mRNA_Ecto-sp13_S_contig14208.3267.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14208.3267.1
Unique NamemRNA_Ecto-sp13_S_contig14208.3267.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14208.3267.1 vs. uniprot
Match: A0A6H5JJV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV9_9PHAE)

HSP 1 Score: 302 bits (773), Expect = 4.630e-91
Identity = 165/196 (84.18%), Postives = 171/196 (87.24%), Query Frame = 1 
Query:  376 EEALLPLGVASVLWELECCAAQALVTLMSLNEGRPNHFGVFRAGVYVQEMRMLEAKILELVQQADNPREEKNAGLETTTVAAGIRNCVARLWWSRHAGENAETMAWEAFVEAFQSDFGAQLPKTLDVLRKHIAVQGDDYRPAPVPSTALPPTXXXXXSLRHHRPTTTATTS-PWGRRARESAPARSPQNGDSPATT 960
            EEALLPLGVASVLWELECCAAQ LVTLMSLNEGRPNHFGVFRAGVYVQEMRMLEAK       ADNPREEKNAGLETTTVAAGIRNCVARLWW+RHAGENAET+ WEAF EAFQSDFGAQLP+T++VLRKHIAVQGDDYRPAPVPST LPPTXXXXX LR+ RPT       P  RR RES PARSPQNGD PATT
Sbjct:  171 EEALLPLGVASVLWELECCAAQVLVTLMSLNEGRPNHFGVFRAGVYVQEMRMLEAK-------ADNPREEKNAGLETTTVAAGIRNCVARLWWTRHAGENAETLTWEAFEEAFQSDFGAQLPETMEVLRKHIAVQGDDYRPAPVPSTTLPPTXXXXX-LRNGRPTXXXXXXXPRERRTRESTPARSPQNGDLPATT 358
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BLAST of mRNA_Ecto-sp13_S_contig14208.3267.1 vs. uniprot
Match: D7G5L0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L0_ECTSI)

HSP 1 Score: 251 bits (641), Expect = 1.160e-74
Identity = 138/162 (85.19%), Postives = 139/162 (85.80%), Query Frame = 1 
Query:  457 MSLNEGRPNHFGVFRAGVYVQEMRMLEAKILELVQQADNPREEKNAGLETTTVAAGIRNCVARLWWSRHAGENAETMAWEAFVEAFQSDFGAQLPKTLDVLRKHIAVQGDDYRPAPVPSTALPPTXXXXXSLRHHRPTTTATTSPWGRRARESAPARSPQNG 942
            MSLNEGRPNHFGVFRAGVYVQEMRMLEAKILELVQQADNPREEKNAGLETTTVAAGIRNCVARLWWSRHAGEN ETM WEAF EAFQ+DFGAQLPKTLDVLRKHIAVQGDDYR APVPSTALP  XXXXX             SP GRRA ES PARS QNG
Sbjct:    1 MSLNEGRPNHFGVFRAGVYVQEMRMLEAKILELVQQADNPREEKNAGLETTTVAAGIRNCVARLWWSRHAGENGETMTWEAFEEAFQTDFGAQLPKTLDVLRKHIAVQGDDYRAAPVPSTALPXXXXXXXXXXXXXXXXXX--SPRGRRAGESTPARSQQNG 160
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14208.3267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJV9_9PHAE4.630e-9184.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5L0_ECTSI1.160e-7485.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14208contigEcto-sp13_S_contig14208:598..4138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score253.4
Seed ortholog evalue1.4e-64
Seed eggNOG ortholog2880.D7G5L0
Model size964
