mRNA_Ecto-sp13_S_contig10329.326.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10329.326.1 vs. uniprot
Match: D8LFP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP2_ECTSI) HSP 1 Score: 218 bits (554), Expect = 8.600e-61 Identity = 110/119 (92.44%), Postives = 115/119 (96.64%), Query Frame = 3 Query: 3 DARSAQVVMRAIRKVAATQRAVICTIHQPSTYLFDMFDALLLLKKGGQVVFLGPLGDNSSNLISYLQSIRSTVPIRDHVNPAKWMLEVIGAGTTGKNNPQIFADFYKKSKLRSTSMAKV 359
DARSAQVVMRAIRKVAATQRAVICTIHQPSTYLF+MFDALLLLKKGGQVVF GPLGDNSSNLISYLQSI STVPIRDHVNPA WMLEVIGAGTTGK NPQ++ADFYKKSKLR+TSMAK+
Sbjct: 936 DARSAQVVMRAIRKVAATQRAVICTIHQPSTYLFEMFDALLLLKKGGQVVFFGPLGDNSSNLISYLQSIPSTVPIRDHVNPATWMLEVIGAGTTGKTNPQMYADFYKKSKLRNTSMAKL 1054
BLAST of mRNA_Ecto-sp13_S_contig10329.326.1 vs. uniprot
Match: D8LFN4_ECTSI (Pleiotropic drug resistance transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN4_ECTSI) HSP 1 Score: 206 bits (523), Expect = 1.250e-56 Identity = 103/119 (86.55%), Postives = 112/119 (94.12%), Query Frame = 3 Query: 3 DARSAQVVMRAIRKVAATQRAVICTIHQPSTYLFDMFDALLLLKKGGQVVFLGPLGDNSSNLISYLQSIRSTVPIRDHVNPAKWMLEVIGAGTTGKNNPQIFADFYKKSKLRSTSMAKV 359
DARSAQVVMRAIRKVAATQRAVICTIHQPSTYLF+MFDALLLLKKGGQVVF GPLG+NS+NLI YLQSI +TVPIRDHVNPA WMLEVIGAGTTGK+NPQ++AD YK+SKLR SMAK+
Sbjct: 1024 DARSAQVVMRAIRKVAATQRAVICTIHQPSTYLFEMFDALLLLKKGGQVVFFGPLGENSTNLICYLQSIPNTVPIRDHVNPATWMLEVIGAGTTGKSNPQMYADSYKRSKLRKNSMAKL 1142
BLAST of mRNA_Ecto-sp13_S_contig10329.326.1 vs. uniprot
Match: A0A6H5K7U8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U8_9PHAE) HSP 1 Score: 192 bits (489), Expect = 4.700e-53 Identity = 102/138 (73.91%), Postives = 112/138 (81.16%), Query Frame = 3 Query: 3 DARSAQVVMRAIRKVAATQRAVICTIHQPSTYLFDMFDALLLLKKGGQVVFLGPLGDNSSNLISYLQ-------------------SIRSTVPIRDHVNPAKWMLEVIGAGTTGKNNPQIFADFYKKSKLRSTSMAKV 359
DARSAQVVMRAIRKVAATQRAVICTIHQPSTYLF+MFDALLLLKKGGQVVF GPLG+NS+NLI YLQ SI +TVPIRDHVNPA WMLEVIGAGTTGK+NPQ++AD YK+SKLR SMA++
Sbjct: 240 DARSAQVVMRAIRKVAATQRAVICTIHQPSTYLFEMFDALLLLKKGGQVVFFGPLGENSTNLICYLQVKNTNTHIPRSCNFICYLQSIPNTVPIRDHVNPATWMLEVIGAGTTGKSNPQMYADSYKRSKLRKNSMAEL 377
BLAST of mRNA_Ecto-sp13_S_contig10329.326.1 vs. uniprot
Match: D7FQN0_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN0_ECTSI) HSP 1 Score: 174 bits (440), Expect = 1.070e-46 Identity = 89/113 (78.76%), Postives = 98/113 (86.73%), Query Frame = 3 Query: 3 DARSAQVVMRAIRKVAATQRAVICTIHQPSTYLFDMFDALLLLKKGGQVVFLGPLGDNSSNLISYLQSIRSTVPIRDHVNPAKWMLEVIGAGTTGKNNPQIFADFYKKSKLRS 341
