 NVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGGGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVLYT 875
            NV AT +++C +DLK + +RARNAEYNPKRF+A I+R+    EPK+TAL+F +GK+V TG++S      A + +ARIL KL+N        + F   ++ ++QNMV + DV FPIRLEGL AS+   FC+YEPELFPGLIYRM DPKI  LIFVSGKV+ T
Sbjct:   28 NVVATVNLECKLDLKDIALRARNAEYNPKRFAAVIMRI---REPKSTALIFASGKMVCTGAKSEQESRLAARKYARILQKLEN-------PVIF---KEFKIQNMVGSCDVRFPIRLEGL-ASSHSVFCSYEPELFPGLIYRMVDPKIVLLIFVSGKVVLT 174
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BLAST of mRNA_Ecto-sp13_S_contig14213.3272.1 vs. uniprot
Match: A0A1Y1HVM1_KLENI (TATA-box binding protein 1/2 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HVM1_KLENI)

HSP 1 Score: 167 bits (424), Expect = 2.220e-47
Identity = 90/164 (54.88%), Postives = 118/164 (71.95%), Query Frame = 3 
Query:  384 SMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGGGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVLYT 875
            ++ N+ ATA+M C +DLK + M+ARNAEYNPKRF+A IIR+    EPK TAL+F +GK+V TG++S  +   A + +ARI+ KL    G P   + F   +D ++QN+VA+ DV FPIRLEGL  ++Q  F NYEPELFPGLIYRM+ PKI  LIFVSGKV+ T
Sbjct:   30 TLQNIVATANMGCQLDLKAIAMQARNAEYNPKRFAAVIIRI---REPKTTALIFASGKMVCTGAKSEENARTAARKYARIVQKL----GFP---VTF---KDFKIQNIVASCDVKFPIRLEGLAYAHQ-MFSNYEPELFPGLIYRMRSPKIVLLIFVSGKVVLT 179
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BLAST of mRNA_Ecto-sp13_S_contig14213.3272.1 vs. uniprot
Match: A0A6G3MIS8_HENSL (TATA-box-binding protein (Trinotate prediction) n=1 Tax=Henneguya salminicola TaxID=69463 RepID=A0A6G3MIS8_HENSL)

HSP 1 Score: 166 bits (421), Expect = 3.480e-47
Identity = 86/174 (49.43%), Postives = 119/174 (68.39%), Query Frame = 3 
Query:  354 PFENHGQCKLSMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGGGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVLYT 875
            P E+    +  + N+ +T D+ C +DL+T+ + ARNAEYNP+RF+A +IR+    EP+ TALVF +GK+V+TGSR+      A + +ARI+ KL    G P+   NF      R+QN+VA+ DV FPIRLEG++  + G FC+YEPELFPGLIYRM  P++  LIFVSGKV+ T
Sbjct:   34 PAEDIYHVEPHIQNIVSTIDLSCKVDLRTIALHARNAEYNPRRFAAVVIRI---REPRTTALVFSSGKLVITGSRTEHEARLAARKYARIVQKL----GFPAIFSNF------RIQNIVASCDVNFPIRLEGILIEH-GQFCSYEPELFPGLIYRMVKPRVVLLIFVSGKVVLT 193
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BLAST of mRNA_Ecto-sp13_S_contig14213.3272.1 vs. uniprot
Match: A0A2G2YW92_CAPAN (TATA-box-binding protein n=4 Tax=Capsicum TaxID=4071 RepID=A0A2G2YW92_CAPAN)

HSP 1 Score: 165 bits (418), Expect = 3.740e-47
Identity = 82/164 (50.00%), Postives = 116/164 (70.73%), Query Frame = 3 
Query:  384 SMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGGGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVLYT 875
