mRNA_Ecto-sp13_S_contig14180.3246.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14180.3246.1
Unique NamemRNA_Ecto-sp13_S_contig14180.3246.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14180.3246.1 vs. uniprot
Match: D7FPS7_ECTSI (Phosphoserine phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS7_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 2.140e-32
Identity = 63/87 (72.41%), Postives = 66/87 (75.86%), Query Frame = 1
Query:    7 GSPAPIGRLSKEFGYKCIVMVGDGATDMQASLPRYIVFDLNTPQAKPPAEAFIGYGGVTVRKSVRKGADWFVTDFGPLIEALRDSEN 267
            G    I  LSKEFGYKC+VMVGDGATDMQA               KPPA+AFIGYGGVTVRKSVRKGADWFVTDFGPLIEALRDSE+
Sbjct:  222 GKAKVIDLLSKEFGYKCVVMVGDGATDMQA---------------KPPADAFIGYGGVTVRKSVRKGADWFVTDFGPLIEALRDSES 293          
BLAST of mRNA_Ecto-sp13_S_contig14180.3246.1 vs. uniprot
Match: A0A7S3Z9N4_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z9N4_9EUKA)

HSP 1 Score: 84.7 bits (208), Expect = 6.250e-19
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 RAGSPAPIGRLSKEF-GYKCIVMVGDGATDMQASLPRYIVFDLNTPQAKPPAEAFIGYGGVTVRKSVRKGADWFVTDFGPLIEAL 252
            RAG  A    L KE  GY+ +VM+GDGATDM+A               +PPA+AFIGYGGV  R++V+KGADWFVTDF  L++AL
Sbjct:   83 RAGGKAKAVALLKETKGYETVVMIGDGATDMEA---------------RPPADAFIGYGGVVEREAVKKGADWFVTDFKDLVDAL 152          
BLAST of mRNA_Ecto-sp13_S_contig14180.3246.1 vs. uniprot
Match: A0A835ZG36_9STRA (Phosphoserine phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG36_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.140e-18
Identity = 43/83 (51.81%), Postives = 52/83 (62.65%), Query Frame = 1
Query:    7 GSPAPIGRLSKEFGYKCIVMVGDGATDMQASLPRYIVFDLNTPQAKPPAEAFIGYGGVTVRKSVRKGADWFVTDFGPLIEALR 255
            G PA +  L  + GY  +VMVGDG TDMQA               +PPAEAFIGYGGV VR +VR+GADW+V DF  +IE +R
Sbjct:  195 GKPAVVKALKAQHGYAPVVMVGDGVTDMQA---------------RPPAEAFIGYGGVAVRDAVRRGADWYVYDFQDMIEVVR 262          
BLAST of mRNA_Ecto-sp13_S_contig14180.3246.1 vs. uniprot
Match: A0A7S0D1D2_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D1D2_9EUKA)

HSP 1 Score: 84.0 bits (206), Expect = 4.170e-18
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    1 RAGSPAPI-GRLSKEFGYKCIVMVGDGATDMQASLPRYIVFDLNTPQAKPPAEAFIGYGGVTVRKSVRKGADWFVTDFGPLIEALR 255
            RAG  A + G L +   YK IVM+GDGATDM+A               +PPA+AFIGYGG+ VR +V++GADWFVTDF  LI  ++
Sbjct:  135 RAGGKARVVGMLKETMKYKSIVMIGDGATDMEA---------------RPPADAFIGYGGIAVRAAVKEGADWFVTDFNDLINVVK 205          
BLAST of mRNA_Ecto-sp13_S_contig14180.3246.1 vs. uniprot
Match: A0A6G0XPX3_9STRA (Phosphoserine phosphatase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPX3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.560e-18
Identity = 43/82 (52.44%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    7 GSPAPIGRLSKEFGYKCIVMVGDGATDMQASLPRYIVFDLNTPQAKPPAEAFIGYGGVTVRKSVRKGADWFVTDFGPLIEAL 252
            G P  +  L KE GYK +VM+GDGATDMQA               KPPA+ F+G+GGV  R  VR  ADWFVTDF  L+EAL
Sbjct:  178 GKPRVLELLKKEHGYKTMVMIGDGATDMQA---------------KPPADLFVGFGGVVARDIVRANADWFVTDFQELVEAL 244          
BLAST of mRNA_Ecto-sp13_S_contig14180.3246.1 vs. uniprot
Match: UPI000B4596BF (phosphoserine phosphatase-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B4596BF)

