mRNA_Ecto-sp13_S_contig14189.3250.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14189.3250.1
Unique NamemRNA_Ecto-sp13_S_contig14189.3250.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14189.3250.1 vs. uniprot
Match: A0A6H5JU13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU13_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 6.050e-33
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 3 
Query:    3 YETPRGTYIHGRGLTPDIRGGLPLKMISTTFDFDQEQFDLARKKMKACPPMEASRLELKGAAGASSSSL 209
            YETPRGTYIHGRGLTPDIRGGLP KM+STTFDFDQEQFDLARKKMKACPPMEASRLELKGAAG SSSSL
Sbjct:  478 YETPRGTYIHGRGLTPDIRGGLPPKMMSTTFDFDQEQFDLARKKMKACPPMEASRLELKGAAGVSSSSL 546
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BLAST of mRNA_Ecto-sp13_S_contig14189.3250.1 vs. uniprot
Match: D8LLB8_ECTSI (TSPc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLB8_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 5.260e-26
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 3 
Query:   33 GRGLTPDIRGGLPLKMISTTFDFDQEQFDLARKKMKACPPMEASRLELKGAAGASSSSL 209
            GRGLTPDIRGGLPLKM+STTFDFDQEQFDLARKKMKACPPMEASRLELKGAAGASSSSL
Sbjct: 1302 GRGLTPDIRGGLPLKMVSTTFDFDQEQFDLARKKMKACPPMEASRLELKGAAGASSSSL 1360
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14189.3250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JU13_9PHAE6.050e-3395.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLB8_ECTSI5.260e-2698.31TSPc domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14189contigEcto-sp13_S_contig14189:2149..4211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score86.3
Seed ortholog evalue4.1e-15
Seed eggNOG ortholog2880.D8LLB8
Model size1157
KEGG koko:K03797
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009579,GO:0016787,GO:0019538,GO:0031977,GO:0043170,GO:0044238,GO:0044424,GO:0044436,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564
Exons2
EggNOG free text desc.serine-type peptidase activity
EggNOG OGs2QT7D@2759,COG0793@1
EC3.4.21.102
Cds size135
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462757.567619-UTR-Ecto-sp13_S_contig14189:2148..30931681462757.567619-UTR-Ecto-sp13_S_contig14189:2148..3093Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14189 2149..3093 -
1681462757.6285517-UTR-Ecto-sp13_S_contig14189:3228..32731681462757.6285517-UTR-Ecto-sp13_S_contig14189:3228..3273Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14189 3229..3273 -
1681462757.641655-UTR-Ecto-sp13_S_contig14189:4179..42111681462757.641655-UTR-Ecto-sp13_S_contig14189:4179..4211Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14189 4180..4211 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462757.6124272-CDS-Ecto-sp13_S_contig14189:3093..32281681462757.6124272-CDS-Ecto-sp13_S_contig14189:3093..3228Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14189 3094..3228 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14189.3250.1prot_Ecto-sp13_S_contig14189.3250.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14189 3094..3228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14189.3250.1

>prot_Ecto-sp13_S_contig14189.3250.1 ID=prot_Ecto-sp13_S_contig14189.3250.1|Name=mRNA_Ecto-sp13_S_contig14189.3250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
