prot_Ecto-sp13_S_contig14198.3257.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14198.3257.1
Unique Nameprot_Ecto-sp13_S_contig14198.3257.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length218
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14198.3257.1 vs. uniprot
Match: D8LGX6_ECTSI (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGX6_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.300e-6
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 0 
Query:  169 PEELEAAAGGGEGRVEEDGSTVPEAEAATETGAAPEEGDNVPHL 212
            PEE+EAAA GGEGR EEDGST P+AEA T   AA EEGD+ PHL
Sbjct:  378 PEEIEAAARGGEGREEEDGSTAPDAEATTAAEAAREEGDHAPHL 421
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14198.3257.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGX6_ECTSI2.300e-672.73PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14198contigEcto-sp13_S_contig14198:3004..4425 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14198.3257.1mRNA_Ecto-sp13_S_contig14198.3257.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14198 2925..4425 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14198.3257.1 ID=prot_Ecto-sp13_S_contig14198.3257.1|Name=mRNA_Ecto-sp13_S_contig14198.3257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=218bp
MRVRCCTLAPYFCSEKLRGLVVGTVPAQGSPSSTPSHSPERADRAQERRL
RGRRQTRGGADGPYHRHRGHRHRRAKICVPGTSLAGRRRVPRVAVSTPAS
TRDVAPGRLHVKGRRLRWAQGSREAAERAVPYQAGLEAELGPSHPGPARS
DGFDGPLAAELGLGSGSSPEELEAAAGGGEGRVEEDGSTVPEAEAATETG
AAPEEGDNVPHLGLDWR*
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