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
Ec32 ortholog descriptionRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
Ec32 orthologEc-00_008910.2
Cds size963
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462759.3757699-CDS-Ecto-sp13_S_contig14208:597..11401681462759.3757699-CDS-Ecto-sp13_S_contig14208:597..1140Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14208 598..1140 +
1681462759.386637-CDS-Ecto-sp13_S_contig14208:1796..18821681462759.386637-CDS-Ecto-sp13_S_contig14208:1796..1882Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14208 1797..1882 +
1681462759.3973997-CDS-Ecto-sp13_S_contig14208:2815..29091681462759.3973997-CDS-Ecto-sp13_S_contig14208:2815..2909Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14208 2816..2909 +
1681462759.4072905-CDS-Ecto-sp13_S_contig14208:3897..41371681462759.4072905-CDS-Ecto-sp13_S_contig14208:3897..4137Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14208 3898..4137 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14208.3267.1prot_Ecto-sp13_S_contig14208.3267.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14208 598..4137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14208.3267.1

>prot_Ecto-sp13_S_contig14208.3267.1 ID=prot_Ecto-sp13_S_contig14208.3267.1|Name=mRNA_Ecto-sp13_S_contig14208.3267.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=321bp
QVVKLGLQTCLLEPEDRGGPSGGGSSGSSGKAGGGNGLLVASIGGGGARC
RSSSPTVSSTGCTAPQSSKRSTATSTAGVTTPSVGGGGSGGGGGAIIVGK
PRASSSSNSSVFLESGAGGGAGAGGEEALLPLGVASVLWELECCAAQALV
TLMSLNEGRPNHFGVFRAGVYVQEMRMLEAKILELVQQADNPREEKNAGL
ETTTVAAGIRNCVARLWWSRHAGENAETMAWEAFVEAFQSDFGAQLPKTL
DVLRKHIAVQGDDYRPAPVPSTALPPTPPTPPSLRHHRPTTTATTSPWGR
RARESAPARSPQNGDSPATTD
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mRNA from alignment at Ecto-sp13_S_contig14208:598..4138+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14208.3267.1 ID=mRNA_Ecto-sp13_S_contig14208.3267.1|Name=mRNA_Ecto-sp13_S_contig14208.3267.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3541bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14208:598..4138+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTAGTGAAGCTAGGTTTGCAGACGTGCCTGCTGGAGCCGGAAGACAG
AGGAGGCCCGAGCGGCGGCGGAAGCAGCGGCAGCAGCGGCAAGGCCGGCG
GCGGCAACGGCCTCCTGGTTGCCAGCATCGGTGGCGGCGGGGCGCGCTGC
CGCTCTTCTTCTCCCACGGTCTCGAGCACAGGTTGCACCGCACCCCAGAG
CTCCAAACGCTCGACGGCAACATCGACCGCAGGGGTAACGACACCCTCCG
