mRNA_Ecto-sp13_S_contig14186.3247.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14186.3247.1
Unique NamemRNA_Ecto-sp13_S_contig14186.3247.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14186.3247.1 vs. uniprot
Match: A0A6H5JXW2_9PHAE (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXW2_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 8.000e-26
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    1 QYKRYTFMHNGGIPGFARMKRQLLAQLGDEAYLAVEGSTDSELCFAYFLDEL 156
            +YKRYTFMHNGGIPGFARMKRQLLAQLGDEAYL +EGSTDSELCFAYFLDEL
Sbjct:  105 KYKRYTFMHNGGIPGFARMKRQLLAQLGDEAYLTIEGSTDSELCFAYFLDEL 156
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BLAST of mRNA_Ecto-sp13_S_contig14186.3247.1 vs. uniprot
Match: D8LKF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF2_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.340e-25
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    1 QYKRYTFMHNGGIPGFARMKRQLLAQLGDEAYLAVEGSTDSELCFAYFLDEL 156
            +YKRYTFMHNGGIPGFARMKRQLLAQLGD AYLAVEGSTDSELCFAYFLDEL
Sbjct:  111 KYKRYTFMHNGGIPGFARMKRQLLAQLGDAAYLAVEGSTDSELCFAYFLDEL 162
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BLAST of mRNA_Ecto-sp13_S_contig14186.3247.1 vs. uniprot
Match: A0A0H5R783_9EUKA (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R783_9EUKA)

HSP 1 Score: 69.7 bits (169), Expect = 9.440e-13
Identity = 31/49 (63.27%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:   10 RYTFMHNGGIPGFARMKRQLLAQLGDEAYLAVEGSTDSELCFAYFLDEL 156
            RY FMHNG I  F+++KR+L+A LGD+A+  +EG+TDSE CFA FLDEL
Sbjct:  118 RYMFMHNGHIAEFSKLKRKLVASLGDKAFQIIEGTTDSEHCFAVFLDEL 166
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BLAST of mRNA_Ecto-sp13_S_contig14186.3247.1 vs. uniprot
Match: C5DD08_LACTC (KLTH0B07348p n=2 Tax=Lachancea TaxID=300275 RepID=C5DD08_LACTC)

HSP 1 Score: 66.2 bits (160), Expect = 1.960e-11
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    4 YKRYTFMHNGGIPGFARMKRQLLAQLGDEAYLAVEGSTDSELCFAYFLDEL 156
            Y   TFMHNGGI  F ++KR+LLA +GDE +  ++GSTDSE  FA FLD L
Sbjct:  113 YHNITFMHNGGIGNFTKIKRRLLAHIGDEYFNLIQGSTDSECAFALFLDTL 163
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BLAST of mRNA_Ecto-sp13_S_contig14186.3247.1 vs. uniprot
Match: A0A0G4J6N8_PLABS (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J6N8_PLABS)

HSP 1 Score: 65.9 bits (159), Expect = 1.960e-11
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   10 RYTFMHNGGIPGFARMKRQLLAQLGDEAYLAVEGSTDSELCFAYFLDEL 156
            RY FMHNG I  F ++KR+L+A L DE +  +EG+TDSE CFA F+DEL
Sbjct:   92 RYMFMHNGHIAQFGKLKRKLVASLTDECFAIIEGTTDSEHCFAVFMDEL 140
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BLAST of mRNA_Ecto-sp13_S_contig14186.3247.1 vs. uniprot
Match: A0A3P3Y5S0_PLABS (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y5S0_PLABS)