            ++ N+ +T ++ C +DLK + ++A+NAEYNPKRF A I+R+    EPK TAL+F TGKVVVTG+++     YA + +ARI+ K+     G    + F   +D ++QN+VA+ DVGFPIRLEGL  ++ G F +YEPE+FPGLIYRMK PKI  L+F SGK++ T
Sbjct:   12 TLQNIASTVNLDCKLDLKGIALQAQNAEYNPKRFPAVIMRV---KEPKTTALIFATGKVVVTGAKNEGDAKYAARKYARIVQKI-----GCHLGVKF---KDFKIQNIVASCDVGFPIRLEGLALAH-GAFSSYEPEIFPGLIYRMKQPKIVMLVFTSGKIVIT 163
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BLAST of mRNA_Ecto-sp13_S_contig14213.3272.1 vs. uniprot
Match: UPI001CB922F7 (TATA-box-binding protein-like isoform X1 n=2 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB922F7)

HSP 1 Score: 166 bits (419), Expect = 3.810e-47
Identity = 83/164 (50.61%), Postives = 116/164 (70.73%), Query Frame = 3 
Query:  384 SMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGGGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVLYT 875
            ++ N+ +T +++C +DLK++ ++ARNAEYNPKRF+A I+R+    EPK TAL+F +GK+V TG++S     +A + +ARI+ KL N              +D ++QN+VA+ DV FPIRLEGL  S+ G F +YEPELFPGLIYRMK PKI  LIFVSGK++ T
Sbjct:   25 TLQNIVSTVNLECKLDLKSIALQARNAEYNPKRFAAVIMRI---REPKTTALIFASGKMVCTGAKSEEQSRHAARKYARIIQKLGNAA----------KFKDFKIQNIVASCDVKFPIRLEGLAYSH-GAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLT 174
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BLAST of mRNA_Ecto-sp13_S_contig14213.3272.1 vs. uniprot
Match: A0A0L0HKX1_SPIPD (TATA-box-binding protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HKX1_SPIPD)

HSP 1 Score: 165 bits (418), Expect = 5.220e-47
Identity = 87/164 (53.05%), Postives = 113/164 (68.90%), Query Frame = 3 
Query:  384 SMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGGGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVLYT 875
            ++ N+ AT ++ C +DLKT+ + ARNAEYNPKRF+A I+R+    EPK TAL+F +GK+VVTG++S      A + +ARI+ KL     G   K       D ++QN+V + DV FPIRLEGL A N G FC+YEPELFPGLIYRM  PKI  LIFVSGK++ T
Sbjct:   27 TLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIMRI---REPKTTALIFASGKMVVTGAKSEEMSKLAARKYARIIQKL-----GFQAKFT-----DFKIQNIVGSCDVKFPIRLEGL-ALNHGSFCSYEPELFPGLIYRMLRPKIVLLIFVSGKIVLT 176
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BLAST of mRNA_Ecto-sp13_S_contig14213.3272.1 vs. uniprot
Match: A0A7R9TBJ0_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TBJ0_9VIRI)

HSP 1 Score: 167 bits (422), Expect = 8.490e-47
Identity = 91/186 (48.92%), Postives = 122/186 (65.59%), Query Frame = 3 
Query:  318 EAQTAMRAQVIGPFENHGQCKLSMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGGGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVLYT 875
            +A TA  A  +   ++       + N+ AT +M C +DL  + + ARNAEYNPKRFSA I+R+   +EPK TAL+F +GK+VVTG++S A    + K +ARI+ KL         K+NF   +D ++QN+V + DV FPIRLEG+  S+   F NYEPELFPGLIYRM+ PKI  LIFVSGKV+ T