TTGGCGGCGGCGGCAGCGGCGGCGGCGGCGGTGCGATCATCGTCGGAAAG
CCACGAGCCAGCAGCAGCAGCAATAGCAGCGTGTTTTTGGAGAGCGGGGC
TGGAGGAGGAGCGGGCGCGGGGGGGGAAGAGGCCCTACTGCCCCTTGGCG
TAGCCTCGGTGTTGTGGGAGCTGGAGTGCTGCGCGGCGCAGGCTCTGGTG
ACCTTGATGAGCCTCAACGAGGGTCGGCCGAACCACTTCGGCGTGTTTCG
AGCGGGCGTGTACGTGCAGGAGATGCGCATGCTCGAGGCCAAGGTATTCG
GTCTCTCTCCCAATGCTAATGTTGTAACGGGGTAACGGGGTGTGGATGGG
GCGCCACGGGGGTTTGCTGTGGTTGTTGCTGCTGTTGTTGTTTTCGTGTG
CGCCATCGTTCTTTTTGTTGGCGTTGGCATTGGTGAAGGCCAAAGATCAT
GCCCTGCAACCTGCCCATAGCTAAAAAGGGAACGAATAGGGAATTTTTTC
GTGACGTGGTCGGAGGGTGGGCACTTCGCGTGCAAGTACGTCAGCGCACC
CAAAAATTATCGGTTGTTGGAACTGCTGTGGTGGGCCGTGTGGAGAGTAG
AACCGGAGTCGTTTGCTCAGCCCGACGAGCCCATGCACACGCGCACCGTA
GTGGAAAGGGCGATCAGTCGTCAAAATGGAGTTGAGGCCAGTACTCGAGC
GAGACGCCGCCCCCCGCCCCCCCGCCCCCCCCCGCGCGCCCCTCTCGTCC
ACCGCGACCCGTCCTCCTCATATATCGTTCCGCCACAACACGCGCGCGTT
CTTTTCCTCTGGGTCTGGCTGCCTACCTTCCTGAACCGCACCGAGCAACT
GACCTACTTGACTGCCTGGCTTTGCTTGGTTTTTTCCTTTCCATCGGCGT
GGTGCGTTTTGCTGTTTGTTGCTTGCTTGCTTGTTGGCGTTGTGCTCAGA
TATTGGAGCTGGTGCAGCAGGCGGACAATCCCCGCGAGGAGAAGAACGCC
GGGCTGGAGACCACCACGGTCGCCGCCGGCATACGGTGCGTGCGTGCGTG
AGTTGTGTGTGTGTGCGTACGTGCGTGCTCTGCCTGAAAGGGGCAGGATA
GTAAAAGTAGATAGTAGAAAAGCCTTCTGACAGTCAAGAAGAAAGAGAGG
GAGCGAGAAAGAGAGCGACGGGCAAAACCGGCGGACAGAAGGAAAGATGA
GAGAGAAATTAGCGTTGCTTTGATTGTTGTTCTCTGTCTGACGTGTTATT
ATGTAGTTCGGAGAGGAACAAATTCTAAGACTGAGGCTACGCTTACCCGA
GGTGGTACCGTGCTGTTCGGCTGAACTTTTCACTTGGGGGGGTATGTAGA
TATGGCGTACAAGCTAGAACCATCCTCGCTCTGGTGGTTATAGCTGGAGG
CGGAGATGCTAGCTAGCTTGTGGGAGAGGATGGCCCACTACTCCCACCGA
TGTTACGTCCACCTTCAGTTCGGTTCCGTTCAAATAGTCTTCGTTTGTTT
GTAGACGGGAACCAATTCAACCCTAGTTTGTTGTACTAGATCTTTGTTGT
TATTTGACTACAGGCAGAGCGCTTAAGTTGTGCGTCACGGCTACCGCCCT
GTCTCGCGTCCTAGCCTTGTTGCTTCGACTGTTCTCTGCCCCCCCGCCGT
CTCATCCCCCCGCAAACGTTCCCTGCCGAGGAACGAGCGCACCCCCCCTT
GCCCCTGTCAGCCCTCTTTACGTACAAGATGACCTCGAGGCATTGTCGCA
GTCAACAGTCGCGCCCGTGTTTGGGTCCCTTCTTGTTGCTTTGCCGCTGC
TGCTGCCTTTGTGGTCTGGCCTTCTGCTCGTCTCCGACCACTCCTCGTTG
CGTCTTTTGTTGCTGGTTTCTGGGTGGCGGCTGCTTGGACCATATCTGGA
CCGTCCATCCGTCTGGCTGTGCTCGTGGTCGGCGGCGGCGGGGGCGTTTT
CATCGACGGCATGAGCAGGAACTGTGTGGCGAGGCTTTGGTGGTCCCGGC
ACGCCGGCGAGAACGCTGAAACTATGGCCTGGGAGGCGTTCGTGGAGGCG
TTTCAGTCAGACGTGAGCTACGGTTGCAAGGGAGCGTTGTGTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTATTGTTGTTATTGCTC
TTGTGTTGCTGACACTCAAGACTGTTTCTGATCTCTGGCTTGTTGTTTTC
TTGAACTTGATAAACCGTTTCAGACTTTTGCACCACCCGTAGACTACCTC
CTCCTCCTCCTCCTCCTCGTCTGCGTTCTTCAAGACAGTGACAGCGATCT
CGGTCGCGGTACAGCAGTAGGCCCTAAACATGATAATAAGAGTACAGGGA
