mRNA_Ecto-sp13_S_contig1420.3262.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1420.3262.1
Unique NamemRNA_Ecto-sp13_S_contig1420.3262.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1420.3262.1 vs. uniprot
Match: A0A6H5L7H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7H8_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 2.390e-61
Identity = 169/177 (95.48%), Postives = 171/177 (96.61%), Query Frame = 1 
Query:   16 AACKHLSRNDAPGKGRAEEPSHDMSNLSYHQPKVELKPTRLLARTIYAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDGITFVMPGPDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGHLHGETELDSEIT 546
            AA +  S NDA G+GRAE PSHDMSNLSYHQPKVELKPTRLLARTIYAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDGITFVMPGPDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGHLHGETELDSEIT
Sbjct:   28 AAQQQRSGNDALGQGRAENPSHDMSNLSYHQPKVELKPTRLLARTIYAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDGITFVMPGPDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGHLHGETELDSEIT 204
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BLAST of mRNA_Ecto-sp13_S_contig1420.3262.1 vs. uniprot
Match: D8LF88_ECTSI (WD repeat-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF88_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 1.240e-56
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1 
Query:   85 MSNLSYHQPKVELKPTRLLARTIYAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDGITFVMPGPDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGHLHGETELDSEIT 546
            MSNLSYHQPKVELKPTRLLARTIYAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDGITFVMPGPDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGHLHGETELDSEIT
Sbjct:    1 MSNLSYHQPKVELKPTRLLARTIYAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDGITFVMPGPDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGHLHGETELDSEIT 154
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BLAST of mRNA_Ecto-sp13_S_contig1420.3262.1 vs. uniprot
Match: UPI001B88401B (WD40-repeat-containing domain protein n=1 Tax=Suillus bovinus TaxID=48563 RepID=UPI001B88401B)

HSP 1 Score: 55.8 bits (133), Expect = 7.510e-6
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:  121 LKPTRLLARTIYAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDGITFVMPGPDGR 333
            L P+ +  RT   H + V +VA F  +  R++TGS D T +LWDLKTG  L+K +GH+ G+  +    DG+
Sbjct:   90 LIPSTIPPRTFEDHEATVQAVAVFPDK-RRMVTGSEDNTLRLWDLKTGAVLKKMKGHSGGVWALTVSRDGQ 159
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BLAST of mRNA_Ecto-sp13_S_contig1420.3262.1 vs. uniprot
Match: A0A0D0BX00_9AGAM (Unplaced genomic scaffold CY34scaffold_16, whole genome shotgun sequence n=1 Tax=Suillus luteus UH-Slu-Lm8-n1 TaxID=930992 RepID=A0A0D0BX00_9AGAM)

HSP 1 Score: 54.3 bits (129), Expect = 2.660e-5
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:  127 PTRLLARTIYAHHSYVSSVAFFGSQCDR--LLTGSYDETAKLWDLKTGLALQKFQGHTDGIT 306
            PT +  R    H  ++ +V  F   CDR  ++TGS D T +LWDLKTG AL+K +GH + +T
Sbjct:    3 PTTIPLRQFKDHEDFIRAVTVF---CDRRLMVTGSRDGTLRLWDLKTGTALKKMEGHRNDVT 61
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BLAST of mRNA_Ecto-sp13_S_contig1420.3262.1 vs. uniprot
Match: A0A643C2B2_BALPH (Uncharacterized protein (Fragment) n=1 Tax=Balaenoptera physalus TaxID=9770 RepID=A0A643C2B2_BALPH)

HSP 1 Score: 52.0 bits (123), Expect = 5.380e-5
Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:  148 TIYAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDGI 303
            T    + Y +    F  Q +RLLTGS D+TA++WD++TG  LQ  +GHTD I
Sbjct:   66 TALCKNKYQAEKISFNPQGNRLLTGSSDKTARIWDVQTGQCLQVLEGHTDEI 117
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BLAST of mRNA_Ecto-sp13_S_contig1420.3262.1 vs. uniprot
Match: A0A1Z4NIE4_9CYAN (WD repeat protein with Ser/Thr protein kinase motif n=1 Tax=Calothrix sp. NIES-3974 TaxID=2005462 RepID=A0A1Z4NIE4_9CYAN)

