mRNA_Ecto-sp13_S_contig14195.3255.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14195.3255.1
Unique NamemRNA_Ecto-sp13_S_contig14195.3255.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14195.3255.1 vs. uniprot
Match: D8LNX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNX7_ECTSI)

HSP 1 Score: 670 bits (1729), Expect = 4.270e-239
Identity = 354/396 (89.39%), Postives = 363/396 (91.67%), Query Frame = 1
Query:    1 MFTCAFLRVYRSHSVLLWHKGLMWSIPLQLGITIMPFVLTPAALNSGADALVFDEETNECERDSEMPEAIAVGFMALLTVATAALTCRLQAVRIQAPEESSAAVSTTVVVLAATLGLPALHEGLEAERDERRRAMLVASSLTSLAIVAPPLWGAVTSFVLARDHEVVASGEFGLFRAHQPGDLQKITQDRMKVETLASSPEGRDMPESLAMTSFFSDSLDRECLRDYFLLQASTMRILDRYIREGAPVSIPLSSCCRDEMLTSKASSAFIFETARQEVMARMGGGGLNYRISPSDTFAFGKGVVGDKVGENSSGLGTPSSLPPSPPXXXXXXXXXXXXXKLPPGAFPAKAQPTRRTKTAGRAAVSGGEIKRHGLGILGGRTSDLLAVFGLRPDGKL 1188
            MF CAFLRVYRSHSVLLWH G MW +PLQLGITIMPFVLTP AL SGA+ALVFDEETNECERDSEMPEAIAVGFMALL  ATAALTCRLQAVR QAPEE +AAVSTTVVVLAATLGLPALH+GLEAERDERRRAMLV SSLTSLAIVAPPLW AVTSFVLARDHEVVASGEFGL R HQPGDLQK+TQDRMKV TLASSPEGRDMPESLAMTSFFSDSLDREC+RDYFLLQA TMRILDRYIREGAPVSIPLSSCCRDEMLTSKASSAFIFETARQEVMARMGGGGL YRIS SD+FAFGKG+ GDKVGENSSG GTPSSLPPSPP     XXXX    KLPPGAFP KAQP R TKTAGR AVSGGEIKRHGLGILGGRTSDLLA+FGLRPDGKL
Sbjct:    1 MFACAFLRVYRSHSVLLWHNGFMWPVPLQLGITIMPFVLTPTALTSGAEALVFDEETNECERDSEMPEAIAVGFMALLAAATAALTCRLQAVRFQAPEEFTAAVSTTVVVLAATLGLPALHKGLEAERDERRRAMLVTSSLTSLAIVAPPLWDAVTSFVLARDHEVVASGEFGLIRTHQPGDLQKMTQDRMKVSTLASSPEGRDMPESLAMTSFFSDSLDRECVRDYFLLQAVTMRILDRYIREGAPVSIPLSSCCRDEMLTSKASSAFIFETARQEVMARMGGGGLTYRISLSDSFAFGKGLPGDKVGENSSGPGTPSSLPPSPPNPYPQXXXXQ---KLPPGAFPPKAQPARGTKTAGRTAVSGGEIKRHGLGILGGRTSDLLAMFGLRPDGKL 393          
BLAST of mRNA_Ecto-sp13_S_contig14195.3255.1 vs. uniprot
Match: A0A6H5KGZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGZ4_9PHAE)

HSP 1 Score: 403 bits (1035), Expect = 3.680e-135
Identity = 235/396 (59.34%), Postives = 241/396 (60.86%), Query Frame = 1
Query:    1 MFTCAFLRVYRSHSVLLWHKGLMWSIPLQLGITIMPFVLTPAALNSGADALVFDEETNECERDSEMPEAIAVGFMALLTVATAALTCRLQAVRIQAPEESSAAVSTTVVVLAATLGLPALHEGLEAERDERRRAMLVASSLTSLAIVAPPLWGAVTSFVLARDHEVVASGEFGLFRAHQPGDLQKITQDRMKVETLASSPEGRDMPESLAMTSFFSDSLDRECLRDYFLLQASTMRILDRYIREGAPVSIPLSSCCRDEMLTSKASSAFIFETARQEVMARMGGGGLNYRISPSDTFAFGKGVVGDKVGENSSGLGTPSSLPPSPPXXXXXXXXXXXXXKLPPGAFPAKAQPTRRTKTAGRAAVSGGEIKRHGLGILGGRTSDLLAVFGLRPDGKL 1188
            MF CAFLRVYRSHSVLLWH G MW +PLQLGITIMPFVLTPAALNSGADALVFDEETNECERDSEMPEAI VGFMALL  ATAALTCRLQAVR Q                                                                                             DRMKV T ASSPEGR+MPE LAMTSFFSDSLDREC+RDYFLLQAST+RILDRYIREGAPV+IPLSSCCRDEMLTSKASSAFIFETARQEVMARMGGGGL YR                                                 KLPPGAFPAKAQPTR TKTAGRAAVSGG+IKRHGLGILGGRTSDLLAVFGLRPDGKL