GAAGCAAGAAGGCCCTAGAGAAACCCCAAGGTTTGTAAAGAAACGAAGTT
CTCAGGATGGCAAGCCCAGAAAATATGCAGTACTGTAGCAAGTGCAGACA
TGGGTAGTGCTACCTGTTCTTCCTTTCCTGGATGTCCGGTTGGTGCAGCA
TGAAACGTACCAAGTATCGTTGCATCCTCCAAAATTTCGCGTGTCAATGT
TGTAGTCATCCTTGCCCCCCCTCCACCTTGGGCCAGGTAGCCCGCGGCAT
CGCGAGTTCCTTTTGGGGATTAGAGAAGTTGTGACGGGGCTGGGACGGGA
TGTTTTCACTTGTGCGGGTCGGAACCGCTCGGATCTTTGGGACGATGTTG
AAATGGACACAGCTCCTCTCCCCCCTGTCAGACACACGACAAAAGAGCGG
AGACTAAGGCGTTGGAGTGGAGCGTGGGTAAAGAGGACGTGTGCTGTGTC
TTGCCAGGGTGCTTCGAAAGTGTTGGGTTCGTCGTCGCTCAGGGTAGACA
GCGGGTGTGCAACGATATTTCGGCCAGGATTTTTTTTCGTGTTGTTTTTC
TCTCCACTGCTCTCCCTTGTCGTGGTTCAACTCTGCTTCGGCCTCCTTCC
TCAAGAAAACGTACACGCGCACACAACTATCCTACATGTCGCGCTCGGGT
AACGCACAACCGTTCGAATGAACTCGTTGTAACGTGACGAAACAAATCAG
TTCGGCGCCCAGCTTCCGAAAACCCTGGACGTCCTCCGGAAGCACATCGC
CGTCCAAGGCGACGACTACCGCCCCGCCCCCGTGCCATCCACCGCCCTAC
CGCCGACGCCGCCGACGCCGCCGTCGCTCCGCCACCACCGGCCAACCACC
ACCGCCACCACCTCCCCGTGGGGGCGACGCGCCAGAGAATCAGCGCCTGC
ACGATCGCCGCAGAACGGCGACTCGCCGGCCACCACCGATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14208:598..4138+

>mRNA_Ecto-sp13_S_contig14208.3267.1 ID=mRNA_Ecto-sp13_S_contig14208.3267.1|Name=mRNA_Ecto-sp13_S_contig14208.3267.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=963bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14208:598..4138+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTAGTGAAGCTAGGTTTGCAGACGTGCCTGCTGGAGCCGGAAGACAG
AGGAGGCCCGAGCGGCGGCGGAAGCAGCGGCAGCAGCGGCAAGGCCGGCG
GCGGCAACGGCCTCCTGGTTGCCAGCATCGGTGGCGGCGGGGCGCGCTGC
CGCTCTTCTTCTCCCACGGTCTCGAGCACAGGTTGCACCGCACCCCAGAG
CTCCAAACGCTCGACGGCAACATCGACCGCAGGGGTAACGACACCCTCCG
TTGGCGGCGGCGGCAGCGGCGGCGGCGGCGGTGCGATCATCGTCGGAAAG
CCACGAGCCAGCAGCAGCAGCAATAGCAGCGTGTTTTTGGAGAGCGGGGC
TGGAGGAGGAGCGGGCGCGGGGGGGGAAGAGGCCCTACTGCCCCTTGGCG
TAGCCTCGGTGTTGTGGGAGCTGGAGTGCTGCGCGGCGCAGGCTCTGGTG
ACCTTGATGAGCCTCAACGAGGGTCGGCCGAACCACTTCGGCGTGTTTCG
AGCGGGCGTGTACGTGCAGGAGATGCGCATGCTCGAGGCCAAGATATTGG
AGCTGGTGCAGCAGGCGGACAATCCCCGCGAGGAGAAGAACGCCGGGCTG
GAGACCACCACGGTCGCCGCCGGCATACGGAACTGTGTGGCGAGGCTTTG
GTGGTCCCGGCACGCCGGCGAGAACGCTGAAACTATGGCCTGGGAGGCGT
TCGTGGAGGCGTTTCAGTCAGACTTCGGCGCCCAGCTTCCGAAAACCCTG
GACGTCCTCCGGAAGCACATCGCCGTCCAAGGCGACGACTACCGCCCCGC
CCCCGTGCCATCCACCGCCCTACCGCCGACGCCGCCGACGCCGCCGTCGC
TCCGCCACCACCGGCCAACCACCACCGCCACCACCTCCCCGTGGGGGCGA
CGCGCCAGAGAATCAGCGCCTGCACGATCGCCGCAGAACGGCGACTCGCC
GGCCACCACCGAT
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