Sbjct:   67 KAPTAAAAPAVDLTKHPSGIVPKLQNLVATVNMDCKLDLHKIALTARNAEYNPKRFSAVILRI---HEPKTTALIFHSGKMVVTGAKSEADARTSAKKYARIVQKL-------GFKVNF---KDFKIQNIVGSCDVKFPIRLEGISLSHSH-FSNYEPELFPGLIYRMRSPKIVLLIFVSGKVVLT 238
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BLAST of mRNA_Ecto-sp13_S_contig14213.3272.1 vs. uniprot
Match: A0A165ZVS9_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A165ZVS9_DAUCS)

HSP 1 Score: 164 bits (415), Expect = 9.330e-47
Identity = 79/173 (45.66%), Postives = 118/173 (68.21%), Query Frame = 3 
Query:  357 FENHGQCKLSMVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATALVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGGGGPSHKINFDLERDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVLYT 875
             ++H     ++ N+ +T ++ C +DLK + + ARNAEYNPKRF+A I+R+    EPK TAL+F +GK+V+TG++S      A + FAR++ K+        + + F   R+ ++QNMV + D+GFPIRLEG ++ +   F +YEPELFPGL+YRMKDPKI  L+FVSGK++ T
Sbjct:    1 MDHHSGLVPTIQNIVSTVNLDCRLDLKRIALSARNAEYNPKRFAAVIMRI---KEPKTTALIFSSGKLVITGAKSEDKARLAARKFARVVEKI-------GYPVRF---REFKIQNMVGSCDLGFPIRLEG-ISIHHAAFSSYEPELFPGLVYRMKDPKIVLLVFVSGKIVIT 159
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14213.3272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV81_ECTSI2.560e-17194.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2P6VMN0_9CHLO1.150e-4854.66TATA-box-binding 2 n=2 Tax=Chlorella clade TaxID=2... [more]
A0A1D2AC59_AUXPR1.440e-4855.28Uncharacterized protein n=3 Tax=Auxenochlorella pr... [more]
A0A1Y1HVM1_KLENI2.220e-4754.88TATA-box binding protein 1/2 n=1 Tax=Klebsormidium... [more]
A0A6G3MIS8_HENSL3.480e-4749.43TATA-box-binding protein (Trinotate prediction) n=... [more]
A0A2G2YW92_CAPAN3.740e-4750.00TATA-box-binding protein n=4 Tax=Capsicum TaxID=40... [more]
UPI001CB922F73.810e-4750.61TATA-box-binding protein-like isoform X1 n=2 Tax=E... [more]
A0A0L0HKX1_SPIPD5.220e-4753.05TATA-box-binding protein n=2 Tax=Spizellomyces Tax... [more]
A0A7R9TBJ0_9VIRI8.490e-4748.92Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A165ZVS9_DAUCS9.330e-4745.66Uncharacterized protein n=1 Tax=Daucus carota subs... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14213contigEcto-sp13_S_contig14213:663..4469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score415.2
Seed ortholog evalue1.8e-113
Seed eggNOG ortholog2880.D7FV81
Model size875
KEGG koko:K03120
