prot_Ecto-sp13_S_contig14175.3245.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14175.3245.1
Unique Nameprot_Ecto-sp13_S_contig14175.3245.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length105
Homology
BLAST of mRNA_Ecto-sp13_S_contig14175.3245.1 vs. uniprot
Match: A0A6H5JNN2_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN2_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 5.340e-66
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0
Query:    1 MENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAAMCRPLFVVENNRLRIRKKHINDLHGPNYGWTNLM 105
            MENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAAMCRPLFVVENNRLRIRKKHINDLH PNYGWTNLM
Sbjct:   22 MENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAAMCRPLFVVENNRLRIRKKHINDLHDPNYGWTNLM 126          
BLAST of mRNA_Ecto-sp13_S_contig14175.3245.1 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 2.580e-61
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 0
Query:    1 MENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVENNRLRIRKKHINDLHGPNYGWTNLM 105
            MENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDA  +CRPLFVVENNRLRIRKKHINDLH PNYGWTNLM
Sbjct:  641 MENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVENNRLRIRKKHINDLHDPNYGWTNLM 746          
BLAST of mRNA_Ecto-sp13_S_contig14175.3245.1 vs. uniprot
Match: A0A835YQ41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ41_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.490e-40
Identity = 74/107 (69.16%), Postives = 89/107 (83.18%), Query Frame = 0
Query:    2 ENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVENNRLRIRKKHINDL--HGPNYGWTNLM 105
            ENL+EI+P  IA+  CTK+FVNGNW+G+HR+PN+LV+TLV QRR LDID EVSVVRDIK RELRLYTDA  +CRPLFVV+NN+L IRK HI+DL  +   Y WT+LM
Sbjct:  553 ENLEEISPSTIAEKQCTKIFVNGNWIGIHREPNQLVRTLVIQRRCLDIDAEVSVVRDIKERELRLYTDAGRICRPLFVVQNNKLVIRKSHIHDLVSNPEEYNWTSLM 659          
BLAST of mRNA_Ecto-sp13_S_contig14175.3245.1 vs. uniprot
Match: A0A2N9QM37_9AGAR (DNA-directed RNA polymerase (Fragment) n=9 Tax=Entolomataceae TaxID=71934 RepID=A0A2N9QM37_9AGAR)

HSP 1 Score: 115 bits (288), Expect = 2.510e-30
Identity = 62/112 (55.36%), Postives = 79/112 (70.54%), Query Frame = 0
Query:    1 MENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVENNRLRIRKKHIN------DLHGPNYGWTNLM 105
            +E+L+E A    +QT CTKVFVNG W+GVHRDP  LV+T+   RR  DI  EVSVVRDI+ +ELRLYTDA  +CRPLF+VEN +L ++KKH+       D  G +Y W NL+
Sbjct:   30 LESLEENAH---SQTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALQKKHVRWLSEGRDDEGEDYKWDNLV 138          
BLAST of mRNA_Ecto-sp13_S_contig14175.3245.1 vs. uniprot
Match: F0YIN3_AURAN (DNA-directed RNA polymerase subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIN3_AURAN)

HSP 1 Score: 122 bits (306), Expect = 3.600e-30
Identity = 62/109 (56.88%), Postives = 75/109 (68.81%), Query Frame = 0
Query:    1 MENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVEN---NRLRIRKKHINDLHGPNYGWTNLM 105
            MENL+EI+P  IA    TK+FVNG+WVGVHRDP+ L  TL   RR +DID EVSVVRDIK +ELR+YTDA  +CRPL ++       LR+RK HI  L     GWT L+
Sbjct:  499 MENLEEISPQTIADPGTTKIFVNGSWVGVHRDPSTLESTLRSLRRQIDIDPEVSVVRDIKEKELRIYTDAGRVCRPLLIISKFSRQELRLRKSHIQKLVNGELGWTQLL 607          
BLAST of mRNA_Ecto-sp13_S_contig14175.3245.1 vs. uniprot
Match: A0A6M8NXD4_9FUNG (DNA-directed RNA polymerase (Fragment) n=3 Tax=Pygmaeomyces TaxID=2824127 RepID=A0A6M8NXD4_9FUNG)

HSP 1 Score: 115 bits (289), Expect = 4.570e-30
Identity = 57/108 (52.78%), Postives = 78/108 (72.22%), Query Frame = 0
Query:    1 MENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAAMC-RPLFVVENNRLRIRKKHINDLHGP--NYGWTNLM 105
            MENL+E++ + I   + TK+FVNG WVG+HRDP  L+ +L   RR++DI  EVS+VRDI+ +ELR+YTDA  C RPLF+VEN +L++ K H+  L  P  NY W NL+
Sbjct:   52 MENLEELSANNIP--DATKIFVNGVWVGIHRDPGDLITSLKQMRRSVDISPEVSIVRDIREKELRMYTDAGRCCRPLFIVENQQLKLTKDHVAQLADPEANYRWQNLI 157          
BLAST of mRNA_Ecto-sp13_S_contig14175.3245.1 vs. uniprot
Match: A0A0F6WBC6_9APHY (DNA-directed RNA polymerase (Fragment) n=1 Tax=Scopuloides sp. FP-102935-Sp TaxID=1648348 RepID=A0A0F6WBC6_9APHY)