HSP 1 Score: 65.9 bits (159), Expect = 2.290e-11
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   10 RYTFMHNGGIPGFARMKRQLLAQLGDEAYLAVEGSTDSELCFAYFLDEL 156
            RY FMHNG I  F ++KR+L+A L DE +  +EG+TDSE CFA F+DEL
Sbjct:  118 RYMFMHNGHIAQFGKLKRKLVASLTDECFAIIEGTTDSEHCFAVFMDEL 166
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BLAST of mRNA_Ecto-sp13_S_contig14186.3247.1 vs. uniprot
Match: A0A7S2XX38_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX38_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.630e-11
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   10 RYTFMHNGGIPGFARMKRQLLAQLGDEAYLAVEGSTDSELCFAYFLDEL 156
            RYTFMHNGG+P F R++R +L Q  DE + ++EG+TDSE  F  FL+EL
Sbjct:   43 RYTFMHNGGVPSFTRIRRNMLRQFRDEVFDSMEGTTDSEHIFGLFLNEL 91
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BLAST of mRNA_Ecto-sp13_S_contig14186.3247.1 vs. uniprot
Match: A0A1E3NXK0_WICAA (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Wickerhamomyces anomalus (strain ATCC 58044 / CBS 1984 / NCYC 433 / NRRL Y-366-8) TaxID=683960 RepID=A0A1E3NXK0_WICAA)

HSP 1 Score: 65.5 bits (158), Expect = 3.050e-11
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    4 YKRYTFMHNGGIPGFARMKRQLLAQLGDEAYLAVEGSTDSELCFAYFLDEL 156
            Y    FMHNGGI GF ++KR+L+A + DE ++ ++GSTDSE CFA FLD L
Sbjct:   70 YHSLMFMHNGGISGFDKIKRKLVAHMKDEYFIFLQGSTDSECCFALFLDTL 120
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14186.3247.1 vs. uniprot
Match: A0A1D2VJ37_9ASCO (N-terminal nucleophile aminohydrolase n=1 Tax=Ascoidea rubescens DSM 1968 TaxID=1344418 RepID=A0A1D2VJ37_9ASCO)

HSP 1 Score: 65.5 bits (158), Expect = 3.710e-11
Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   19 FMHNGGIPGFARMKRQLLAQLGDEAYLAVEGSTDSELCFAYFLDEL 156
            FMHNGGI  F ++KR++LA L DE +L ++GSTDSE+CFA FLD L
Sbjct:  117 FMHNGGISNFNKIKRRILAHLKDEYFLFIQGSTDSEVCFALFLDTL 162
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14186.3247.1 vs. uniprot
Match: A0A1G4JQV3_9SACH (LAFA_0F14928g1_1 n=5 Tax=Lachancea TaxID=300275 RepID=A0A1G4JQV3_9SACH)

HSP 1 Score: 64.7 bits (156), Expect = 6.970e-11
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    4 YKRYTFMHNGGIPGFARMKRQLLAQLGDEAYLAVEGSTDSELCFAYFLDEL 156
            Y R TFMHNGGI  F ++KR+ LA L DE +  ++GSTDSE  FA FLD L
Sbjct:  113 YHRITFMHNGGISNFLKIKRRFLAHLDDEYFNLIQGSTDSECAFALFLDTL 163
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14186.3247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXW2_9PHAE8.000e-2694.23Glutamine amidotransferase type-2 domain-containin... [more]
D8LKF2_ECTSI1.340e-2596.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0H5R783_9EUKA9.440e-1363.27Glutamine amidotransferase type-2 domain-containin... [more]
C5DD08_LACTC1.960e-1158.82KLTH0B07348p n=2 Tax=Lachancea TaxID=300275 RepID=... [more]
A0A0G4J6N8_PLABS1.960e-1159.18Glutamine amidotransferase type-2 domain-containin... [more]
A0A3P3Y5S0_PLABS2.290e-1159.18Glutamine amidotransferase type-2 domain-containin... [more]
A0A7S2XX38_9STRA2.630e-1157.14Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1E3NXK0_WICAA3.050e-1156.86Glutamine amidotransferase type-2 domain-containin... [more]
A0A1D2VJ37_9ASCO3.710e-1163.04N-terminal nucleophile aminohydrolase n=1 Tax=Asco... [more]
A0A1G4JQV3_9SACH6.970e-1158.82LAFA_0F14928g1_1 n=5 Tax=Lachancea TaxID=300275 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14186contigEcto-sp13_S_contig14186:284..1083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score92.8
Seed ortholog evalue4.3e-17
Seed eggNOG ortholog2880.D8LKF2
Preferred nameDUG3
Model size156
KEGG rclassRC00408
KEGG koko:K01836,ko:K14262,ko:K18802
KEGG ReactionR08193
KEGG Pathwayko00520,ko01100,ko01130,map00520,map01100,map01130
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004044,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006518,GO:0006575,GO:0006749,GO:0006751,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008242,GO:0009056,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0016787,GO:0019538,GO:0032991,GO:0034641,GO:0042219,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044273,GO:0044424,GO:0044464,GO:0051186,GO:0051187,GO:0061672,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368
Exons2
EggNOG free text desc.glutamine-fructose-6-phosphate transaminase (isomerizing) activity
EggNOG OGsCOG0449@1,KOG1268@2759
EC5.4.2.3
Cds size135
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462757.4109714-UTR-Ecto-sp13_S_contig14186:283..3041681462757.4109714-UTR-Ecto-sp13_S_contig14186:283..304Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14186 284..304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462757.420942-CDS-Ecto-sp13_S_contig14186:304..4091681462757.420942-CDS-Ecto-sp13_S_contig14186:304..409Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14186 305..409 +
1681462757.4311488-CDS-Ecto-sp13_S_contig14186:1053..10831681462757.4311488-CDS-Ecto-sp13_S_contig14186:1053..1083Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14186 1054..1083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14186.3247.1prot_Ecto-sp13_S_contig14186.3247.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14186 305..1083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14186.3247.1