Sbjct:   41 MFACAFLRVYRSHSVLLWHNGFMWPVPLQLGITIMPFVLTPAALNSGADALVFDEETNECERDSEMPEAIVVGFMALLAAATAALTCRLQAVRFQ---------------------------------------------------------------------------------------------DRMKVRTFASSPEGRNMPEFLAMTSFFSDSLDRECVRDYFLLQASTLRILDRYIREGAPVTIPLSSCCRDEMLTSKASSAFIFETARQEVMARMGGGGLTYRQQKQQ--------------------------------------------KLPPGAFPAKAQPTRGTKTAGRAAVSGGDIKRHGLGILGGRTSDLLAVFGLRPDGKL 299          
BLAST of mRNA_Ecto-sp13_S_contig14195.3255.1 vs. uniprot
Match: A0A6H5KSY8_9PHAE (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY8_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 5.530e-46
Identity = 107/289 (37.02%), Postives = 165/289 (57.09%), Query Frame = 1
Query:    1 MFTCAFLRVYRSHSVLLWHKGLMWSIPLQLGITIMPFVLTPAALNSGADALVFDEETNECERDSEMPEAIAVGFMALLTVATAALTCRLQAVRIQAPEESSAAVSTTVVVLAATLGLPALHEGLEAERDERRRAMLVASSLTSLAIVAPPLWGAVTSFVLARDHEVVASGEFGLFRAHQPGDLQKITQDRMKVETLASSPEGRDMPESLAMTSFFSDSLDRECLRDYFLLQASTMRILDRYIREGA--PVSIPLSSCCRDEMLTSKASSAFIFETARQEVMARMGGGGL 861
            +F+ AFLRVYR+H VL+   G MW +  QL + ++PF L PA L+S + A+ FD  + EC+ +S +PE  A   M +L   +  L  RL+ VR+QAP E   A++ +V++  A   LP +H  +E +RD RR   L+ ++LT + IVA P    + S++ + + ++ +SG+F +        L  I     K + +ASS   R++P    +  FF   + RE +  Y  LQ++TMRILD+Y R+G     ++P+S  C    L  KASS FIF+ AR EV+  +G G L
Sbjct:  105 LFSTAFLRVYRAHDVLIRQDGGMWPVVAQLALLLLPFTLAPAFLSSSSVAM-FDPASMECQPESTVPEWSAFVVMGILAAFSLVLAFRLRVVRVQAPYEFETALAISVILAVAAAALPLVHWEMEGDRDGRREITLLTTALTGVGIVAAPALRFLYSYI-SDEEKLKSSGDFCIGEWRSKKKLDYIIMQSRKFQEVASS--SRNVPNFPVVDEFFRALIAREEITSYPKLQSTTMRILDKYFRKGVLHATALPISEACITTTLQQKASSTFIFDRARAEVLDGIGVGKL 389          
BLAST of mRNA_Ecto-sp13_S_contig14195.3255.1 vs. uniprot
Match: D8LNY0_ECTSI (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNY0_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 1.050e-43
Identity = 115/325 (35.38%), Postives = 176/325 (54.15%), Query Frame = 1
Query:    1 MFTCAFLRVYRSHSVLLWHKGLMWSIPLQLGITIMPFVLTPAALNSGADALVFDEETNECERDSEMPEAIAVGFMALLTVATAALTCRLQAVRIQAPEESSAAVSTTVVVLAATLGLPALHEGLEAERDERRRAMLVASSLTSLAIVAPPLWGAVTSFVLARDHEVVASGEFGLFRAHQPGDLQKITQDRMKVETLASSPEGRDMPESLAMTSFFSDSLDRECLRDYFLLQASTMRILDRYIREGA--PVSIPLSSCCRDEMLTSKASSAFIFETARQEVMARMGGG-----GLNYRISPSDTFA--FGKGVVGDKVGENSSGLG 948
