prot_Ecto-sp13_S_contig142.3258.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig142.3258.1
Unique Nameprot_Ecto-sp13_S_contig142.3258.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length497
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig142.3258.1 vs. uniprot
Match: D8LH58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH58_ECTSI)

HSP 1 Score: 941 bits (2431), Expect = 0.000e+0
Identity = 483/495 (97.58%), Postives = 491/495 (99.19%), Query Frame = 0 
Query:    2 SFPSSSKGTPASSRRHAMSSTQLRMASSFDPIEAVKEAIRGDGRVNPVYRQMVVLAVKSGAAGAAQYLDPAGESSTSTGKRALHKAVQAHVGQLMDAVLSPAPDEENAEAIKRILDRCEKQQKGAGATLALGYLDTVWWLPAPIRPAIGALAILAVYEALRRFGVFTRFGMVKLPDTELAPTDTVPEPVEGMEDSPIFKAAQFETDARSLSYYTLIGAFLVSTMSYVISGGDGQVAWSGMLLLTFVAFEREVLHSALYSEAIIRVQPMLTQLTSAHEAGHVAAAYLTGLPVATYTLGGLGSLQHGDEVGCGPSCNIINAELSTARIWLPEELLTGPASEPEPRLEARMTYPWEDPARLQNLVELDFSSPEIPHKDRVAPFDTEGRHAMSNRMALTSMGGIAGEMMANGFDVGGGADYFNMRRRFKGLWPYMSQDDLRRTEKWAFLENLKIFKAERTAMELLAKNMRERRPIGRLMFDLDRSLTSTEFELSAAERR 496
            SFPSSSKGTPASSRRHAMSSTQLRMASSF+PIEAVKEA+ GDGRVNPVYRQMVVLAVKSGAAGAA+YL+P+GESSTSTGKRAL+KAVQAHVGQLMDAVLSPAPDEENAEAIKRILDRCE+Q KGAGATLALGYLDTVWWLPAPIRPAIGALAILAVYEALRRFGVFTRFGMVKLPDTELAPT+TVPEPVEGMEDSPIFKAAQFETDARSLSYYTLIGAFLVSTMSYVISGGDGQVAWSGMLLLTFVAFEREVLHSALYSEAIIRVQPMLTQLTSAHEAGHVAAAYLTGLPVATYTLGGLGSLQHGDEVGCGPSCNIINAELSTARIWLPEELLTGPASEPEPRLEARMTYPWEDPARLQNLVELDFSS EIPHKDRVAPFDTEGRHAMSNRMALTSMGGIAGEMMANGFDVGGGADYFNMRRRFKGLWPYMSQDDLRRTEKWAFLENLKIFKAERTAMELLAKNMRERRPIGRLM DLDRSLTSTEFELSAAERR
Sbjct:   32 SFPSSSKGTPASSRRHAMSSTQLRMASSFNPIEAVKEAMGGDGRVNPVYRQMVVLAVKSGAAGAARYLNPSGESSTSTGKRALNKAVQAHVGQLMDAVLSPAPDEENAEAIKRILDRCEEQHKGAGATLALGYLDTVWWLPAPIRPAIGALAILAVYEALRRFGVFTRFGMVKLPDTELAPTETVPEPVEGMEDSPIFKAAQFETDARSLSYYTLIGAFLVSTMSYVISGGDGQVAWSGMLLLTFVAFEREVLHSALYSEAIIRVQPMLTQLTSAHEAGHVAAAYLTGLPVATYTLGGLGSLQHGDEVGCGPSCNIINAELSTARIWLPEELLTGPASEPEPRLEARMTYPWEDPARLQNLVELDFSSSEIPHKDRVAPFDTEGRHAMSNRMALTSMGGIAGEMMANGFDVGGGADYFNMRRRFKGLWPYMSQDDLRRTEKWAFLENLKIFKAERTAMELLAKNMRERRPIGRLMLDLDRSLTSTEFELSAAERR 526
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig142.3258.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH58_ECTSI0.000e+097.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33471FAMILY NOT NAMEDcoord: 109..474
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..210
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 231..235
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 236..254
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 211..230
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 255..496

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig142contigEcto-sp13_S_contig142:712..4755 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig142.3258.1mRNA_Ecto-sp13_S_contig142.3258.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig142 209..4927 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig142.3258.1 ID=prot_Ecto-sp13_S_contig142.3258.1|Name=mRNA_Ecto-sp13_S_contig142.3258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=497bp
MSFPSSSKGTPASSRRHAMSSTQLRMASSFDPIEAVKEAIRGDGRVNPVY
RQMVVLAVKSGAAGAAQYLDPAGESSTSTGKRALHKAVQAHVGQLMDAVL
SPAPDEENAEAIKRILDRCEKQQKGAGATLALGYLDTVWWLPAPIRPAIG
ALAILAVYEALRRFGVFTRFGMVKLPDTELAPTDTVPEPVEGMEDSPIFK
AAQFETDARSLSYYTLIGAFLVSTMSYVISGGDGQVAWSGMLLLTFVAFE
REVLHSALYSEAIIRVQPMLTQLTSAHEAGHVAAAYLTGLPVATYTLGGL
GSLQHGDEVGCGPSCNIINAELSTARIWLPEELLTGPASEPEPRLEARMT
YPWEDPARLQNLVELDFSSPEIPHKDRVAPFDTEGRHAMSNRMALTSMGG
IAGEMMANGFDVGGGADYFNMRRRFKGLWPYMSQDDLRRTEKWAFLENLK
IFKAERTAMELLAKNMRERRPIGRLMFDLDRSLTSTEFELSAAERR*
back to top