DARSAQVVMRAIRKVAAT RAVICTIHQPSTYLF+MFD+LLLLKKGGQ VF G LG SS LISYL S+ +T IRD+VNPA WMLE IGAGTTGK +PQ++AD YKKSKL+S
Sbjct: 173 DARSAQVVMRAIRKVAATGRAVICTIHQPSTYLFEMFDSLLLLKKGGQTVFFGELGAESSKLISYLLSVPNTPSIRDNVNPATWMLECIGAGTTGKVDPQVYADVYKKSKLKS 285
BLAST of mRNA_Ecto-sp13_S_contig10329.326.1 vs. uniprot
Match: A0A835ZIR5_9STRA (ABC-2 type transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIR5_9STRA) HSP 1 Score: 156 bits (395), Expect = 1.590e-39 Identity = 81/135 (60.00%), Postives = 103/135 (76.30%), Query Frame = 3 Query: 3 DARSAQVVMRAIRKVAATQRAVICTIHQPSTYLFDMFDALLLLKKGGQVVFLGPLGDNSSNLISYLQSIRSTVPIRDHVNPAKWMLEVIGAGTTGKNNPQIFADFYKKSKLRSTSMAKVAPTVSDISRPVASTSP 407
DARSAQVV+RAIRKVA+T RAVICTIHQPSTYLF+MFD+LLLLKKGG+VV+ G LG +SS LI+++ ++ T PI NPA WMLE IGAGT+ NPQ++AD+YK +L+ + +A+V + RP TSP
Sbjct: 881 DARSAQVVLRAIRKVASTGRAVICTIHQPSTYLFEMFDSLLLLKKGGEVVYFGELGVHSSALIAHISAVPGTAPIAPRANPATWMLEQIGAGTSSHANPQMYADWYKNGQLKRSVVAEV----ERLQRPELGTSP 1011
BLAST of mRNA_Ecto-sp13_S_contig10329.326.1 vs. uniprot
Match: A0A835Z0F1_9STRA (ABC-2 type transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0F1_9STRA) HSP 1 Score: 148 bits (374), Expect = 1.010e-36 Identity = 73/112 (65.18%), Postives = 89/112 (79.46%), Query Frame = 3 Query: 3 DARSAQVVMRAIRKVAATQRAVICTIHQPSTYLFDMFDALLLLKKGGQVVFLGPLGDNSSNLISYLQSIRSTVPIRDHVNPAKWMLEVIGAGTTGKNNPQIFADFYKKSKLR 338
DARSAQVV+RAIRKVA T R ++CTIHQPSTYLF+MFD +LLLKKGG+ V+ G LG +SS LIS+L SI T PI ++ NPA WMLE IGAGT+ NPQ +AD+Y S+L+
Sbjct: 955 DARSAQVVVRAIRKVATTGRTIVCTIHQPSTYLFEMFDLMLLLKKGGETVYFGELGTHSSALISHLSSIPGTRPIANNANPATWMLEQIGAGTSTSANPQAYADWYSNSQLK 1066
BLAST of mRNA_Ecto-sp13_S_contig10329.326.1 vs. uniprot
Match: A0A6A3ITF2_9STRA (ABC transporter domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3ITF2_9STRA) HSP 1 Score: 128 bits (321), Expect = 1.900e-30 Identity = 63/111 (56.76%), Postives = 83/111 (74.77%), Query Frame = 3 Query: 3 DARSAQVVMRAIRKVAATQRAVICTIHQPSTYLFDMFDALLLLKKGGQVVFLGPLGDNSSNLISYLQSIRSTVPIRDHVNPAKWMLEVIGAGTTGKNNPQIFADFYKKSKL 335
DARSA+++M +RKVA T R ++CTIHQPST +F++FD+LLLLK+GG++VF G LGDN+ NLISY +SI V + ++ NPA WMLEVIGAG + QI DF + KL
Sbjct: 280 DARSAKLIMDGVRKVADTGRTIVCTIHQPSTVVFEVFDSLLLLKRGGEMVFFGDLGDNAVNLISYFESIDGVVKLEENYNPATWMLEVIGAGVGNNDGGQI--DFVSRFKL 388
BLAST of mRNA_Ecto-sp13_S_contig10329.326.1 vs. uniprot
Match: A0A067CHU5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CHU5_SAPPC) HSP 1 Score: 129 bits (323), Expect = 6.150e-30 Identity = 61/97 (62.89%), Postives = 78/97 (80.41%), Query Frame = 3 Query: 3 DARSAQVVMRAIRKVAATQRAVICTIHQPSTYLFDMFDALLLLKKGGQVVFLGPLGDNSSNLISYLQSIRSTVPIRDHVNPAKWMLEVIGAGTTGKN 293