            +F+ AFLR+YR+H VL+   G MW +  QL + ++PF L PA L+S   A+ FD  + EC+ +S +PE+ A   M +L   +  L  RL+  R+QAP E   A + +V++ AA   LP +H  +E +RD RR  ML+ ++LT + +VA P    + S+V + + ++ +SG+F +        +  I     K + +ASS   RD+P    +  FF   + RE +  Y  LQ++TMRIL++Y R+G     ++P+S  C    L  KASS FIF+ AR EV+  +G G     G +  I PS   A    +   G     NS G G
Sbjct:  105 LFSTAFLRIYRTHDVLVRQDGAMWPVVAQLVLLLLPFTLAPAFLSSSGVAM-FDPASMECQPESTVPESSAFVVMGILAAFSLVLAVRLRVARVQAPYEFETAATISVILAAAAAALPLVHWEMEGDRDGRRGLMLLITALTGVGVVAAPALRFLYSYV-SDEEKLKSSGDFCIGEWRSKKKVDYIIMQCRKFQEVASS--SRDVPNFPVVDEFFRALIAREEITSYPKLQSTTMRILNKYFRKGVLHAAALPISEACITTTLQQKASSTFIFDRARAEVLDGIGVGKLPQIGEDGPIGPSAVIARTHSEATTGANSNLNSGGSG 425          
BLAST of mRNA_Ecto-sp13_S_contig14195.3255.1 vs. uniprot
Match: A0A6H5KX62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX62_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 8.130e-34
Identity = 104/297 (35.02%), Postives = 163/297 (54.88%), Query Frame = 1
Query:    1 MFTCAFLRVYRSHSVLLWHKGLMWSIPLQLGITIMPFVLTPAALNSGADALV--FDEETNECERDSEMP---EAIAVGFMALLTVATAALTCRLQAVRIQAPEESSAAVSTTVVVLAATLGLPALHEGLEAERDE-----RRRAMLVASSLTSLAIVAPPLWGAVTSFVLARDHEVVASGEFGLFR-AHQPGDLQKI-TQDRMK-VETLASSPEGRDMPESLAMT--SFFSDSLDRECLRDYFLLQASTMRILDRYIREGAPVSIPLSSCCRDEMLTSKASSAFIFETARQEVMARM 846
            +F+C  +RVYR H+VL+ H G+M  + +Q+   ++PF++ PA + + AD     FD    EC    + P   E +A G +A + +A   L  RL+ VR QAP E  +AV+T+  +  A + LP +   +    DE     RR AMLV ++L  + +VA P+   +   V  +D E  + G +G  +   Q    Q +  Q +++ V+ L   P GRD     + T  + F D + R+   DY L QA+TMRILD Y+R+GAP  +PLS+ CR  ++ S ASS + F  AR+E++ R+
Sbjct:   98 LFSCGVVRVYRYHNVLVRHSGVMLPVTVQVATLLLPFLIGPAMVLARADDATPTFDSTAGECLETWQPPDISEWVAAGILAAVALA---LAFRLRIVRSQAPHEFLSAVATSASLALAVVSLPLVETIMRDTADETAMHRRRTAMLVITALVGMVVVAAPVLHPLRLLVF-KDDEFNSGGVYGFGKWGKQTESAQDVHVQSQIRWVDNLVRRP-GRDALGQASATDAACFLDMVARDEEEDYCLRQAATMRILDTYLRDGAPRFVPLSAECRGGIVRSMASSVYTFGRAREEILDRL 389          
BLAST of mRNA_Ecto-sp13_S_contig14195.3255.1 vs. uniprot
Match: D7FTZ9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ9_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.450e-15
Identity = 82/289 (28.37%), Postives = 137/289 (47.40%), Query Frame = 1
Query:   16 FLRVYRSHSVLLWHKGLMWSIPLQLGITIMPFVLTPAALNSGADALVFDEETNECERDSEMPEAIAVGFMAL--LTVATAALTCRLQAVRIQAPEESSAAVSTTV-----VVLAATLGLPALHEGLEAERDERRRAMLVASSLTSLAIVAPPLWGAVTSFVLAR---DHEVVASGEFGLFRAHQPGDLQKITQDRMKVETLASSPEGRDMPESLA--MTSFFSDSLDRECLRDYFLLQASTMRILDRYIREGAPVSIPLSSCCRDEMLTSKASSAFIFETARQEVMARM 846
            F+RVY    +++ H   + S   Q+ +     ++ P        A VFDE  N C   S     + +G  A+   T+      C  Q  R++       A+  T+     +VL+ T+G+  + +         RR  +V   LT+  +    LWG++   +L +   D E + S   G      P  L+    +++ VE L     G  M   +A  + +F+ DSLDRE +  +F  QA+TMRI+ RYIR+GAP  + +S  CR+E++++  ++  IF+ AR EV+A M