MISTTFDFDQEQFDLARKKMKACPPMEASRLELKGAAGASSSSL*
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mRNA from alignment at Ecto-sp13_S_contig14189:2149..4211-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14189.3250.1 ID=mRNA_Ecto-sp13_S_contig14189.3250.1|Name=mRNA_Ecto-sp13_S_contig14189.3250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2063bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14189:2149..4211- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTACGAGACTCCGAGGGGTACCTACATCCATGTGCGTCCGTTTCTGGCA
ATCCGTTCTCTGTTGTTGCTGGTTTTGCTGATCCTGATCCTGACACTGTT
GCTGCTCTCGCTCGCGATTTGTTTTTGTTGCGAACTCTTCGCTCGGGTGG
TGTGTCGGTGGTCGGCCCACGGGGCTTCCAAGCCCGCGAAGTATTTTTCT
GTTGGCGGCCAATGGTTGACGACGTACATAGTTGTAGTTGTGCCTCTCCC
TCCTTGAGGGAGCTAGCTACCTTAGACGGCAAAAAACGTTCTTGGTTTGT
GGACGAGCGAGCATCCAGATACGGAGTGGAGGTCATGTTCTTGTTCGTGA
ACGTGGCACCAAGGGACACTCGATACGTCGCCTTCCAGCAGCCGCATATG
CGTGCTCATCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCC
CCCCGGAACGAAAAAAAAACCACCCAACAAAAAGAAAAGAGCAGCCCCGC
CCGCCCCCCGANNNNNNNNNNGAGCTTTTTCTTGTTGTGGAAGCGGCGCC
CACGGGAACTCCTTCACCTCTCCTCCAAAAGCCCCCTTTTGCGGCCTCTC
CCCCCCCCCCCCCCCCAACTCTCCTTCCTTCCCTCCGCGGAAGGCGCATG
ATCAGATCACGGCAGGAAGTACAGTAGTGCTCATGCGAAGTCCGCCTCAC
GAGCGATTTTGGTGTAGAGGTTACCCTACGTACAACGCGCTTGACGTCGA
ATTGGGTGCGATTGGCAGCCTGGTGGGGAAACTCAACGTGCCGTGTCCCA
GATTAGTCCGGCCACAAGGGAGATGAGGGTCTGTCGCTGAAAGACCACGT
CCAAGCGTGGTTCTGAGTCCCACCCCCCGTGACGGTGCTCTTCCCGCCCC
GTGTGTTTCCGTCCTCTCTGGCTCCAACACACCATCAGGGGAGAGGCCTC
ACACCGGACATTCGCGGGGGGCTTCCGCTGAAGATGATCAGCACGACCTT
CGACTTCGACCAAGAGCAGTTTGACTTGGCTCGCAAGAAGATGAAGGCGT
GCCCTCCCATGGAAGCGAGCAGACTTGAACTCAAGGGAGCTGCGGGAGCC
TCTTCGTCATCCTTGTGATGGTGCTCGGATGGCGGCCCGCACACACTCTC
CTGATAGTTTTTTTTTATGGTGAATGCGGTAGACCTCTTTTGCCCGTTCT
TCGGTGTGTATGGACTCGGACTCGGAACGACATCCAGTCGGCTCCACCCA
ACGTAAATTCGTGTCGTGCCTGGTTAAGTCTCACGGGCAATTTTGTGATA
TTGAAGCGTGCGAAGCTGCGGTTTATTGGTGTATGAGCGGCAGGTTGGCA
AAGTCACCGCACCATTCTCTAGCCTAGCTTTTAGAATGAAGTGCCGAAAA
TCGCAACAATATAATACTTCAGTGAAGATCCTCGGCGAGGGTACAACTGG
CTAGACGGGTATTTTAAACTATTCGTTGTAAAATGGGGTGGACGATAAAA
CTTAAAGTGTCGCGTGAAGCAGAGCCAACAAAACACCAGCATAGCGCGAC
GCATGCACAGACGATCTCGGAAGGAGCGTGGCGCCACTGCTGGTGATGTA
GACTTTGTAGTCTAGACAGCACGGGTAAGGTTAGTCGTCAGCGCAATGTG
TTTGAGCCTGCTCTACTGTAGCGCTACGTAGTTAGCAAGAAGTTGGGGCA
GTCGGGTGGGCTGCGACGTCATGCACACCGTGACTTCGTGTGGTGTCCTC
TGGGTGTAGCCAGAGCACACACGCCTCACCAACCGTTCCACGCCGCCTTC
GCGTGAGCTCCTGCATAACTCCGCTTTATTTTTTGTTTTTTGTGAAGTAT
CCGGCACTTCTCTCCATCTCCGATGCACGCGCGAAGAGCGCTCAAGTGCA
TACACCTCAGCATATGTGGTATTTCTGTTGTGTATGAAGAGATTGGGGGA
ATGTGCTAATGTGTGGCTTTGGTGTGCATGCAGGGGACAGAGAAAGAGCA
TCAGAAATACAAGCACATGTTGGCACATGTTCATCTTCATCATGACATGG
ATTTGCCCGCGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14189:2149..4211-

>mRNA_Ecto-sp13_S_contig14189.3250.1 ID=mRNA_Ecto-sp13_S_contig14189.3250.1|Name=mRNA_Ecto-sp13_S_contig14189.3250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14189:2149..4211- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCAGCACGACCTTCGACTTCGACCAAGAGCAGTTTGACTTGGCTCG
CAAGAAGATGAAGGCGTGCCCTCCCATGGAAGCGAGCAGACTTGAACTCA
AGGGAGCTGCGGGAGCCTCTTCGTCATCCTTGTGA
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