DARSA+++M IRK+A+T R V+CTIHQPST +F+MFD+LLLLK+GG+ VF G LG N+S+LISY +SI +T P+ + NPA WMLEVIGAG KN
Sbjct: 877 DARSAKIIMTGIRKIASTGRTVVCTIHQPSTEVFEMFDSLLLLKRGGETVFFGDLGTNASHLISYFKSIPNTPPLVEGANPATWMLEVIGAGVEAKN 973
BLAST of mRNA_Ecto-sp13_S_contig10329.326.1 vs. uniprot
Match: A0A6A3IQA9_9STRA (ABC transporter G family member 29 n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3IQA9_9STRA) HSP 1 Score: 128 bits (321), Expect = 8.410e-30 Identity = 63/111 (56.76%), Postives = 83/111 (74.77%), Query Frame = 3 Query: 3 DARSAQVVMRAIRKVAATQRAVICTIHQPSTYLFDMFDALLLLKKGGQVVFLGPLGDNSSNLISYLQSIRSTVPIRDHVNPAKWMLEVIGAGTTGKNNPQIFADFYKKSKL 335
DARSA+++M +RKVA T R ++CTIHQPST +F++FD+LLLLK+GG++VF G LGDN+ NLISY +SI V + ++ NPA WMLEVIGAG + QI DF + KL
Sbjct: 278 DARSAKLIMDGVRKVADTGRTIVCTIHQPSTVVFEVFDSLLLLKRGGEMVFFGDLGDNAVNLISYFESIDGVVKLEENYNPATWMLEVIGAGVGNNDGGQI--DFVSRFKL 386
BLAST of mRNA_Ecto-sp13_S_contig10329.326.1 vs. uniprot
Match: T0R2G3_SAPDV (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R2G3_SAPDV) HSP 1 Score: 127 bits (318), Expect = 2.820e-29 Identity = 60/97 (61.86%), Postives = 76/97 (78.35%), Query Frame = 3 Query: 3 DARSAQVVMRAIRKVAATQRAVICTIHQPSTYLFDMFDALLLLKKGGQVVFLGPLGDNSSNLISYLQSIRSTVPIRDHVNPAKWMLEVIGAGTTGKN 293
DARSA+++M IRK+A+T R V+CTIHQPST +F+MFD+LLLLK+GG+ VF G LG N+S LI Y +SI +T P+ + NPA WMLEVIGAG KN
Sbjct: 920 DARSAKIIMTGIRKIASTGRTVVCTIHQPSTEVFEMFDSLLLLKRGGETVFFGDLGTNASQLIQYFKSIPNTPPLVEGANPATWMLEVIGAGVEAKN 1016 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10329.326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10329.326.1 >prot_Ecto-sp13_S_contig10329.326.1 ID=prot_Ecto-sp13_S_contig10329.326.1|Name=mRNA_Ecto-sp13_S_contig10329.326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp MRAIRKVAATQRAVICTIHQPSTYLFDMFDALLLLKKGGQVVFLGPLGDNback to top mRNA from alignment at Ecto-sp13_S_contig10329:2..4194- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10329.326.1 ID=mRNA_Ecto-sp13_S_contig10329.326.1|Name=mRNA_Ecto-sp13_S_contig10329.326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4193bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10329:2..4194- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10329:2..4194- >mRNA_Ecto-sp13_S_contig10329.326.1 ID=mRNA_Ecto-sp13_S_contig10329.326.1|Name=mRNA_Ecto-sp13_S_contig10329.326.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10329:2..4194- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |