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Homology
BLAST of mRNA_Ecto-sp13_S_contig142.3258.1 vs. uniprot
Match: D8LH58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH58_ECTSI) HSP 1 Score: 961 bits (2485), Expect = 0.000e+0 Identity = 494/507 (97.44%), Postives = 502/507 (99.01%), Query Frame = 3
Query: 471 GFGYAFTSSKVMSFPSSSKGTPASSRRHAMSSTQLRMASSFDPIEAVKEAIRGDGRVNPVYRQMVVLAVKSGAAGAAQYLDPAGESSTSTGKRALHKAVQAHVGQLMDAVLSPAPDEENAEAIKRILDRCEKQQKGAGATLALGYLDTVWWLPAPIRPAIGALAILAVYEALRRFGVFTRFGMVKLPDTELAPTDTVPEPVEGMEDSPIFKAAQFETDARSLSYYTLIGAFLVSTMSYVISGGDGQVAWSGMLLLTFVAFEREVLHSALYSEAIIRVQPMLTQLTSAHEAGHVAAAYLTGLPVATYTLGGLGSLQHGDEVGCGPSCNIINAELSTARIWLPEELLTGPASEPEPRLEARMTYPWEDPARLQNLVELDFSSPEIPHKDRVAPFDTEGRHAMSNRMALTSMGGIAGEMMANGFDVGGGADYFNMRRRFKGLWPYMSQDDLRRTEKWAFLENLKIFKAERTAMELLAKNMRERRPIGRLMFDLDRSLTSTEFELSAAERR 1991
GFGYAFTSSKV SFPSSSKGTPASSRRHAMSSTQLRMASSF+PIEAVKEA+ GDGRVNPVYRQMVVLAVKSGAAGAA+YL+P+GESSTSTGKRAL+KAVQAHVGQLMDAVLSPAPDEENAEAIKRILDRCE+Q KGAGATLALGYLDTVWWLPAPIRPAIGALAILAVYEALRRFGVFTRFGMVKLPDTELAPT+TVPEPVEGMEDSPIFKAAQFETDARSLSYYTLIGAFLVSTMSYVISGGDGQVAWSGMLLLTFVAFEREVLHSALYSEAIIRVQPMLTQLTSAHEAGHVAAAYLTGLPVATYTLGGLGSLQHGDEVGCGPSCNIINAELSTARIWLPEELLTGPASEPEPRLEARMTYPWEDPARLQNLVELDFSS EIPHKDRVAPFDTEGRHAMSNRMALTSMGGIAGEMMANGFDVGGGADYFNMRRRFKGLWPYMSQDDLRRTEKWAFLENLKIFKAERTAMELLAKNMRERRPIGRLM DLDRSLTSTEFELSAAERR
Sbjct: 20 GFGYAFTSSKVTSFPSSSKGTPASSRRHAMSSTQLRMASSFNPIEAVKEAMGGDGRVNPVYRQMVVLAVKSGAAGAARYLNPSGESSTSTGKRALNKAVQAHVGQLMDAVLSPAPDEENAEAIKRILDRCEEQHKGAGATLALGYLDTVWWLPAPIRPAIGALAILAVYEALRRFGVFTRFGMVKLPDTELAPTETVPEPVEGMEDSPIFKAAQFETDARSLSYYTLIGAFLVSTMSYVISGGDGQVAWSGMLLLTFVAFEREVLHSALYSEAIIRVQPMLTQLTSAHEAGHVAAAYLTGLPVATYTLGGLGSLQHGDEVGCGPSCNIINAELSTARIWLPEELLTGPASEPEPRLEARMTYPWEDPARLQNLVELDFSSSEIPHKDRVAPFDTEGRHAMSNRMALTSMGGIAGEMMANGFDVGGGADYFNMRRRFKGLWPYMSQDDLRRTEKWAFLENLKIFKAERTAMELLAKNMRERRPIGRLMLDLDRSLTSTEFELSAAERR 526
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2166 |
| Hectar predicted targeting category | other localisation |
| Exons | 8 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-24_000640.1 |
| Cds size | 1491 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462758.353567-UTR-Ecto-sp13_S_contig142:208..711 | 1681462758.353567-UTR-Ecto-sp13_S_contig142:208..711 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig142 209..711 + |