HSP 1 Score: 52.8 bits (125), Expect = 6.960e-5
Identity = 26/84 (30.95%), Postives = 43/84 (51.19%), Query Frame = 1 
Query:  106 QPKVELKPTRLLARTI--------YAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDGITFVMPGPDGR 333
            +P +  K  +  A T+        +  H +  S   F    ++L++GS+DET ++WDLK G  LQ   GH DG+  V+   +G+
Sbjct:   30 KPPISAKSQQTTALTVNKNPLQYTFKRHIWDVSTLVFSPDANKLISGSFDETIQIWDLKQGKLLQSLPGHKDGVNAVVISRNGK 113
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1420.3262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L7H8_9PHAE2.390e-6195.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF88_ECTSI1.240e-56100.00WD repeat-containing protein (Partial) (Fragment) ... [more]
UPI001B88401B7.510e-640.85WD40-repeat-containing domain protein n=1 Tax=Suil... [more]
A0A0D0BX00_9AGAM2.660e-543.55Unplaced genomic scaffold CY34scaffold_16, whole g... [more]
A0A643C2B2_BALPH5.380e-546.15Uncharacterized protein (Fragment) n=1 Tax=Balaeno... [more]
A0A1Z4NIE4_9CYAN6.960e-530.95WD repeat protein with Ser/Thr protein kinase moti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1420contigEcto-sp13_S_contig1420:2676..4133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score184.9
Seed ortholog evalue3.4e-44
Seed eggNOG ortholog2880.D8LF88
Model size550
KEGG koko:K02084
KEGG Pathwayko01524,ko04115,ko04210,ko04214,ko04215,ko05010,ko05012,ko05014,ko05016,ko05134,ko05152,ko05161,ko05200,ko05222,map01524,map04115,map04210,map04214,map04215,map05010,map05012,map05014,map05016,map05134,map05152,map05161,map05200,map05222
KEGG ModuleM00685
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.maturation of LSU-rRNA
EggNOG OGsCOG2319@1,KOG0300@2759
Cds size546
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462759.146095-CDS-Ecto-sp13_S_contig1420:2675..29181681462759.146095-CDS-Ecto-sp13_S_contig1420:2675..2918Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1420 2676..2918 +
1681462759.1644564-CDS-Ecto-sp13_S_contig1420:3828..41311681462759.1644564-CDS-Ecto-sp13_S_contig1420:3828..4131Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1420 3829..4131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1420.3262.1prot_Ecto-sp13_S_contig1420.3262.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1420 2676..4131 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1420.3262.1

