prot_Ecto-sp13_S_contig1420.3262.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1420.3262.1
Unique Nameprot_Ecto-sp13_S_contig1420.3262.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length182
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1420.3262.1 vs. uniprot
Match: A0A6H5L7H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7H8_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 2.390e-61
Identity = 169/177 (95.48%), Postives = 171/177 (96.61%), Query Frame = 0 
Query:    6 AACKHLSRNDAPGKGRAEEPSHDMSNLSYHQPKVELKPTRLLARTIYAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDGITFVMPGPDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGHLHGETELDSEIT 182
            AA +  S NDA G+GRAE PSHDMSNLSYHQPKVELKPTRLLARTIYAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDGITFVMPGPDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGHLHGETELDSEIT
Sbjct:   28 AAQQQRSGNDALGQGRAENPSHDMSNLSYHQPKVELKPTRLLARTIYAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDGITFVMPGPDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGHLHGETELDSEIT 204
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BLAST of mRNA_Ecto-sp13_S_contig1420.3262.1 vs. uniprot
Match: D8LF88_ECTSI (WD repeat-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF88_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 1.240e-56
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0 
Query:   29 MSNLSYHQPKVELKPTRLLARTIYAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDGITFVMPGPDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGHLHGETELDSEIT 182
            MSNLSYHQPKVELKPTRLLARTIYAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDGITFVMPGPDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGHLHGETELDSEIT
Sbjct:    1 MSNLSYHQPKVELKPTRLLARTIYAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDGITFVMPGPDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGHLHGETELDSEIT 154
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BLAST of mRNA_Ecto-sp13_S_contig1420.3262.1 vs. uniprot
Match: UPI001B88401B (WD40-repeat-containing domain protein n=1 Tax=Suillus bovinus TaxID=48563 RepID=UPI001B88401B)

HSP 1 Score: 55.8 bits (133), Expect = 7.510e-6
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 0 
Query:   41 LKPTRLLARTIYAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDGITFVMPGPDGR 111
            L P+ +  RT   H + V +VA F  +  R++TGS D T +LWDLKTG  L+K +GH+ G+  +    DG+
Sbjct:   90 LIPSTIPPRTFEDHEATVQAVAVFPDK-RRMVTGSEDNTLRLWDLKTGAVLKKMKGHSGGVWALTVSRDGQ 159
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BLAST of mRNA_Ecto-sp13_S_contig1420.3262.1 vs. uniprot
Match: A0A643C2B2_BALPH (Uncharacterized protein (Fragment) n=1 Tax=Balaenoptera physalus TaxID=9770 RepID=A0A643C2B2_BALPH)

HSP 1 Score: 52.0 bits (123), Expect = 5.380e-5
Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = 0 
Query:   50 TIYAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDGI 101
            T    + Y +    F  Q +RLLTGS D+TA++WD++TG  LQ  +GHTD I
Sbjct:   66 TALCKNKYQAEKISFNPQGNRLLTGSSDKTARIWDVQTGQCLQVLEGHTDEI 117
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BLAST of mRNA_Ecto-sp13_S_contig1420.3262.1 vs. uniprot
Match: A0A1Z4NIE4_9CYAN (WD repeat protein with Ser/Thr protein kinase motif n=1 Tax=Calothrix sp. NIES-3974 TaxID=2005462 RepID=A0A1Z4NIE4_9CYAN)

HSP 1 Score: 52.8 bits (125), Expect = 6.960e-5
Identity = 26/84 (30.95%), Postives = 43/84 (51.19%), Query Frame = 0 
Query:   36 QPKVELKPTRLLARTI--------YAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDGITFVMPGPDGR 111
            +P +  K  +  A T+        +  H +  S   F    ++L++GS+DET ++WDLK G  LQ   GH DG+  V+   +G+
Sbjct:   30 KPPISAKSQQTTALTVNKNPLQYTFKRHIWDVSTLVFSPDANKLISGSFDETIQIWDLKQGKLLQSLPGHKDGVNAVVISRNGK 113
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1420.3262.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L7H8_9PHAE2.390e-6195.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF88_ECTSI1.240e-56100.00WD repeat-containing protein (Partial) (Fragment) ... [more]
UPI001B88401B7.510e-640.85WD40-repeat-containing domain protein n=1 Tax=Suil... [more]
A0A643C2B2_BALPH5.380e-546.15Uncharacterized protein (Fragment) n=1 Tax=Balaeno... [more]
A0A1Z4NIE4_9CYAN6.960e-530.95WD repeat protein with Ser/Thr protein kinase moti... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 112..126
score: 36.55
coord: 153..167
score: 29.54
coord: 71..85
score: 40.31
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 44..84
e-value: 1.0E-5
score: 35.0
coord: 87..125
e-value: 2.2E-6
score: 37.2
coord: 128..166
e-value: 5.0E-7
score: 39.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 91..125
e-value: 3.2E-5
score: 24.6
coord: 50..84
e-value: 0.012
score: 16.5
coord: 129..166
e-value: 6.1E-4
score: 20.5
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 135..167
score: 8.537
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 51..93
score: 12.246
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 94..134
score: 13.783
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 28..181
e-value: 2.2E-36
score: 127.2
NoneNo IPR availablePANTHERPTHR19848WD40 REPEAT PROTEINcoord: 49..168
NoneNo IPR availablePANTHERPTHR19848:SF4E3 UBIQUITIN-PROTEIN LIGASE TRAF7coord: 49..168
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 71..85
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 112..126
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 51..175
score: 26.788
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 44..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1420contigEcto-sp13_S_contig1420:2676..4131 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1420.3262.1mRNA_Ecto-sp13_S_contig1420.3262.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1420 2676..4133 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1420.3262.1 ID=prot_Ecto-sp13_S_contig1420.3262.1|Name=mRNA_Ecto-sp13_S_contig1420.3262.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=182bp
QRSSSAACKHLSRNDAPGKGRAEEPSHDMSNLSYHQPKVELKPTRLLART
IYAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDG
ITFVMPGPDGRVLTASEDRTLRVWDVETGECLRVIRSHSGAVTSLCLAGP
DRIVTGSSDRKLRVFDVAGHLHGETELDSEIT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf