mRNA_Ecto-sp13_S_contig14189.3249.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14189.3249.1
Unique NamemRNA_Ecto-sp13_S_contig14189.3249.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14189.3249.1 vs. uniprot
Match: A0A6H5JTW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTW3_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.120e-21
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 ETFSGRRGAEWAGWECRFSGADGRPVAVPEDYVPESLREWDV 126
            E FSGRRGAEWAGWECRFSGADGRPVAVPEDYVPESLREWDV
Sbjct:   60 EAFSGRRGAEWAGWECRFSGADGRPVAVPEDYVPESLREWDV 101
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BLAST of mRNA_Ecto-sp13_S_contig14189.3249.1 vs. uniprot
Match: A0A836C8Z5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Z5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.190e-10
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   28 EWAGWECRFSGADGRPVAVPEDYVPESLREWDV 126
            EWAGWECRFS   G+ +++PEDY+PESLREWDV
Sbjct:   51 EWAGWECRFSQVSGQRMSIPEDYIPESLREWDV 83
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BLAST of mRNA_Ecto-sp13_S_contig14189.3249.1 vs. uniprot
Match: A0A7J7IK16_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IK16_9RHOD)

HSP 1 Score: 49.3 bits (116), Expect = 2.440e-5
Identity = 19/42 (45.24%), Postives = 27/42 (64.29%), Query Frame = 1 
Query:    1 ETFSGRRGAEWAGWECRFSGADGRPVAVPEDYVPESLREWDV 126
            E F+ R G E+ G+E  F G  G P+ VPE +VP+  R+W+V
Sbjct:   15 EQFASRSGGEFVGFEAHFDGKTGAPIEVPERFVPQEYRDWNV 56
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14189.3249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JTW3_9PHAE2.120e-2197.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C8Z5_9STRA1.190e-1072.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7J7IK16_9RHOD2.440e-545.24Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14189contigEcto-sp13_S_contig14189:317..490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size174
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462757.538441-CDS-Ecto-sp13_S_contig14189:316..4901681462757.538441-CDS-Ecto-sp13_S_contig14189:316..490Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14189 317..490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14189.3249.1prot_Ecto-sp13_S_contig14189.3249.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14189 317..490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14189.3249.1

>prot_Ecto-sp13_S_contig14189.3249.1 ID=prot_Ecto-sp13_S_contig14189.3249.1|Name=mRNA_Ecto-sp13_S_contig14189.3249.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
ETFSGRRGAEWAGWECRFSGADGRPVAVPEDYVPESLREWDVEASKLSSL
FVLLWLV*
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mRNA from alignment at Ecto-sp13_S_contig14189:317..490-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14189.3249.1 ID=mRNA_Ecto-sp13_S_contig14189.3249.1|Name=mRNA_Ecto-sp13_S_contig14189.3249.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14189:317..490- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGACGTTCTCGGGGAGGCGGGGCGCAGAGTGGGCAGGGTGGGAGTGCCG
GTTTTCTGGGGCGGACGGGAGGCCTGTCGCCGTTCCGGAGGACTACGTGC
CCGAGTCGCTTCGGGAGTGGGACGTGGAGGCAAGCAAGCTCTCCTCCCTG
TTTGTATTGCTGTGGCTTGTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14189:317..490-

>mRNA_Ecto-sp13_S_contig14189.3249.1 ID=mRNA_Ecto-sp13_S_contig14189.3249.1|Name=mRNA_Ecto-sp13_S_contig14189.3249.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14189:317..490- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGACGTTCTCGGGGAGGCGGGGCGCAGAGTGGGCAGGGTGGGAGTGCCG
GTTTTCTGGGGCGGACGGGAGGCCTGTCGCCGTTCCGGAGGACTACGTGC
CCGAGTCGCTTCGGGAGTGGGACGTGGAGGCAAGCAAGCTCTCCTCCCTG
TTTGTATTGCTGTGGCTTGTTTGA
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