HSP 1 Score: 82.4 bits (202), Expect = 8.940e-18
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    7 GSPAPIGRLSKEFGYKCIVMVGDGATDMQASLPRYIVFDLNTPQAKPPAEAFIGYGGVTVRKSVRKGADWFVTDFGPLIEALRDSEN 267
            G    + RL  +FGYK +VM+GDGATDM+AS               PPA+AFIGYGG  VR+ V +GA WFV DF  LI+ ++D+ +
Sbjct:  106 GKKVVVQRLKDKFGYKNLVMIGDGATDMEAS---------------PPADAFIGYGGNVVREKVAQGAHWFVKDFQELIQEIKDARS 177          
BLAST of mRNA_Ecto-sp13_S_contig14180.3246.1 vs. uniprot
Match: A0A1V9ZE00_9STRA (Phosphoserine phosphatase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZE00_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.650e-17
Identity = 45/82 (54.88%), Postives = 48/82 (58.54%), Query Frame = 1
Query:    7 GSPAPIGRLSKEFGYKCIVMVGDGATDMQASLPRYIVFDLNTPQAKPPAEAFIGYGGVTVRKSVRKGADWFVTDFGPLIEAL 252
            G P  I  L KE GYK +VMVGDGATDMQA               KPPA+ FIG+GGV  R  V K ADWFV DF  LIE L
Sbjct:  176 GKPRVIELLKKERGYKTVVMVGDGATDMQA---------------KPPADLFIGFGGVVARDVVEKHADWFVRDFNDLIEGL 242          
BLAST of mRNA_Ecto-sp13_S_contig14180.3246.1 vs. uniprot
Match: UPI0014589F41 (phosphoserine phosphatase-like isoform X1 n=2 Tax=Pecten maximus TaxID=6579 RepID=UPI0014589F41)

HSP 1 Score: 84.7 bits (208), Expect = 1.810e-17
Identity = 44/87 (50.57%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    7 GSPAPIGRLSKEFGYKCIVMVGDGATDMQASLPRYIVFDLNTPQAKPPAEAFIGYGGVTVRKSVRKGADWFVTDFGPLIEALRDSEN 267
            G    + RL ++FGYK +VM+GDGATDM+A                PPA+AFIGYGG  VR+ V+KGA WFVTDF  LI  L  +EN
Sbjct:  294 GKKVVVQRLKEKFGYKNLVMIGDGATDMEAC---------------PPADAFIGYGGNVVREKVQKGAVWFVTDFQELIWELNSTEN 365          
BLAST of mRNA_Ecto-sp13_S_contig14180.3246.1 vs. uniprot
Match: A0A2A2KF96_9BILA (Phosphoserine phosphatase n=1 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2KF96_9BILA)

HSP 1 Score: 83.2 bits (204), Expect = 1.820e-17
Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = 1
Query:    7 GSPAPIGRLSKEFGYKCIVMVGDGATDMQASLPRYIVFDLNTPQAKPPAEAFIGYGGVTVRKSVRKGADWFVTDFGPLIEAL 252
            G PA I  L K FGYK IVM+GDGATD++A                PPA+AFIG+GG  +R+SV+ G+DWFVTDF  L   L
Sbjct:  184 GKPAVIAHLKKTFGYKNIVMIGDGATDLEAC---------------PPADAFIGFGGNQIRESVKNGSDWFVTDFNVLRREL 250          
BLAST of mRNA_Ecto-sp13_S_contig14180.3246.1 vs. uniprot
Match: UPI001E277349 (phosphoserine phosphatase n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E277349)