Sbjct:  103 FIRVYLMWRIMVRHDEDVGSPKGQIFLLSSISLVPPLIALLVPGAYVFDETINSCNTTSTS-RTVGLGMNAVGFYTICFLWFVCGRQLRRVRKQFNEYEAIKWTLSCLILLVLSYTVGVNIILDNKH--HVLARRLAIVYPVLTTHTL----LWGSIGEPLLKKWEGDREYLWSFTRGFSEMPSPAQLKASLAEQLSVEQLRDEFRGY-MRTKVAQELVNFYLDSLDREEIHGFFGRQAATMRIVARYIRDGAPEQVNISEACREEIVSTNVTAYDIFDRARAEVLAVM 383          
BLAST of mRNA_Ecto-sp13_S_contig14195.3255.1 vs. uniprot
Match: D7FU00_ECTSI (Regulator of G-protein signaling 13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU00_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 4.290e-11
Identity = 46/124 (37.10%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  487 DHEVVASGEFGLFRAHQPGDLQKITQDRMKVETLASSPEGRDMPESLA--MTSFFSDSLDRECLRDYFLLQASTMRILDRYIREGAPVSIPLSSCCRDEMLTSKASSAFIFETARQEVMARMGG 852
            D E + S   G      P  L+    +++ VE L     G  M   +A  +  F+ +SLDRE +  +F  QA TMRI+ RYIREGAP  + +S  CR+++L++  ++  IF+ AR EV+A M G
Sbjct:  163 DEEYLWSFTKGFSELPSPAQLKASLAEQLSVEQLRIEFRGY-MQTKVARELVDFYLESLDREEIHGFFGRQAVTMRIVARYIREGAPEQVNISGACREDILSTDVTAYDIFDRARAEVLALMEG 285          
BLAST of mRNA_Ecto-sp13_S_contig14195.3255.1 vs. uniprot
Match: D7FTZ5_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ5_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 6.850e-11
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  631 MTSFFSDSLDRECLRDYFLLQASTMRILDRYIREGAPVSIPLSSCCRDEMLTSKASSAFIFETARQEVM 837
            +  F+ DSLDRE + +YF  QA+TMRI+D+YIREGAP  + +S  CRDE+L++  ++  IF+ AR EV+
Sbjct:  274 LVDFYLDSLDREEIMEYFARQAATMRIVDQYIREGAPDQVNISGECRDEILSTHVTAYDIFDRARAEVL 342          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14195.3255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LNX7_ECTSI4.270e-23989.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGZ4_9PHAE3.680e-13559.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSY8_9PHAE5.530e-4637.02G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
D8LNY0_ECTSI1.050e-4335.38G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
A0A6H5KX62_9PHAE8.130e-3435.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTZ9_ECTSI1.450e-1528.37RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FU00_ECTSI4.290e-1137.10Regulator of G-protein signaling 13 n=1 Tax=Ectoca... [more]
D7FTZ5_ECTSI6.850e-1150.72Signal transducer, putative n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14195contigEcto-sp13_S_contig14195:1613..4482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score84.3
Seed ortholog evalue1.4e-13
Seed eggNOG ortholog2880.D7FU04