KEGG Pathwayko03022,ko05016,ko05165,ko05166,ko05168,ko05169,ko05203,map03022,map05016,map05165,map05166,map05168,map05169,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0000126,GO:0000428,GO:0000976,GO:0000977,GO:0000979,GO:0000981,GO:0000983,GO:0000988,GO:0000989,GO:0000995,GO:0001012,GO:0001016,GO:0001046,GO:0001047,GO:0001067,GO:0001075,GO:0001085,GO:0001091,GO:0001092,GO:0001098,GO:0001099,GO:0001102,GO:0001134,GO:0001179,GO:0001186,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005672,GO:0006139,GO:0006259,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006359,GO:0006360,GO:0006366,GO:0006367,GO:0006383,GO:0006384,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0008301,GO:0009058,GO:0009059,GO:0009303,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0015074,GO:0016043,GO:0016070,GO:0016072,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019904,GO:0022607,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032196,GO:0032774,GO:0032991,GO:0033613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070893,GO:0070897,GO:0070898,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0090576,GO:0097159,GO:0097659,GO:0097718,GO:0098781,GO:0140110,GO:0140223,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:1990837,GO:2000112,GO:2001141
Exons4
EggNOG free text desc.DNA-templated transcription, initiation
EggNOG OGsCOG2101@1,KOG3302@2759
Cds size639
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462759.8503568-UTR-Ecto-sp13_S_contig14213:662..8731681462759.8503568-UTR-Ecto-sp13_S_contig14213:662..873Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14213 663..873 +
1681462759.8626127-UTR-Ecto-sp13_S_contig14213:2501..25261681462759.8626127-UTR-Ecto-sp13_S_contig14213:2501..2526Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14213 2502..2526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462759.8968801-CDS-Ecto-sp13_S_contig14213:2526..27841681462759.8968801-CDS-Ecto-sp13_S_contig14213:2526..2784Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14213 2527..2784 +
1681462759.9126275-CDS-Ecto-sp13_S_contig14213:3429..36111681462759.9126275-CDS-Ecto-sp13_S_contig14213:3429..3611Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14213 3430..3611 +
1681462759.9230468-CDS-Ecto-sp13_S_contig14213:4270..44691681462759.9230468-CDS-Ecto-sp13_S_contig14213:4270..4469Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14213 4271..4469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14213.3272.1prot_Ecto-sp13_S_contig14213.3272.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14213 2527..4469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14213.3272.1

>prot_Ecto-sp13_S_contig14213.3272.1 ID=prot_Ecto-sp13_S_contig14213.3272.1|Name=mRNA_Ecto-sp13_S_contig14213.3272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=213bp
MPRGGGGAGSSSGSKGPAPLGKQDACKEAQTAMRAQVIGPFENHGQCKLS
MVNVTATADMKCTIDLKTVVMRARNAEYNPKRFSACIIRLINKNEPKATA
LVFKTGKVVVTGSRSNASVDYACKTFARILSKLDNGGGGPSHKINFDLER
DRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKI
CFLIFVSGKVLYT
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mRNA from alignment at Ecto-sp13_S_contig14213:663..4469+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14213.3272.1 ID=mRNA_Ecto-sp13_S_contig14213.3272.1|Name=mRNA_Ecto-sp13_S_contig14213.3272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3807bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14213:663..4469+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCAGCAGTTTCATTTCGACGACACCTCCAGAACTTTCCTGGAAAACCGT
TGTTACCGACCGTGATTCTGCGGAGCGCTGGATTGAGGCATTCATTGTCG
CTCCTCGCTTGTCTTTCCCATCCCCACGGGCACCGTCAACCTTTACATAG
GGAACTGCTGTGGGCTGCTAAAGTTTGTGCTGAATCCGGAAGCTGGGGTG
TGTGTTCGCAGGTGCGACCTTCGTTGCGTCATTGTTCAACCTATTGCGAG
CGGCCAAGTGCAAAGCCCCTGGATAGCTGTTGCAACTCCGCTTGTGTGTT
GACAGGTCACAAAGGATCAGGGATCGCTGTCTCTCTACTCACAGTAACAG
TCTGAATTGTACATGGGTGAATGCAACCGCAGAAGCGCTTGATTCTTGCA
CTCGGTTGTGTGTAATTTTAAAAGCACCTAGCGCGTCATCTCCTTCGATC
ACAGCACGACCGTTAGGCTCACGTATAACCAGAAGGCCGTTTGTAGTGCT
ACAGCAGCAGTAGGGTAAGCTCTTCCTTTAGTTCCAATCAATAGACGCCA
CTTAATGCGCCTGCATCGCTGTTGTCTACCAGTGTGTCCTCCAAACCTAG
TCTCCTGTTGGCGTATTTCCTTTTTGGCTGGTGACAGCAAGAATACAGCA
GAATGCTCGATACTGACATGTCATGCGCCACTGCACTGCTGCAGATGGGC
CCCCCGCCACAACAACCACAGCAGACAGCAGGCCGGCTCTTTCTATTAGG
TACATCTGTACATGGTCGCGCGATTCAATCCTCCGTCGCACAACTATCGC
ATGTGTTGCCCTCCGGTTGATCGTGGACCTTTCCCTTCTCTCACGGTCAG
CGGCGATCAATTCCCCAAAGCACGTCGTAGAATAGAGAAATTCAAACGTT
CACTGCTGTCACACCCGGTAATGCTGTATGACACTCTACATGCGGCACAA
TTCAACCCTTGCGGCCGTTCCGAAAATCCCAGGTCCACACATACCTGTTA
GATTCTAGCTAACGTAGTTGAAGCTTTGGGGATTTCTAGGGACGGCAGTA
TGTGCCTGAATAGCAGTACAGTGCCCCCCTTTACACTGGTTGTTCTCATA
GATATTTGCACTCCCGTATGTACATGTACATGCGGATTTGTGTTTCATAG
TTCCAAAGTTTGAATGGCGGTGACAACACGATCATCCAAACTTTCCTGGC
TTCGCGGCTGGTGTGTAGACTTGGCATCGCAACCGGTCTTGTCTTACCCT
AGAAGGTCCTTGAAGGGTGGTAACAATCGTAGTCATGATGGTCGCACGGC
CCCTTGCACTTGACACCCTCCCTCCACATCCTCTGTGCACAACTGCTGTT
GCCATATTTGGGTCGAATTGGTCGCAATCGATGAAAGTTAATCTCTCGCT
CAGGGTTGACTTGCGGAGTTCCAGAAGCGGCATAGTCTAAGGCCCAGGAA
TCAACAAGTGGCGATTTGGCTGTAGATGAGGTGACTCGAAGAGTTCCTCC
CGTTGCAAGAAGAACGCATTCACGACTTGTGTTAGACCTGCTTCAATTTT
TGCAGCGAGGGAGGGAGCGCTGCTAATGGCAGGGAGGTGGGGGCGTACTC
TCATGTTTTGCATGCCTTAGCGGTTCGACCATTGACCACGCGTTCTCGAG
AGGACGGAGCATTGTTCCCTTAGGACCGATCAGCGATGGCAAATCGTTCC
TTACTGTGGAAGGGGTTGGTGCCCAAAATGGGGCGTGGCCGTCACAAGCA
GAGTAAGGGCGGAAAACGTGCAGTGTCATCACCACATGAGCACGCCTCCG
CTTTCGCCAACCTTTTTTACGCTTGTTGTACTACTGTAGGTGTGCGGCAC
AGGTGAAGGCACAGATGCCGAGGGGGGGCGGCGGGGCTGGCTCCAGCTCG
GGCTCGAAAGGGCCGGCGCCGTTGGGCAAACAAGATGCCTGCAAGGAAGC
GCAAACGGCCATGAGGGCGCAGGTCATCGGGCCCTTCGAGAACCATGGCC
AGTGCAAGCTAAGCATGGTCAACGTGACCGCCACCGCCGATATGAAGTGC
ACGATCGACCTTAAGACGGTCGTGATGAGGGCACGCAATGCCGAATACAA
CCCCAAGCGCTTCTCTGCCTGCGTAAGTAAAACCCGGCAGCTGCATGGAG