| 1681462758.453129-UTR-Ecto-sp13_S_contig142:4755..4927 | 1681462758.453129-UTR-Ecto-sp13_S_contig142:4755..4927 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig142 4756..4927 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462758.3651595-CDS-Ecto-sp13_S_contig142:711..813 | 1681462758.3651595-CDS-Ecto-sp13_S_contig142:711..813 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig142 712..813 + |
| 1681462758.3775787-CDS-Ecto-sp13_S_contig142:1182..1338 | 1681462758.3775787-CDS-Ecto-sp13_S_contig142:1182..1338 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig142 1183..1338 + |
| 1681462758.3887765-CDS-Ecto-sp13_S_contig142:1908..2156 | 1681462758.3887765-CDS-Ecto-sp13_S_contig142:1908..2156 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig142 1909..2156 + |
| 1681462758.4035056-CDS-Ecto-sp13_S_contig142:2538..2659 | 1681462758.4035056-CDS-Ecto-sp13_S_contig142:2538..2659 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig142 2539..2659 + |
| 1681462758.4131734-CDS-Ecto-sp13_S_contig142:2931..3057 | 1681462758.4131734-CDS-Ecto-sp13_S_contig142:2931..3057 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig142 2932..3057 + |
| 1681462758.4215775-CDS-Ecto-sp13_S_contig142:3424..3563 | 1681462758.4215775-CDS-Ecto-sp13_S_contig142:3424..3563 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig142 3425..3563 + |
| 1681462758.4342604-CDS-Ecto-sp13_S_contig142:3957..4301 | 1681462758.4342604-CDS-Ecto-sp13_S_contig142:3957..4301 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig142 3958..4301 + |
| 1681462758.443691-CDS-Ecto-sp13_S_contig142:4500..4755 | 1681462758.443691-CDS-Ecto-sp13_S_contig142:4500..4755 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig142 4501..4755 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig142.3258.1 >prot_Ecto-sp13_S_contig142.3258.1 ID=prot_Ecto-sp13_S_contig142.3258.1|Name=mRNA_Ecto-sp13_S_contig142.3258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=497bp
MSFPSSSKGTPASSRRHAMSSTQLRMASSFDPIEAVKEAIRGDGRVNPVY RQMVVLAVKSGAAGAAQYLDPAGESSTSTGKRALHKAVQAHVGQLMDAVL SPAPDEENAEAIKRILDRCEKQQKGAGATLALGYLDTVWWLPAPIRPAIG ALAILAVYEALRRFGVFTRFGMVKLPDTELAPTDTVPEPVEGMEDSPIFK AAQFETDARSLSYYTLIGAFLVSTMSYVISGGDGQVAWSGMLLLTFVAFE REVLHSALYSEAIIRVQPMLTQLTSAHEAGHVAAAYLTGLPVATYTLGGL GSLQHGDEVGCGPSCNIINAELSTARIWLPEELLTGPASEPEPRLEARMT YPWEDPARLQNLVELDFSSPEIPHKDRVAPFDTEGRHAMSNRMALTSMGG IAGEMMANGFDVGGGADYFNMRRRFKGLWPYMSQDDLRRTEKWAFLENLK IFKAERTAMELLAKNMRERRPIGRLMFDLDRSLTSTEFELSAAERR* back