>prot_Ecto-sp13_S_contig14186.3247.1 ID=prot_Ecto-sp13_S_contig14186.3247.1|Name=mRNA_Ecto-sp13_S_contig14186.3247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
MHNGGIPGFARMKRQLLAQLGDEAYLAVEGSTDSELCFAYFLDEL
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mRNA from alignment at Ecto-sp13_S_contig14186:284..1083+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14186.3247.1 ID=mRNA_Ecto-sp13_S_contig14186.3247.1|Name=mRNA_Ecto-sp13_S_contig14186.3247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=800bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14186:284..1083+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTACAAGCGCTACACATTCATGCACAACGGAGGCATCCCCGGGTTTGC
GAGGATGAAGCGCCAGCTGCTTGCTCAGCTCGGGGACGAGGCCTACCTGG
CCGTCGAGGGCAGCACGGATTCGGAGGTGAAGAACAGCAAACACCGCTTC
TTCTAGGTCAACGGCCCGCTTCTTTTATGTTCTTTCCCTGTCAGGTGTTT
CTTGATTTACTTTTCTCCAACCGGCGCTCCGGTAGACGCGGCCAATATCA
TGGGTTTGCTTCGTATTCTCATTTCATACCCTGTCCATGAATGTTTTCGC
CACAACGATGAGTTCTGAAGCTTGTTGCCGGGTTTGGTGTTCCCAACGAC
AGTTGCGTTTGTGTCAAAAAGGAAAACACTTGTTGTTGGACGGCGGAAGG
CACGTGGTTTCAAGAAGCCGGTGCCGGTGGAAAGATACCGCGAAGAGCCT
AGAGCGATCGCTTCGTTTGAGGCATCAAGCATCGGGGCATTTTACAGCGC
AAGCTGTTGCAGACCGCGATAAAGCGCTCTCGACCACCGTTGCTGCTACT
GCCGGCAAACATCCGGATCAAGACGGAGGAGGAACTCCCTCGGTGGTCGC
TTTTTACGGAGATCGATTTGTCAAGTGCTCTTTTTGCTGTGTTATGTGTG
TGCTGTCTTGACCATCTTGCGTTTTCATTGCTTGCATGCTATTGGCTTTC
CTGTTCCTTCATCCCCTCTCTGAATATTGTTTCGCATGGTCCACTTCTTT
CGTTTTCTGGGCGCGTACAGCTCTGCTTCGCCTATTTCTTGGATGAGCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14186:284..1083+

>mRNA_Ecto-sp13_S_contig14186.3247.1 ID=mRNA_Ecto-sp13_S_contig14186.3247.1|Name=mRNA_Ecto-sp13_S_contig14186.3247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14186:284..1083+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACAACGGAGGCATCCCCGGGTTTGCGAGGATGAAGCGCCAGCTGCT
TGCTCAGCTCGGGGACGAGGCCTACCTGGCCGTCGAGGGCAGCACGGATT
CGGAGCTCTGCTTCGCCTATTTCTTGGATGAGCTG
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