Preferred nameRGS1
Model size1188
KEGG koko:K16449
Hectar predicted targeting categorysignal peptide
GOsGO:0001101,GO:0003674,GO:0004888,GO:0004930,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005886,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0008047,GO:0008150,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010182,GO:0012505,GO:0016020,GO:0023052,GO:0030234,GO:0030695,GO:0031090,GO:0031410,GO:0031982,GO:0033993,GO:0034284,GO:0038023,GO:0042127,GO:0042221,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051336,GO:0051345,GO:0051716,GO:0060089,GO:0060589,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071322,GO:0071944,GO:0097305,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901700,GO:1901701
Exons5
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2CNEE@1,2QVMV@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_005440.1
Cds size1188
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462758.136657-CDS-Ecto-sp13_S_contig14195:1612..18971681462758.136657-CDS-Ecto-sp13_S_contig14195:1612..1897Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14195 1613..1897 +
1681462758.1476362-CDS-Ecto-sp13_S_contig14195:2312..25331681462758.1476362-CDS-Ecto-sp13_S_contig14195:2312..2533Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14195 2313..2533 +
1681462758.1571305-CDS-Ecto-sp13_S_contig14195:3023..32101681462758.1571305-CDS-Ecto-sp13_S_contig14195:3023..3210Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14195 3024..3210 +
1681462758.169204-CDS-Ecto-sp13_S_contig14195:3627..38041681462758.169204-CDS-Ecto-sp13_S_contig14195:3627..3804Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14195 3628..3804 +
1681462758.191026-CDS-Ecto-sp13_S_contig14195:4164..44821681462758.191026-CDS-Ecto-sp13_S_contig14195:4164..4482Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14195 4165..4482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14195.3255.1prot_Ecto-sp13_S_contig14195.3255.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14195 1613..4482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14195.3255.1

>prot_Ecto-sp13_S_contig14195.3255.1 ID=prot_Ecto-sp13_S_contig14195.3255.1|Name=mRNA_Ecto-sp13_S_contig14195.3255.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=396bp
MFTCAFLRVYRSHSVLLWHKGLMWSIPLQLGITIMPFVLTPAALNSGADA
LVFDEETNECERDSEMPEAIAVGFMALLTVATAALTCRLQAVRIQAPEES
SAAVSTTVVVLAATLGLPALHEGLEAERDERRRAMLVASSLTSLAIVAPP
LWGAVTSFVLARDHEVVASGEFGLFRAHQPGDLQKITQDRMKVETLASSP
EGRDMPESLAMTSFFSDSLDRECLRDYFLLQASTMRILDRYIREGAPVSI
PLSSCCRDEMLTSKASSAFIFETARQEVMARMGGGGLNYRISPSDTFAFG
