mRNA_Ecto-sp13_S_contig14198.3256.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14198.3256.1
Unique NamemRNA_Ecto-sp13_S_contig14198.3256.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14198.3256.1 vs. uniprot
Match: A0A6H5J7F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7F0_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 5.240e-26
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 2 
Query:   29 QHAAQADADEFIDGMDGISARVQLAPTLANLEVYVDPRRLSEGHAPGILVESVCLDPSKGVVVMLTSDHGYTS 247
            +H AQADADEFIDG+DGI+ARVQL+  L NL VY+DPRRLSEG APG  VE+V LDP KGVVVMLT+DH YTS
Sbjct:   88 EHHAQADADEFIDGVDGITARVQLSSALTNLWVYIDPRRLSEGRAPGTRVETVGLDPRKGVVVMLTTDHDYTS 160
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BLAST of mRNA_Ecto-sp13_S_contig14198.3256.1 vs. uniprot
Match: D7FUS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUS6_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.110e-24
Identity = 53/73 (72.60%), Postives = 61/73 (83.56%), Query Frame = 2 
Query:   29 QHAAQADADEFIDGMDGISARVQLAPTLANLEVYVDPRRLSEGHAPGILVESVCLDPSKGVVVMLTSDHGYTS 247
            +H A+ DADEFIDG+DGISA VQL+PTL N+ VYVDPRRLSEG APG  V++V LDPSKGVVVMLT+ H Y S
Sbjct:   89 KHPAEVDADEFIDGVDGISASVQLSPTLTNVWVYVDPRRLSEGRAPGTCVKTVGLDPSKGVVVMLTTPHDYMS 161
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BLAST of mRNA_Ecto-sp13_S_contig14198.3256.1 vs. uniprot
Match: D7G896_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G896_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.380e-23
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 2 
Query:   29 QHAAQADADEFIDGMDGISARVQLAPTLANLEVYVDPRRLSEGHAPGILVESVCLDPSKGVVVMLTSDHGYTS 247
            +H A ADADEFIDG+DGI+ARVQL+  L NL VY+DPRRLSEG A G  VE+V LDPSKGVVVMLT+D+GYTS
Sbjct:   86 KHHAHADADEFIDGVDGITARVQLSSVLTNLWVYIDPRRLSEGRALGTSVETVGLDPSKGVVVMLTTDYGYTS 158
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14198.3256.1 vs. uniprot
Match: A0A6H5JA28_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA28_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 9.320e-21
Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 2 
Query:   29 QHAAQADADEFIDGMDGISARVQLAPTLANLEVYVDPRRLSEGHAPGILVESVCLDPSKGVVVMLTSDHGYTS 247
            +H A+ DADEFIDG+DGISARV L+P L N+ VYV PRRLSEG A G  V++V LDPSKGV+VMLT+ H Y S
Sbjct:   89 KHPAEVDADEFIDGVDGISARVHLSPALTNIWVYVGPRRLSEGRASGTCVKTVGLDPSKGVLVMLTTPHDYIS 161
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14198.3256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5J7F0_9PHAE5.240e-2675.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUS6_ECTSI1.110e-2472.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G896_ECTSI1.380e-2373.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA28_9PHAE9.320e-2167.12PARP catalytic domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14198contigEcto-sp13_S_contig14198:2..1894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size608
Hectar predicted targeting categoryother localisation
Exons3
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462758.286824-UTR-Ecto-sp13_S_contig14198:1..2061681462758.286824-UTR-Ecto-sp13_S_contig14198:1..206Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14198 2..206 -
1681462758.3245025-UTR-Ecto-sp13_S_contig14198:1824..18941681462758.3245025-UTR-Ecto-sp13_S_contig14198:1824..1894Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14198 1825..1894 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462758.2967145-CDS-Ecto-sp13_S_contig14198:206..2841681462758.2967145-CDS-Ecto-sp13_S_contig14198:206..284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14198 207..284 -
1681462758.3076303-CDS-Ecto-sp13_S_contig14198:1424..15351681462758.3076303-CDS-Ecto-sp13_S_contig14198:1424..1535Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14198 1425..1535 -
