mRNA_Ecto-sp13_S_contig14202.3265.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14202.3265.1
Unique NamemRNA_Ecto-sp13_S_contig14202.3265.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14202.3265.1 vs. uniprot
Match: D8LN51_ECTSI (Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN51_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 5.160e-37
Identity = 88/110 (80.00%), Postives = 89/110 (80.91%), Query Frame = 1 
Query:   70 SGMTISPRLQAKEIARREQAEHQTNWSQSGRREKRTAKSPXXXXXXAAAKRPRTSTPKARPPAPSKAGSIRHARPAKQRGGETPLEGTKKVGSKKRAPNRPPGSAKTNSS 399
            S MTISPRLQAKEIARREQAEHQ N SQSG    RTA+SP      AAAKRPRTSTPKARPPAPSKAGSIRHARPAKQ GGETP EG KKVG  K A  RPPGSAKTNSS
Sbjct:    2 SSMTISPRLQAKEIARREQAEHQKNRSQSGXXXXRTAQSPPPAEEEAAAKRPRTSTPKARPPAPSKAGSIRHARPAKQLGGETPPEGKKKVGPMKGAAIRPPGSAKTNSS 111
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BLAST of mRNA_Ecto-sp13_S_contig14202.3265.1 vs. uniprot
Match: A0A6H5JWD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWD3_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 3.890e-21
Identity = 68/91 (74.73%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:  124 QAEHQTNWSQSGRREKRTAKSPXXXXXXAAAKRPRTSTPKARPPAPSKAGSIRHARPAKQRGGETPLEGTKKVGSKKRAPNRPPGSAKTNS 396
            QAEHQ N SQS           XXXXXX  AKRPRTSTPKARPPAPSKAGSIRHARPAKQ GGETP  G KKVGSKK A NR PGSAKT+S
Sbjct:   24 QAEHQKNRSQSXXXXXXXXXXXXXXXXXXXAKRPRTSTPKARPPAPSKAGSIRHARPAKQLGGETPQAGNKKVGSKKGAANRTPGSAKTDS 114
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14202.3265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN51_ECTSI5.160e-3780.00Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5JWD3_9PHAE3.890e-2174.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14202contigEcto-sp13_S_contig14202:245..1313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score145.6
Seed ortholog evalue1.7e-32
Seed eggNOG ortholog2880.D8LN51
Model size415
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K06101,ko:K07117,ko:K11423,ko:K11424,ko:K11728
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko05202,map00310,map05202
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000803,GO:0000805,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0007530,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009892,GO:0009987,GO:0010452,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016278,GO:0016279,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0018992,GO:0019222,GO:0019538,GO:0022414,GO:0030849,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0034968,GO:0036211,GO:0040029,GO:0042054,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046975,GO:0048519,GO:0048856,GO:0050789,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0140096,GO:1901564
Exons2
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1081@2759,KOG1632@1,KOG1632@2759
EC2.1.1.43
Cds size414
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462759.299825-CDS-Ecto-sp13_S_contig14202:244..5321681462759.299825-CDS-Ecto-sp13_S_contig14202:244..532Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14202 245..532 -
1681462759.3097148-CDS-Ecto-sp13_S_contig14202:1187..13131681462759.3097148-CDS-Ecto-sp13_S_contig14202:1187..1313Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14202 1188..1313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14202.3265.1prot_Ecto-sp13_S_contig14202.3265.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14202 245..1313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14202.3265.1

>prot_Ecto-sp13_S_contig14202.3265.1 ID=prot_Ecto-sp13_S_contig14202.3265.1|Name=mRNA_Ecto-sp13_S_contig14202.3265.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=138bp
VGVGGQAYRCARVCILGHTIANASGMTISPRLQAKEIARREQAEHQTNWS
QSGRREKRTAKSPPPAEEEAAAKRPRTSTPKARPPAPSKAGSIRHARPAK
QRGGETPLEGTKKVGSKKRAPNRPPGSAKTNSSSRARR
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mRNA from alignment at Ecto-sp13_S_contig14202:245..1313-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14202.3265.1 ID=mRNA_Ecto-sp13_S_contig14202.3265.1|Name=mRNA_Ecto-sp13_S_contig14202.3265.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1069bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14202:245..1313- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGGCGTTGGAGGACAAGCGTACAGGTGTGCACGTGTGTGTATCCTTGG
TCACACGATCGCCAACGCGTCCGGGATGACAATCTCACCACGTCTCCAGG
CGAAAGAGATCGCCAGACGAGAGCAGGTGGGGTGTGTTCCTCTGTCTCCT
GTTTATGTAGCGCATTAATTTCATGCCGAGCACACACAAACTAACGGCTC
TTTGTGAACACTGGGCTGATGGGTAGCATGCAAGAGCTGTGTGGGCTACA
ACGAAAGGTACAGAGAGGGTCTTGGTAGAGTCAGTGTTCGTGTGATGGAG
AGCGCCCTGTTGGGACCAGTTTGGTTGAGAACCGTACGGTCGGCGTGCCG
ATGACGTGAGAACGCGACCCATAGTCCGTTATGTAGTGGCACACGACAGC
AGCCTGAAGGGCGGAGTTTTCCAAGCTCCCTGTCGCACAGCCCTGTCTGT
CGTGGGTGTCAAGCACCTACACCGCCATGCTACCCGCTGTCTTCTTCCCT
CACCTCCTAGTAGAATCTGGTGCTGCAGATGAACTACTGCGGCATTGATG
GGTGAACGGCACAGAATCCTGTATTTTGTATTTTATACCTCCTGCTCCAG
TGCAGTGCAGACCCCTCCCCCGGAAGTCGCGCTAATACTGCTGTAAGCAA
CTTTTTCCCGCACCAGACCAGCGCCACTGCTCTAGCAGGCCATTGGGGGC
TCTGATGAATGCCAGACAATCTCACATCCGTTGAGAGACTTTCTTGGCCG
TCGCCAACGTCGTCGCGCACCCACCAAACAGGCAGAGCACCAGACGAACT
GGAGTCAGTCCGGCCGCAGAGAGAAGCGTACGGCCAAGTCGCCGCCACCG
GCGGAGGAGGAGGCCGCCGCCAAGCGGCCGAGGACAAGCACACCCAAGGC
AAGGCCTCCGGCTCCCAGTAAGGCGGGATCTATTCGTCATGCCAGGCCCG
CGAAGCAACGCGGTGGGGAAACGCCTCTGGAGGGAACTAAAAAAGTCGGC
TCTAAGAAGAGGGCGCCCAATAGACCCCCCGGCAGCGCGAAGACGAACAG
CAGCAGCAGGGCGAGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14202:245..1313-

>mRNA_Ecto-sp13_S_contig14202.3265.1 ID=mRNA_Ecto-sp13_S_contig14202.3265.1|Name=mRNA_Ecto-sp13_S_contig14202.3265.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14202:245..1313- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGGCGTTGGAGGACAAGCGTACAGGTGTGCACGTGTGTGTATCCTTGG
TCACACGATCGCCAACGCGTCCGGGATGACAATCTCACCACGTCTCCAGG
CGAAAGAGATCGCCAGACGAGAGCAGGCAGAGCACCAGACGAACTGGAGT
CAGTCCGGCCGCAGAGAGAAGCGTACGGCCAAGTCGCCGCCACCGGCGGA
GGAGGAGGCCGCCGCCAAGCGGCCGAGGACAAGCACACCCAAGGCAAGGC
CTCCGGCTCCCAGTAAGGCGGGATCTATTCGTCATGCCAGGCCCGCGAAG
CAACGCGGTGGGGAAACGCCTCTGGAGGGAACTAAAAAAGTCGGCTCTAA
GAAGAGGGCGCCCAATAGACCCCCCGGCAGCGCGAAGACGAACAGCAGCA
GCAGGGCGAGGAGG
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