mRNA_Ecto-sp13_S_contig14203.3266.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14203.3266.1
Unique NamemRNA_Ecto-sp13_S_contig14203.3266.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14203.3266.1 vs. uniprot
Match: A0A6H5KR85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR85_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 8.730e-35
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = 1 
Query:    1 GRRDGEVAGEGEGPPDVASEVSRGDHGEEGEREQASRGGWPGGNLQGHGRVDGNTTPACIQGTLLSLLDQHTYDVVL 231
            GR DGEVAGEGEGPPDVASEV RGDHGE+GEREQASRGGWPGG+LQGHGRVDGNTTPACIQGTLLSLLD+H+  ++L
Sbjct:  635 GRHDGEVAGEGEGPPDVASEVGRGDHGEKGEREQASRGGWPGGHLQGHGRVDGNTTPACIQGTLLSLLDRHSLRMML 711
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BLAST of mRNA_Ecto-sp13_S_contig14203.3266.1 vs. uniprot
Match: D8LEQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEQ5_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 8.390e-19
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 2 
Query:    2 DGATGRWRARVKALQTSLRKSAAETMARRARGSKHPGEAGPVETFRGM 145
            DGA GRWRARVKALQTSL KSAAETMARRARGSKHPGEAGPV+TFRGM
Sbjct:  636 DGAAGRWRARVKALQTSLGKSAAETMARRARGSKHPGEAGPVDTFRGM 683
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14203.3266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KR85_9PHAE8.730e-3587.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEQ5_ECTSI8.390e-1993.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14203contigEcto-sp13_S_contig14203:801..1521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size235
Hectar predicted targeting categoryother localisation
Exons2
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462759.3338084-CDS-Ecto-sp13_S_contig14203:800..9451681462759.3338084-CDS-Ecto-sp13_S_contig14203:800..945Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14203 801..945 +
1681462759.345838-CDS-Ecto-sp13_S_contig14203:1433..15191681462759.345838-CDS-Ecto-sp13_S_contig14203:1433..1519Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14203 1434..1519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14203.3266.1prot_Ecto-sp13_S_contig14203.3266.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14203 801..1519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14203.3266.1

>prot_Ecto-sp13_S_contig14203.3266.1 ID=prot_Ecto-sp13_S_contig14203.3266.1|Name=mRNA_Ecto-sp13_S_contig14203.3266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
GRRDGEVAGEGEGPPDVASEVSRGDHGEEGEREQASRGGWPGGNLQGHGR
VDGNTTPACIQGTLLSLLDQHTYDVVL
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mRNA from alignment at Ecto-sp13_S_contig14203:801..1521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14203.3266.1 ID=mRNA_Ecto-sp13_S_contig14203.3266.1|Name=mRNA_Ecto-sp13_S_contig14203.3266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=721bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14203:801..1521+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGACGGCGCGACGGGGAGGTGGCGGGCGAGGGTGAAGGCCCTCCAGACGT
CGCTTCGGAAGTCAGCCGCGGAGACCATGGCGAGGAGGGCGAGAGGGAGC
AAGCATCCCGGGGAGGCTGGCCCGGTGGAAACCTTCAGGGGCATGGTGAG
ATATATACCTCCCGCCACATTTCTGTGTCTTGTTGTTGTCTTTCCGGCGT
GTGATGATGTGGTTCACGTTGTTGGTACGTATTTGGTATTTAGTAGTGAG
GCTTGGCATGATCGGCATGATGATTGGTTTCAGTGCGGCGTACTTCCCTT
GGAATTCGAGTTCGCACATTTAGGACCCCCCCCCCCCCCCCGACCATTGG
ACGGTCCCCGCATTGAAAAACGCACTGTGCCTGGGCCGAGATTTGCCTTG
TTGGAAACAAGTGATCACCAGCGGACCTACCATCCTTGTGTGCTGCTAGA
CTACTTTCATCATCACGAGCCTTCTTGTACCCCAATCAGCTCCTCCCCAT
ACTCCCCTGTAGCCACGCGCGCGGTTCTTCTCCGATACCAGGCGTGCAGC
AGCAGTCGTCAACGTTAACATTCGCTCTTCTTGCCGCGGTGTGCGCACCT
CTCACCCCCCCTTCCCTCTCCCGGCTCTGGCAGGACGAGTCGACGGCAAC
ACAACGCCTGCGTGCATTCAAGGAACCCTCCTAAGTCTCCTCGACCAACA
TACGTATGATGTTGTCTTAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14203:801..1521+

>mRNA_Ecto-sp13_S_contig14203.3266.1 ID=mRNA_Ecto-sp13_S_contig14203.3266.1|Name=mRNA_Ecto-sp13_S_contig14203.3266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14203:801..1521+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGACGGCGCGACGGGGAGGTGGCGGGCGAGGGTGAAGGCCCTCCAGACGT
CGCTTCGGAAGTCAGCCGCGGAGACCATGGCGAGGAGGGCGAGAGGGAGC
AAGCATCCCGGGGAGGCTGGCCCGGTGGAAACCTTCAGGGGCATGGACGA
GTCGACGGCAACACAACGCCTGCGTGCATTCAAGGAACCCTCCTAAGTCT
CCTCGACCAACATACGTATGATGTTGTCTTA
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