to topmRNA from alignment at Ecto-sp13_S_contig142:209..4927+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig142.3258.1 ID=mRNA_Ecto-sp13_S_contig142.3258.1|Name=mRNA_Ecto-sp13_S_contig142.3258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4719bp|location=Sequence derived from alignment at Ecto-sp13_S_contig142:209..4927+ (Ectocarpus species13 EcNAP12_S_4_19m) CTCGACCGAATTAAGAGGTCCCGAAAAATGCGGCGTGATTAAGCAGTACA
GGGCACAGGGCTGGGCAAGGGCGTACCGGCACGCACCTAATGCTGTCGCA
ACTCACTTCGCACAAGACCACCCCCTGACTCCGCCCCGCATGCGATGCCC
ATAACCCAGTGCTGTCGAACATGATGTTGCCAGCGCTGCTCAGCGGGGGG
GGGGTGAGGCTGGGCGCTACTGGTTATTTATTTTTCTCCAAAGTAACCGC
AGTCAAGCCCTTATGCTACTCGAACCAACATAGCTGTAGATACAGGCATA
GTTGCAGTAAAAACACCGCTGTTGCTGGGTAACACGAGAAGGTAAATTTT
TATCGAACGGTGTAAATATGCAATGATACAGCTCTCACCCACAACCTTCG
ACTCTGCATCTCTACCCGCTGGCCAACATGTACATGATTTTCATGTCGTG
TCTGCCAACACACGCACCCAGGGTTTGGGTACGCTTTTACCTCTTCAAAG
GTCATGTCGTTTCCCAGCTCAAGCAAGGGTACACCCGCCTCGAGCAGGCG
CCATGCCATGTCCTCTACACAACTCAGGATGGCTAGCTCCTTCGATCCAA
TTGAGGTAAATTGCGGATAGAACGTATGGCGCCAAGTCGGCAGCGCTGCT
GTATGTTCGCCTTCGATAGGGCGGCCGGCGCTGAAACCGGACGAAATTCA
GTAACCCGAGGGTAGGCGGTAGGCTGCATCAAACGGCTGGAAAATGCCAA
AAAGTGCAATCGTGTTTGTGTTGATAGCCTAAGAAAGTGCAGCGTGGAGT
TCTCCTTGATCTCTACTGGAAATACAAAAGCAAACCAATTGGACTTTGTT
AGTTGATCCAAAAGTACAGTGCGGCTGTTGTCGCTGCGTTTCCGCGACAC
AGGGGTCTCGTGTAAGTTCCGTCCCTCGCTTTGGGTGCTCTTTGCATTGT
TTTTGTTTGTCTCTCACTCCTAAGGCGGTGAAAGAAGCGATTCGCGGAGA
CGGAAGGGTTAACCCCGTTTACCGGCAGATGGTTGTGCTGGCCGTCAAGT
CTGGAGCTGCAGGGGCAGCTCAGTACTTGGACCCTGCCGGGGAGAGCTCC
ACCTCCACAGGGAAACGCGCTCTTCACAAGGTCAGCTACGAGCACGGTGT
TGTATTGTAGCTTTACGAGGGGGGTAAAACGTACCGCTTTTATATGTGAG
TTTTCTGAATCTTCCGCGTCCACAAATATGCTTTCACGCGACAGACACGC
GTACGTTGCGCTTGAAGGCGTGCCCCGCTAGTCAACGAAATACCCACATC
TTTGGGGAAAGATACAGTTTAGTAGCAAAAGCCCAAAGAGAGCGCCTCAG
TCGACATGTAGAAAGGCGAGGTCACGTGGAGTGTCCGATAATTCGGACCC
CTTGTGTAGCAGTTTTGGCCGTCGTGGGCGTTGACAGCTGCTGAGCATGT
TCTCTTCGGGTACTTGTAAAATCGGCGGAATACGTAAGACACCGAGCTTG
CTCTACCACCCGCCCGTCAATCATTTCACACACCCTGTCGTACATGTATC
TCACACTCACTCACTCACAACGTCGCCGAAACGCGAATTCCGTTGAGGCA
ACGCAAGATGACCACCGATGATTCAGTTTACTTGCAACGTCAACGATAAT
CACGCCCGCCCCTCTTCCTAATTGTTGCCGCCGCCCATCCGCGCCCTCAG
GCAGTACAAGCCCACGTGGGCCAATTGATGGACGCTGTCCTCAGCCCGGC
CCCAGACGAAGAAAACGCCGAAGCCATCAAGAGGATCTTGGACCGCTGCG
AGAAGCAGCAAAAAGGAGCGGGCGCGACCCTGGCGCTGGGATACCTGGAC
ACGGTGTGGTGGCTTCCCGCCCCGATTCGTCCCGCGATCGGAGCTTTGGC
TATCCTCGCCGTTTACGAGGCGCTCCGGCGGTTCGGCGTTTTCACCAGGT