HSP 1 Score: 82.0 bits (201), Expect = 3.010e-17
Identity = 44/85 (51.76%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 RAGSPAPIGRLSKE-FGYKCIVMVGDGATDMQASLPRYIVFDLNTPQAKPPAEAFIGYGGVTVRKSVRKGADWFVTDFGPLIEAL 252
            R+G  A + R+ KE FGY+ +VMVGDGATD++AS               PPA+AFIGYGG  VR+SV+K A WFVTDF  +I+ L
Sbjct:  151 RSGGKAEVVRILKEKFGYQNLVMVGDGATDLEAS---------------PPADAFIGYGGNVVRESVKKNARWFVTDFQEIIQVL 220          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14180.3246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPS7_ECTSI2.140e-3272.41Phosphoserine phosphatase n=1 Tax=Ectocarpus silic... [more]
A0A7S3Z9N4_9EUKA6.250e-1952.94Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A835ZG36_9STRA3.140e-1851.81Phosphoserine phosphatase n=1 Tax=Tribonema minus ... [more]
A0A7S0D1D2_9EUKA4.170e-1850.00Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A6G0XPX3_9STRA4.560e-1852.44Phosphoserine phosphatase n=1 Tax=Aphanomyces eute... [more]
UPI000B4596BF8.940e-1847.13phosphoserine phosphatase-like n=1 Tax=Mizuhopecte... [more]
A0A1V9ZE00_9STRA1.650e-1754.88Phosphoserine phosphatase n=1 Tax=Achlya hypogyna ... [more]
UPI0014589F411.810e-1750.57phosphoserine phosphatase-like isoform X1 n=2 Tax=... [more]
A0A2A2KF96_9BILA1.820e-1751.22Phosphoserine phosphatase n=1 Tax=Diploscapter pac... [more]
UPI001E2773493.010e-1751.76phosphoserine phosphatase n=1 Tax=Harmonia axyridi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14180contigEcto-sp13_S_contig14180:2799..3279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score122.1
Seed ortholog evalue1.3e-25
Seed eggNOG ortholog2880.D7FPS7
Preferred namePSPH
Model size267
KEGG rclassRC00006,RC00017,RC00036
KEGG koko:K00831,ko:K01079
KEGG ReactionR00582,R04173,R05085
KEGG Pathwayko00260,ko00680,ko00750,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map00750,map01100,map01120,map01130,map01200,map01230
KEGG ModuleM00020,M00124
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000287,GO:0000902,GO:0000904,GO:0003674,GO:0003824,GO:0004647,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0006935,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007422,GO:0007610,GO:0007617,GO:0007618,GO:0007619,GO:0008049,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009987,GO:0009991,GO:0010033,GO:0014070,GO:0016043,GO:0016053,GO:0016311,GO:0016545,GO:0016787,GO:0016788,GO:0016791,GO:0019098,GO:0019752,GO:0019953,GO:0022008,GO:0022414,GO:0030030,GO:0030154,GO:0030182,GO:0030534,GO:0031175,GO:0031667,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032990,GO:0033574,GO:0033993,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042578,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045433,GO:0045471,GO:0046394,GO:0046677,GO:0046872,GO:0046983,GO:0048065,GO:0048149,GO:0048468,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050896,GO:0051704,GO:0060179,GO:0061564,GO:0071704,GO:0071840,GO:0097305,GO:0097458,GO:0097485,GO:0120025,GO:0120036,GO:0120039,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901654,GO:1901700
Exons2
EggNOG free text desc.phosphoserine phosphatase activity
EggNOG OGsCOG0560@1,KOG1615@2759
EC2.6.1.52,3.1.3.3
Cds size267
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462757.3766363-CDS-Ecto-sp13_S_contig14180:2798..29651681462757.3766363-CDS-Ecto-sp13_S_contig14180:2798..2965Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14180 2799..2965 -
1681462757.3867514-CDS-Ecto-sp13_S_contig14180:3179..32791681462757.3867514-CDS-Ecto-sp13_S_contig14180:3179..3279Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14180 3180..3279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14180.3246.1prot_Ecto-sp13_S_contig14180.3246.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14180 2799..3279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14180.3246.1

>prot_Ecto-sp13_S_contig14180.3246.1 ID=prot_Ecto-sp13_S_contig14180.3246.1|Name=mRNA_Ecto-sp13_S_contig14180.3246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
RAGSPAPIGRLSKEFGYKCIVMVGDGATDMQASLPRYIVFDLNTPQAKPP
AEAFIGYGGVTVRKSVRKGADWFVTDFGPLIEALRDSEN
back to top

mRNA from alignment at Ecto-sp13_S_contig14180:2799..3279-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14180.3246.1 ID=mRNA_Ecto-sp13_S_contig14180.3246.1|Name=mRNA_Ecto-sp13_S_contig14180.3246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=481bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14180:2799..3279- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGCGGGCTCTCCTGCACCAATCGGCAGGCTGTCGAAGGAGTTCGGCTA TAAGTGCATCGTCATGGTAGGGGACGGGGCGACCGACATGCAGGCGAGCC GTAGCTGTGCGTGCTGACTTTTTTTTTTTCGCTCACCCAAATGAAGTCTT CTCTGTTTTGGACACTCGGTTTCAGTTTTGGGCATTTTTCCTGTAGGTGT TGGTTATCGGGGAAGAGGATTAAGAATCCGGATAAACAATCCGTGAAGGA ATCTGAGTCAGTGCGAGGCGGGGCTTTGGGCCAAATTTCTGCTCTCGTGG GAAAAAGCTGATAGTCCCCCGATATATCGTGTTTGATTTGAATACACCGC AGGCGAAACCCCCGGCGGAGGCGTTCATCGGGTACGGAGGAGTAACGGTT CGCAAATCGGTGCGAAAGGGCGCCGACTGGTTCGTCACGGACTTCGGCCC TCTGATAGAAGCCCTGAGGGATAGCGAGAAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14180:2799..3279-

>mRNA_Ecto-sp13_S_contig14180.3246.1 ID=mRNA_Ecto-sp13_S_contig14180.3246.1|Name=mRNA_Ecto-sp13_S_contig14180.3246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14180:2799..3279- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGCGGGCTCTCCTGCACCAATCGGCAGGCTGTCGAAGGAGTTCGGCTA
TAAGTGCATCGTCATGGTAGGGGACGGGGCGACCGACATGCAGGCGAGCC
TCCCCCGATATATCGTGTTTGATTTGAATACACCGCAGGCGAAACCCCCG
GCGGAGGCGTTCATCGGGTACGGAGGAGTAACGGTTCGCAAATCGGTGCG
AAAGGGCGCCGACTGGTTCGTCACGGACTTCGGCCCTCTGATAGAAGCCC
TGAGGGATAGCGAGAAC
back to top