GTCTCTGCTTGGTTGGTTCGTTCCTTGCTCCCTGTCGTGGGTGGTTTGAT
TGATCTGTCATAGTCGCAACGTTTTCATCTCGCTATAGCAGTCGCAGCTG
TGGAGGCAGCAGTCCAGACGTGAACACACAGCAGTACCAGGGTTTGCTAT
TTATTGTATTTGACGGCTTGCAATACAAGCAATGTCTAGTGCCTTCGCAT
GCAAGCGGCCGACGACTACTGCTGGTATTTGTTATGTTCCCTGGACATGA
CCATTGTCTGAAGACCAATGCAGACCAATGTCTCAGCGCTGTTCTCGCTG
CTGTAGAGCACGAACACCGACGGCAATCCTAACCCTAACCCTAGGATGGA
AATCCACATGTTTCTTTTGTGTCGCTACTACTCGGCATTACACCAGTAGA
GAACCGGGGCAATGTTGTTGGCAACTGATCCTGCCCATCAGAGCAGCACA
TGCGGTACTGTCTGATTGGATCTGGACCCGCGAAGTATCGCATATCCTCC
GACCAGCGCGCATTCCCGCAAGCCTCCGAAAATAATTTCAACTGCGACTT
ATTCTGCCTCTGCTGGTTGTACGCTCTCTGCAACTTCGGCACTCTGTTTG
CGGCGTGGCATTCAAAGATCATCCGTCTGATTAATAAGAACGAGCCGAAG
GCGACGGCGTTGGTGTTCAAGACGGGCAAGGTAGTGGTGACGGGGTCGAG
GAGCAACGCTTCGGTCGACTACGCGTGCAAGACGTTCGCTCGGATCCTTA
GCAAACTCGACAACGGTGGCGGCGGGCCATCGCACAAGATTAACTTCGAG
TGAGTCGCTGGTAGAAAACCGGTACGTGTGTGCCTTGTCTACAAATGTGT
GCAACAACGTCGGACGAACCTATAGATGGAGAGTTCGAGCACCGCGCGAT
GACTTATTTTCCAGGTACGATGTTCATCTGCTGAAAGTTTCTGCGATTCC
TCGTTCCTGCGCCTAGGAGGACGCAACTACCAATATCGGAGTCTACCCGC
GCTGTTGCGTGTTGGAGATTATTTGCATCTCGTTTCTTCGTGGTGCGGGA
AGGCTCGGTGGCTCAGCCAAACCATTATCGCTCTTATCTGCCAGACGTGT
CTCTTCGGGATGCAACATGAGTTCCGAGTCTACAAGTCGTGGATAGAAAA
TCTCCATTCGTGCACCCGCTTGCCGCAGAGGCCTCGCGCTTATAGGACTT
GATTTCGCTCGGCTCACGTGCAAGTATCAATCAAGCACGTTACCCAATCG
ATCAACCCGTCGAGAAGTTACAATGATTGTGCATACCATTCACATGTTTA
ATATGCTGCCATAGAAACGATCGTGTCCTTTAAACAACCGGTGGTAAACG
CTTTAATTCCGACTCCTACCCTGTCCCCCTCGATTGGTGGGTGCACCTCA
ACCCGATTTTCCGAAATGTTGGCGCACTACACGCCTTTGACACGCCTTTG
CGCCAAAGCCTCGAGAGAGACCGGCGGGTCCAGAACATGGTGGCAACGAC
GGACGTTGGGTTTCCGATTCGCCTGGAAGGCTTGGTGGCCTCGAACCAAG
GATGCTTCTGCAACTACGAACCCGAGCTGTTTCCGGGGCTGATTTACCGT
ATGAAAGATCCCAAGATATGCTTCCTCATCTTCGTTTCGGGAAAGGTATT
GTACACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14213:663..4469+

>mRNA_Ecto-sp13_S_contig14213.3272.1 ID=mRNA_Ecto-sp13_S_contig14213.3272.1|Name=mRNA_Ecto-sp13_S_contig14213.3272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14213:663..4469+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGAGGGGGGGCGGCGGGGCTGGCTCCAGCTCGGGCTCGAAAGGGCC
GGCGCCGTTGGGCAAACAAGATGCCTGCAAGGAAGCGCAAACGGCCATGA
GGGCGCAGGTCATCGGGCCCTTCGAGAACCATGGCCAGTGCAAGCTAAGC
ATGGTCAACGTGACCGCCACCGCCGATATGAAGTGCACGATCGACCTTAA
GACGGTCGTGATGAGGGCACGCAATGCCGAATACAACCCCAAGCGCTTCT
CTGCCTGCATCATCCGTCTGATTAATAAGAACGAGCCGAAGGCGACGGCG
TTGGTGTTCAAGACGGGCAAGGTAGTGGTGACGGGGTCGAGGAGCAACGC
TTCGGTCGACTACGCGTGCAAGACGTTCGCTCGGATCCTTAGCAAACTCG
ACAACGGTGGCGGCGGGCCATCGCACAAGATTAACTTCGACCTCGAGAGA
GACCGGCGGGTCCAGAACATGGTGGCAACGACGGACGTTGGGTTTCCGAT
TCGCCTGGAAGGCTTGGTGGCCTCGAACCAAGGATGCTTCTGCAACTACG
AACCCGAGCTGTTTCCGGGGCTGATTTACCGTATGAAAGATCCCAAGATA
TGCTTCCTCATCTTCGTTTCGGGAAAGGTATTGTACACA
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