GTGACTTGTACCCTACTGTAGACTGAATGGTCCTAGGCATACCCTTGAAA
CACACATGCAAAAACCATGCTCTTGTCCAATCTTGACAGGTGTACGTTGC
AGACTCCGTTACCCGCTGAGTTGAATCACTACGTTCTGACGTTTACATGT
ATTTGTTCTCGTATTCTTATTACTACAAAGGGGAAAAGACTAGGGGTCGT
TCCTCACTTCCGTCTTCTACAGCTGGACATGAATGTGCCTGCCGCACGGA
CCCTTAACCTTAAACTTCATCCCACAGGGGAGAATTTGATTTGCAAACCA
TACCCAATCGTCCGTGCTGTCTCCATCTCCATCATGACTGAATTGCCTCC
TCAATTCCACTGCGTGTGGCATCTATTTAGGTTCGGCATGGTAAAGCTTC
CTGATACCGAGTTGGCACCCACGGATACCGTCCCTGAGCCCGTTGAGGGT
ATGGAAGACTCACCGATATTCAAGGCCGCCCAGTTCGAAACTGATGCGAG
GGTGAGTTTTTGTTTTGTTGTTGATTGGTCGTGAGATAGAAATTGTGTGA
AAGTATCGTCCTTACATGTATGCAGTATGCACAGATGCCATCTTACAGTA
GTTACGCCCAGTGCCTTTCGTGCTGATACAGTCAGTCGTACCCGTTGAAC
GTTTGTTTTCCCCAGAGGCATCAACAGTCCTGCGCTGGAAAGTATGTCTC
ACATTTCCTCCACGTTTTTTTTTGTCTCCCCCGTCTCCCCCGACGTGAAT
TCATGTTTCTCTCGTTGTCGCAGAGCTTATCCTACTACACCCTCATCGGG
GCGTTTTTAGTTTCCACGATGTCCTATGTTATTTCGGGAGGTGACGGGCA
GGTGGCATGGAGTGGGATGCTCCTGCTGACCTTCGTGGCCTTCGAGAGGG
TGAGTTACTTAAAGGACGGGTTGAAACAAGGTCTCGGCCGGTGTCGCCAA
GTACCTCGAGCCATGATTGCATGATGGAGAGAGAGACCCCACCCACGGCG
AAACGAAGCATCTGAAACCGCACCTCTTCTACTAGATTCCGCCCTATCTG
TGGCCGTCACCGGTACCATGGTGCACTGCGTGCATAATTTGGACGAGGTT
TGCGTGGTGTTGTCGATGTCTTCGCATCCTCTTGGCAATCCGTGTGAGTT
GTGCAGCTGGTAGTCCACTTGGAATTCTTGGGCAAGGCCCTACCTGACGC
GGCGTTTGTCCCTCCCCTGTTTTGGGTGTGCATGTCGGTGCATGTCAATG
CTTCGCTTCTCTTCAGGAAGTCCTGCACTCGGCACTGTACAGCGAGGCGA
TTATTCGGGTTCAGCCGATGCTGACGCAGTTAACCTCTGCACACGAAGCT
GGACACGTCGCCGCTGCGTATCTCACGGGTCTCCCTGTGGCTACGTATAC
GCTTGGTGAGCTTTGCATCTGTATGATGTGCTTGTTTGTCCTGTTTTCTC
GGTGGCTCGTGCGTTGAGCAGGGCAGGTGAATGGTCTTGGGGGTATGAAC
ACGAGATGTTTTATGTGGTCCTTCTGGGCATCGCACTGCCCGTGCCGTGT
TTGCGGTACCCCCACAACTACGCTCCTACATTTCGACCTCAGTGGATCGG
CTGACGCCGTCAATGTTTCCGCATTTCCTTGTGTGGGTGCACGCTGCACG
CTCTGCGAGCTCCGGGTGATACCTGTAGCCTCCTGTCTGAGGCCAACAGT
GGCATTCTGTGTTCGACAAGAAGATGCCTTCCTCATGCCGGCCGTAACGT
TGGTTGTCGTGTGTATCGATCTCATTCACTCCAACGCGCGTTGCCACAGG
AGGGCTGGGCTCACTACAGCATGGAGACGAGGTTGGATGTGGTCCTAGCT
GTAACATTATCAACGCTGAGTTGAGTACAGCTAGAATATGGCTTCCGGAA
GAGCTCCTCACGGGGCCAGCGTCGGAGCCGGAACCAAGACTCGAAGCGCG
GATGACATACCCGTGGGAAGACCCAGCGCGATTACAGAACTTGGTGGAGC
TGGATTTTTCGTCGCCGGAGATTCCTCACAAGGATCGAGTAGCACCGTTT
GATACAGAGGGGCGTCACGCAATGTCAAATCGCATGGCATTGACTTCGAT
GGGCGGGATCGCTGGAGAGATGATGGCGAACGGCTTTGATGTGGTGAGAA
GTTGCTATAGCCTTTGTGTTGATCTCCCACGTTTGTTGGTGATGAACCGA
TTCCATACTTTTGTAAGAAACACCGATATGCGTTATATTCGAACGTCCAG
GTGGTCTTGGCAGCCTCTCAACAGCACGAAGTTTGGTACTCTGCATGTTC
ACGTCAATGTTCTGTCCTCTATGCTGCGTGGTCTGTGGACAGGGTGGTGG
CGCCGACTATTTCAACATGCGCCGGAGATTCAAGGGCCTATGGCCCTACA
TGTCGCAAGACGACTTGAGGAGGACGGAGAAATGGGCGTTTCTCGAAAAC
TTGAAAATCTTCAAGGCGGAGCGCACAGCCATGGAACTCTTGGCGAAAAA
TATGCGGGAACGTCGCCCGATAGGGCGCTTGATGTTTGATTTGGATCGAT
CGTTGACATCCACGGAATTCGAACTAAGCGCTGCTGAAAGGAGATGATCG
AACGTCGGCATCTCCGTGCGGATCGTAAGCACGAGGCTTCATTCAAGTGC
TGTAGGTGCTCCAGGTGGATACCAAGTTTCGGGGGCTGCGTTCTGCATTT
TGGCGTCTTGTACATATGAACGTGCTTCCTGCACGCTTCAAGCACCTGTT
TTAAACACGTTTGTCTGAG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig142:209..4927+ >mRNA_Ecto-sp13_S_contig142.3258.1 ID=mRNA_Ecto-sp13_S_contig142.3258.1|Name=mRNA_Ecto-sp13_S_contig142.3258.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1491bp|location=Sequence derived from alignment at Ecto-sp13_S_contig142:209..4927+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGTCGTTTCCCAGCTCAAGCAAGGGTACACCCGCCTCGAGCAGGCGCCA TGCCATGTCCTCTACACAACTCAGGATGGCTAGCTCCTTCGATCCAATTG AGGCGGTGAAAGAAGCGATTCGCGGAGACGGAAGGGTTAACCCCGTTTAC CGGCAGATGGTTGTGCTGGCCGTCAAGTCTGGAGCTGCAGGGGCAGCTCA GTACTTGGACCCTGCCGGGGAGAGCTCCACCTCCACAGGGAAACGCGCTC TTCACAAGGCAGTACAAGCCCACGTGGGCCAATTGATGGACGCTGTCCTC AGCCCGGCCCCAGACGAAGAAAACGCCGAAGCCATCAAGAGGATCTTGGA CCGCTGCGAGAAGCAGCAAAAAGGAGCGGGCGCGACCCTGGCGCTGGGAT ACCTGGACACGGTGTGGTGGCTTCCCGCCCCGATTCGTCCCGCGATCGGA GCTTTGGCTATCCTCGCCGTTTACGAGGCGCTCCGGCGGTTCGGCGTTTT CACCAGGTTCGGCATGGTAAAGCTTCCTGATACCGAGTTGGCACCCACGG ATACCGTCCCTGAGCCCGTTGAGGGTATGGAAGACTCACCGATATTCAAG GCCGCCCAGTTCGAAACTGATGCGAGGAGCTTATCCTACTACACCCTCAT CGGGGCGTTTTTAGTTTCCACGATGTCCTATGTTATTTCGGGAGGTGACG GGCAGGTGGCATGGAGTGGGATGCTCCTGCTGACCTTCGTGGCCTTCGAG AGGGAAGTCCTGCACTCGGCACTGTACAGCGAGGCGATTATTCGGGTTCA GCCGATGCTGACGCAGTTAACCTCTGCACACGAAGCTGGACACGTCGCCG CTGCGTATCTCACGGGTCTCCCTGTGGCTACGTATACGCTTGGAGGGCTG GGCTCACTACAGCATGGAGACGAGGTTGGATGTGGTCCTAGCTGTAACAT TATCAACGCTGAGTTGAGTACAGCTAGAATATGGCTTCCGGAAGAGCTCC TCACGGGGCCAGCGTCGGAGCCGGAACCAAGACTCGAAGCGCGGATGACA TACCCGTGGGAAGACCCAGCGCGATTACAGAACTTGGTGGAGCTGGATTT TTCGTCGCCGGAGATTCCTCACAAGGATCGAGTAGCACCGTTTGATACAG AGGGGCGTCACGCAATGTCAAATCGCATGGCATTGACTTCGATGGGCGGG ATCGCTGGAGAGATGATGGCGAACGGCTTTGATGTGGGTGGTGGCGCCGA CTATTTCAACATGCGCCGGAGATTCAAGGGCCTATGGCCCTACATGTCGC AAGACGACTTGAGGAGGACGGAGAAATGGGCGTTTCTCGAAAACTTGAAA ATCTTCAAGGCGGAGCGCACAGCCATGGAACTCTTGGCGAAAAATATGCG GGAACGTCGCCCGATAGGGCGCTTGATGTTTGATTTGGATCGATCGTTGA CATCCACGGAATTCGAACTAAGCGCTGCTGAAAGGAGATGA back to top
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