KGVVGDKVGENSSGLGTPSSLPPSPPNPNPQQQQQQQQQKLPPGAFPAKA
QPTRRTKTAGRAAVSGGEIKRHGLGILGGRTSDLLAVFGLRPDGKL
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mRNA from alignment at Ecto-sp13_S_contig14195:1613..4482+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14195.3255.1 ID=mRNA_Ecto-sp13_S_contig14195.3255.1|Name=mRNA_Ecto-sp13_S_contig14195.3255.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2870bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14195:1613..4482+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTACGTGCGCGTTCCTCCGGGTGTACAGGAGCCACAGCGTTCTCCT CTGGCACAAAGGCTTGATGTGGTCAATCCCTCTTCAGCTGGGCATCACGA TCATGCCTTTCGTCTTGACGCCAGCAGCTCTCAACTCGGGCGCGGACGCT TTGGTTTTCGACGAAGAAACGAACGAGTGCGAACGGGACTCCGAAATGCC GGAGGCCATTGCGGTTGGGTTCATGGCACTTCTCACCGTCGCTACCGCCG CCCTGACGTGCCGGCTGCAGGCAGTACGTATTCAGGTGATCGGCGTATTC GAGCGCAAGTGTTTGTTCCGGCATTCTCACCTGCGGGGGAGCTCCACCTG TTTGGCCTCGTTTCTCATCTCGCACTTGGATGTTGTATCATGGAAAGTTC GCAGTGTGCGGAGGCACACGAAAGCCGTCATACGCATTTGACGGCATCGT TGCCGTCATTGTTTTTTCCTGCTGTAGCTGCGCCCTCAAGGTTTTCGGGA ATATGTATTATCGATGTGCCAATGACCAACTGCGCGCGTACTCAACGTCC GTTCCGCTTCACGGAAAAGCTCGGGCTACCTCTCATGGAACGACGCGTGT CCCTCTCCCTACATTCTGCGAATCAGCGCTCACGATGCCCTGCATGAACC CCTTCTCCCCACCGACAATTCCATGTGGACGGATCGCCACTTCCTACAAG GCACCGGAGGAGTCTAGCGCGGCTGTGTCAACGACCGTCGTCGTCCTTGC GGCCACCCTCGGGCTGCCCGCTCTCCATGAGGGTCTGGAAGCGGAAAGGG ATGAACGTCGGAGGGCGATGCTCGTGGCCTCGTCGCTCACCTCCTTGGCG ATTGTCGCCCCTCCTTTGTGGGGTGCTGTAACGTCCTTCGTTTTAGCTCG CGATCACGAAGTGGTGGCCAGGTGAACACGCAACGATACAACTTAAGTGT GTAGAGGTTGCTCTGAAACGTGCCGGTTGTTAAGTCTAGATTGAACGTTG AAGGCGCACGGAGCAGTAGACCACGAACAATCCTCCCATACAGTACACCG TTGGAAACGATTTTGGCTTCAATCCATGCGGTTTGTATGCAAGAAATTTT GAAGTGGTTGTGATGATTGTTTCTGCGAGGAGTCAGGGAAGATTACAAAC CTAAGCGAGGGGATTAGTTGTTGACTTAGGAGAAGTGCCGTCGATGATTT CGATTTTTCGCCTGTCGAGTGTTGATCGCCCATTGACCACAAGGGGACGA TCAGCTGGCAGCATCCTCCCCCTCAATCCCCACCGTCCCTCTCTGTCTGT GATATATGTCTGTCTATCTATCTATTTTGCCTACCCGCCTGTCTCTCTCT GTCTGTCTTTCTGTCGCCCTGTCTCGGCCCCTGTTTCGGGTTGCCCATCC TCCCTAAGCAGCGGTGAGTTCGGGTTATTTAGGGCCCATCAGCCAGGAGA TCTCCAAAAGATAACTCAGGACAGGATGAAAGTGGAAACCCTTGCGAGTT CCCCAGAAGGACGGGACATGCCGGAGTCCTTGGCGATGACATCGTTCTTC AGTGATTCGCTTGACCGAGAATGTCTTCGAGACTACTTCTTGCTTCAGGT GAAATACAAGGGCCATATTTCGCAACAGTGCTTGTTTCGATGAGGCTTCT GGAAACGGATTGTTCTTGCTGGAGAGTGGTGCTGCTCCTGGAGGAAGATG CATATCACCAAGTCGAAGTACTGGACTGTTGGCGCTTTGCACTTATGTGG GCTCTTGCGCGCCACCTTAGTCAGCGCCCGCTTGAGTACACGGTGTTCAC GATGCGGTTGCAGCCGACTGCCGCAGGGTTGCATGCAAGTGATCTCCGCA TAAACAAATGGTCAACAAGCGAGACAAACGGCTGGACTACGAGTTCCCCA CGACTCTCTCTTCCTGCTCTCCTCCCGCCTGTGCATCAAGCGACCTTTAT TTTTCACGCTATTCCCACGGGTGATGGTTGAGCAATATGAACCTGCCTGT