>prot_Ecto-sp13_S_contig1420.3262.1 ID=prot_Ecto-sp13_S_contig1420.3262.1|Name=mRNA_Ecto-sp13_S_contig1420.3262.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=182bp
QRSSSAACKHLSRNDAPGKGRAEEPSHDMSNLSYHQPKVELKPTRLLART
IYAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDG
ITFVMPGPDGRVLTASEDRTLRVWDVETGECLRVIRSHSGAVTSLCLAGP
DRIVTGSSDRKLRVFDVAGHLHGETELDSEIT
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mRNA from alignment at Ecto-sp13_S_contig1420:2676..4133+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1420.3262.1 ID=mRNA_Ecto-sp13_S_contig1420.3262.1|Name=mRNA_Ecto-sp13_S_contig1420.3262.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1458bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1420:2676..4133+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCGCAGCAGCAGCGCAGCGTGCAAGCATCTCAGCCGGAACGACGCTCC
GGGGAAAGGCAGGGCAGAGGAACCATCGCATGACATGTCGAACCTGAGCT
ACCATCAGCCTAAGGTGGAGCTCAAGCCCACGAGGTTGCTGGCGCGCACG
ATCTACGCCCACCACAGCTACGTTTCAAGCGTCGCGTTCTTTGGATCCCA
GTGCGACCGTCTCCTCACAGGCAGCTACGATGAAACCGCGAAGGTGTGCA
CTTGCTCCACAGACTACGTGAATCTCCTTTCTCCGCCCTCCCCTCTATTG
ATTTTCACCTATCTTTTTTTTCTCTCTCTCTCTCACCTCTCGCGCACGAA
CGCGGAGAACGAAACGAGATGATTTTTTGAAATTTCAATTTCAAGCAAGC
GGTCCCCCCTTGGCCGTGCAGACGAGGACATTGCAACCGCTGTCTGGATT
GGATAGATCGCCTTGGAGCGTGTTTCCATTCTGCGCTGGAACCCATAGCA
TAAACTGCTGCTGCACGTGCTACATGAACTGATTCCGCTCCCGGAAATGG
GTGTGATTTGTGTTCGCTCGACGAACGAATGAAAATGAACTTACATTTCC
CTCTTACAGTTCGACACAAGCAATTGGACACAAGTAGTCAGCAGTCCTAT
AATACTACATGTACGTTCAGCAGGACGTGCATTGGAGTGCTTCCGCGTTC
GCATGGGCACCTTGTAAATGCACGGCGGTAGCTTCTAACTTTGTTTTCAT
CGGCAGCAATGCCCTTCAACCCTTGGTGAGGACCAAGGTTTTGCTCAGGC
ATGACATGGAGCAAATCCTTCATCCCAACCGGAACCGTCCCTACATGTAG
CATCTTTCCGAACGATTCTCTACCTATTGTAGGGCCTGTACTGCTCTAGT
TGCGAAATTTTACATGGGTGCACTTGCAGCACGCAGCTGCATGCAGACGG
CAGAAGGCAGGCAGAATCCTCAGACCGCAAGGTTCAATGCTGGTAATCAT
CAACCCTGCCATCGCAAACGCGTGAATATTCTTGTTTCAACCCCGCTCTT
GCTTTCTCAACAACGCAACCCACGTTCTCTCTGTCCCTGCTACAATCGAC
ATTTTTCATTGCGTTTCCCGAACCCAACCCCCAATCCCAATCGTAATGCC
CAGCTTTGGGACCTCAAGACCGGCCTTGCCCTTCAGAAGTTCCAGGGCCA
CACCGACGGCATAACCTTCGTCATGCCGGGCCCTGACGGCCGAGTCCTGA
CGGCCAGCGAGGACCGCACCCTGCGCGTCTGGGACGTGGAGACGGGCGAG
TGCCTCCGCGTCATCCGCTCCCACAGCGGCGCGGTCACCTCGCTCTGCCT
GGCCGGGCCCGACCGCATCGTCACCGGCTCCTCCGACAGGAAGCTCCGGG
TGTTCGACGTCGCTGGCCATCTCCACGGCGAGACCGAGCTCGACAGCGAG
ATCACGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1420:2676..4133+

>mRNA_Ecto-sp13_S_contig1420.3262.1 ID=mRNA_Ecto-sp13_S_contig1420.3262.1|Name=mRNA_Ecto-sp13_S_contig1420.3262.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1420:2676..4133+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCGCAGCAGCAGCGCAGCGTGCAAGCATCTCAGCCGGAACGACGCTCC
GGGGAAAGGCAGGGCAGAGGAACCATCGCATGACATGTCGAACCTGAGCT
ACCATCAGCCTAAGGTGGAGCTCAAGCCCACGAGGTTGCTGGCGCGCACG
ATCTACGCCCACCACAGCTACGTTTCAAGCGTCGCGTTCTTTGGATCCCA
GTGCGACCGTCTCCTCACAGGCAGCTACGATGAAACCGCGAAGCTTTGGG
ACCTCAAGACCGGCCTTGCCCTTCAGAAGTTCCAGGGCCACACCGACGGC
ATAACCTTCGTCATGCCGGGCCCTGACGGCCGAGTCCTGACGGCCAGCGA
GGACCGCACCCTGCGCGTCTGGGACGTGGAGACGGGCGAGTGCCTCCGCG
TCATCCGCTCCCACAGCGGCGCGGTCACCTCGCTCTGCCTGGCCGGGCCC
GACCGCATCGTCACCGGCTCCTCCGACAGGAAGCTCCGGGTGTTCGACGT
CGCTGGCCATCTCCACGGCGAGACCGAGCTCGACAGCGAGATCACG
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