1681462758.3158617-CDS-Ecto-sp13_S_contig14198:1680..18241681462758.3158617-CDS-Ecto-sp13_S_contig14198:1680..1824Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14198 1681..1824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14198.3256.1prot_Ecto-sp13_S_contig14198.3256.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14198 207..1824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14198.3256.1

>prot_Ecto-sp13_S_contig14198.3256.1 ID=prot_Ecto-sp13_S_contig14198.3256.1|Name=mRNA_Ecto-sp13_S_contig14198.3256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
MDGISARVQLAPTLANLEVYVDPRRLSEGHAPGILVESVCLDPSKGVVVM
LTSDHGYTSQMVESRLGKAGGTGGDGRAETAHLRKYDEHKAQLCLADEEL
RPALRLHGIH*
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mRNA from alignment at Ecto-sp13_S_contig14198:2..1894-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14198.3256.1 ID=mRNA_Ecto-sp13_S_contig14198.3256.1|Name=mRNA_Ecto-sp13_S_contig14198.3256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1893bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14198:2..1894- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTGCATCGCCCCCCACGCTTCGGGGCAGCATGCCGCACAAGCTGATG
CAGACGAGTTCATCGACGGCATGGACGGTATATCTGCGAGGGTCCAGTTA
GCCCCGACACTGGCGAACCTCGAGGTTTACGTCGACCCTAGGAGGCTTTC
CGAAGGCCATGCTCCCGGCATTTTGGTCGAGTCTGTCTGCCTGGATCCCA
GTAAAGGAGTGGTGGTAAGAAGAACGCGATAAGTCAGGATCGGAACCGTT
TGACCGCATCTGTTTCTACTGAGTGCGTTTTTGGGACGTACCAATATGAA
AGTAGTCCGATGTGCCTGGTGAGCACGTTGTTTATGGCGTTCGCGCCTCG
AACATGCAGGTGATGCTCACCTCCGACCATGGGTACACATCGCAAATGGT
CGAAAGTAGACTGGGCAAGGCAGGTGGCACCGGCGGCGATGGACGAGCCG
AAACTGCGCACCTACGAAAGGTAGGGGCTGAACTTTGTAGACGGCTTAGG
TTTGGGCCGTGTACAAAGGAAAGGCATTTATTTCAAACATGCCCCCCGCT
ATCCTGGGCTACGTAGGGACTTGGTTTGTTTGGTATATACCCTAAATTGT
GGCCGCAGACGGTCCCTGTGTGGCCTTCAAAGAGCAGCACAGAAGAGGGG
CCGGGTAGACCAGATGTCACGACGGGAAGCCGACTGCCCAAAACGACGAC
GATGATGAGAAATATGGCTTTAGGGCTAAGGCATGAGGACTTGGGTACTT
CCAGCCGTAGATGGAACATCAACCCTGTGAGTCATCTGGTACGGAGCCCT
TGATCCTCATGCACGAGCGTTCCCGCAAACGATCCACCCCCGGTACGGTT
AGAGCTCCGTGACAATTTAGGGCGCAGTCGATTTGGATCATAGAAATCGT
GTTGTTTGAGAAACGTCCAGAACCTTACACGGCCAACATCCAGAAGCCTA
CGAACGTACATACTCAACCACTCGCGCAGAAAAATGGAAGTCCTTCGATT
GAAAGTCCGCAAAAGACACGGAACAGGAACGTACGAGAATTTCGATGCAC
CACGTGTCGAGTGGGGGCCGTGCAGAATCAGCCAACAACCTATCCACAAG
GATAAGGACGTCGATGACAACAACCGTGAACTCAATCACGGACATGGACG
ACCCACCAGCAGCATTGGCGAGACGTTCCCGCACCAGTGGATACTGCAGA
AGGCTAGTCTTCAGACCGGATTCATGCCAACTTGGTCCCGCCACATGAGA
CGGTTGCGCACGACAATCGTTCAAGAGGGTTGGGTATCGGCGCCGGCAAC
ACGCCGGGTGGTAAAGATGATTAGCGAATCCTCGGTGGTGTCGGCCGAAC
TTGCTGCCTACGTACTCCGGGTCTCGAAGGAGCCTTGGGAAGGGTGCTAC
GGAGGTGGTGGTACGGGATGATGGGTGTATGCCACAGTGGGGTACTGACG
AGGTTGTGTTAGTCCATGACGTTTAACTGCCTTCAGCGTATGGAGAAAAC
AATGGCGTTTTGCTGCAATATTTTACGTGACTGCGATCGTGTAGGGCTAC
AGCTCTCCAACAACAGCACGACAGAGATCTCACACCCCGTGTATTTCCCC
CCCGTCCCAGTACGATGAACACAAGGCACAGCTTTGCCTTGCTGACGAGG
AACTGCGACCGGCGCTAAGGTTGCATGGAATTCACTGAGCTGAAGAGGAG
GCTCCCACAGGTTGACGAGGCGAGTGTCGGTTGCCAATGCGTTCAACAGA
ACAACTGCCACAGAAGGAGGAAGTATACCAGGTAAAGGTTCGGAAGCCGT
GTACACCAGGTAAAGGTTTGGAAGCCGTTGTCGTTGTTCTCCATTTGATT
CGGACCACGCCTTCGGGGGAACACGACTAACGATTTGGGCAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14198:2..1894-

>mRNA_Ecto-sp13_S_contig14198.3256.1 ID=mRNA_Ecto-sp13_S_contig14198.3256.1|Name=mRNA_Ecto-sp13_S_contig14198.3256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14198:2..1894- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGGTATATCTGCGAGGGTCCAGTTAGCCCCGACACTGGCGAACCT
CGAGGTTTACGTCGACCCTAGGAGGCTTTCCGAAGGCCATGCTCCCGGCA
TTTTGGTCGAGTCTGTCTGCCTGGATCCCAGTAAAGGAGTGGTGGTGATG
CTCACCTCCGACCATGGGTACACATCGCAAATGGTCGAAAGTAGACTGGG
CAAGGCAGGTGGCACCGGCGGCGATGGACGAGCCGAAACTGCGCACCTAC
GAAAGTACGATGAACACAAGGCACAGCTTTGCCTTGCTGACGAGGAACTG
CGACCGGCGCTAAGGTTGCATGGAATTCACTGA
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