CTTGGCTCCGTGCAGGCCTCGACCATGAGGATTCTAGACCGGTACATCCG AGAAGGAGCACCCGTGTCCATCCCTCTGTCCTCCTGCTGCAGAGACGAAA TGTTGACGTCGAAGGCCTCCTCCGCCTTCATCTTCGAAACGGCCCGTCAG GAGGTCATGGCACGAATGGGAGGGGGTGGGCTCAACTACCGCGTGAGTAG GCCCACAAACAATCGCTTTTTAGTCTTCTTTGGCTGTTTCCATCTCGGAA AAGTGTGATGATGTTGACGGTGTCGCCTGACTGTGCCTGCGTTGAAGAAC GGACCCTTGTGCTCCTTCGAGCAAAAGTCGCGTCCCATGAACGTCGATTG TATCTCTATACCCGCGGCCCCTGCGGCAAAACGAAAAATCGAAAGTGCCC TCCTGGGACGGTAAATCCCAGCTTGTTATTATGTGTTCACGACAATGCCC CGCTTGCCCTTCAATGCCGTGTCATTTGCGCGTTTCATTTGAACGCCCAT TGGTCTCTCCTTCACCTGTGGACCACGTACTCCCGTCCTACCTCCCCTGA AGATATCACCTTCAGATACCTTCGCTTTCGGCAAAGGAGTGGTTGGGGAC AAGGTCGGCGAGAACAGCAGTGGCCTTGGCACGCCATCTTCACTCCCGCC ATCCCCTCCAAACCCCAACCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGA AGCTCCCTCCAGGAGCGTTTCCGGCCAAGGCTCAACCGACCCGCAGAACG AAGACCGCCGGAAGGGCGGCGGTTTCGGGAGGGGAAATCAAGAGGCACGG GCTTGGGATTCTCGGCGGCAGAACCTCGGATTTGTTGGCTGTGTTCGGCC TCCGGCCCGACGGCAAACTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14195:1613..4482+

>mRNA_Ecto-sp13_S_contig14195.3255.1 ID=mRNA_Ecto-sp13_S_contig14195.3255.1|Name=mRNA_Ecto-sp13_S_contig14195.3255.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1188bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14195:1613..4482+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTACGTGCGCGTTCCTCCGGGTGTACAGGAGCCACAGCGTTCTCCT
CTGGCACAAAGGCTTGATGTGGTCAATCCCTCTTCAGCTGGGCATCACGA
TCATGCCTTTCGTCTTGACGCCAGCAGCTCTCAACTCGGGCGCGGACGCT
TTGGTTTTCGACGAAGAAACGAACGAGTGCGAACGGGACTCCGAAATGCC
GGAGGCCATTGCGGTTGGGTTCATGGCACTTCTCACCGTCGCTACCGCCG
CCCTGACGTGCCGGCTGCAGGCAGTACGTATTCAGGCACCGGAGGAGTCT
AGCGCGGCTGTGTCAACGACCGTCGTCGTCCTTGCGGCCACCCTCGGGCT
GCCCGCTCTCCATGAGGGTCTGGAAGCGGAAAGGGATGAACGTCGGAGGG
CGATGCTCGTGGCCTCGTCGCTCACCTCCTTGGCGATTGTCGCCCCTCCT
TTGTGGGGTGCTGTAACGTCCTTCGTTTTAGCTCGCGATCACGAAGTGGT
GGCCAGCGGTGAGTTCGGGTTATTTAGGGCCCATCAGCCAGGAGATCTCC
AAAAGATAACTCAGGACAGGATGAAAGTGGAAACCCTTGCGAGTTCCCCA
GAAGGACGGGACATGCCGGAGTCCTTGGCGATGACATCGTTCTTCAGTGA
TTCGCTTGACCGAGAATGTCTTCGAGACTACTTCTTGCTTCAGGCCTCGA
CCATGAGGATTCTAGACCGGTACATCCGAGAAGGAGCACCCGTGTCCATC
CCTCTGTCCTCCTGCTGCAGAGACGAAATGTTGACGTCGAAGGCCTCCTC
CGCCTTCATCTTCGAAACGGCCCGTCAGGAGGTCATGGCACGAATGGGAG
GGGGTGGGCTCAACTACCGCATATCACCTTCAGATACCTTCGCTTTCGGC
AAAGGAGTGGTTGGGGACAAGGTCGGCGAGAACAGCAGTGGCCTTGGCAC
GCCATCTTCACTCCCGCCATCCCCTCCAAACCCCAACCCGCAGCAGCAGC
AGCAGCAGCAGCAGCAGAAGCTCCCTCCAGGAGCGTTTCCGGCCAAGGCT
CAACCGACCCGCAGAACGAAGACCGCCGGAAGGGCGGCGGTTTCGGGAGG
GGAAATCAAGAGGCACGGGCTTGGGATTCTCGGCGGCAGAACCTCGGATT
TGTTGGCTGTGTTCGGCCTCCGGCCCGACGGCAAACTC
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