HSP 1 Score: 115 bits (287), Expect = 4.740e-30
Identity = 61/106 (57.55%), Postives = 76/106 (71.70%), Query Frame = 0
Query:    1 MENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVENNRLRIRKKHINDLHGPNYGWTNLM 105
            +E+L+E A    + T CTKVFVNG W+GVHRDP  LV+T+   RR  DI  EVSVVRDI+ RELRLYTDA  +CRPLF+VEN +L I KKHIN ++  +  W  L+
Sbjct:   18 LESLEENAH---SSTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVIAKKHINQINEKSLKWDELI 120          
BLAST of mRNA_Ecto-sp13_S_contig14175.3245.1 vs. uniprot
Match: A0A3S8FSL3_9AGAR (DNA-directed RNA polymerase (Fragment) n=1 Tax=Inocephalus mucronatus TaxID=2487844 RepID=A0A3S8FSL3_9AGAR)

HSP 1 Score: 114 bits (284), Expect = 5.260e-30
Identity = 63/112 (56.25%), Postives = 78/112 (69.64%), Query Frame = 0
Query:    1 MENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVENNRLRIRKKHINDL------HGPNYGWTNLM 105
            +E+L+E A    +QT CTKVFVNG W+GVHRDP  LV+T+   RR  DI  EVSVVRDI+ +ELRLYTDA  +CRPLF+VEN +L ++KKHI  L       G  Y W NL+
Sbjct:   32 LESLEENAH---SQTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALQKKHIKWLSEGFNDEGEPYKWENLV 140          
BLAST of mRNA_Ecto-sp13_S_contig14175.3245.1 vs. uniprot
Match: A0A288WHH6_9APHY (DNA-directed RNA polymerase (Fragment) n=5 Tax=Polyporaceae TaxID=5317 RepID=A0A288WHH6_9APHY)

HSP 1 Score: 115 bits (288), Expect = 5.990e-30
Identity = 66/112 (58.93%), Postives = 79/112 (70.54%), Query Frame = 0
Query:    1 MENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVENNRLRIRKKHINDL----HGP--NYGWTNLM 105
            +E+L+E A    A T CTKVFVNG W+GVHRDP +LV TL   RR  DI+ EVSVVRDI+ RELRLYTDA  +CRPLF+VEN +L I+KKHI  L      P  NY W +L+
Sbjct:   31 LESLEENAH---ASTPCTKVFVNGVWMGVHRDPVKLVSTLRKLRRKDDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLIQKKHIESLVRSKDDPTINYNWDSLL 139          
BLAST of mRNA_Ecto-sp13_S_contig14175.3245.1 vs. uniprot
Match: F0WJN8_9STRA (DNA-directed RNA polymerase subunit beta n=4 Tax=Oomycota TaxID=4762 RepID=F0WJN8_9STRA)

HSP 1 Score: 121 bits (304), Expect = 6.720e-30
Identity = 61/108 (56.48%), Postives = 79/108 (73.15%), Query Frame = 0
Query:    2 ENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVENNRLRIRKKHINDLHG---PNYGWTNLM 105
            ENL+EI P +I  +  TK+FVNGNWVGVHR+PN LV+TL   RR +DID EVSV+RD+  RELR+YTDA  +CRPLF+VE N+L ++K+ +  L      NY W NL+
Sbjct:  594 ENLEEIKPQIIPHS--TKIFVNGNWVGVHREPNELVRTLRSLRRCVDIDAEVSVIRDLMNRELRIYTDAGRVCRPLFIVEENQLLLQKEQVVKLQNHKITNYRWHNLL 699          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14175.3245.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNN2_9PHAE5.340e-6699.05DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
D7FHZ3_ECTSI2.580e-6196.23DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
A0A835YQ41_9STRA1.490e-4069.16DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A2N9QM37_9AGAR2.510e-3055.36DNA-directed RNA polymerase (Fragment) n=9 Tax=Ent... [more]
F0YIN3_AURAN3.600e-3056.88DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]
A0A6M8NXD4_9FUNG4.570e-3052.78DNA-directed RNA polymerase (Fragment) n=3 Tax=Pyg... [more]
A0A0F6WBC6_9APHY4.740e-3057.55DNA-directed RNA polymerase (Fragment) n=1 Tax=Sco... [more]
A0A3S8FSL3_9AGAR5.260e-3056.25DNA-directed RNA polymerase (Fragment) n=1 Tax=Ino... [more]
A0A288WHH6_9APHY5.990e-3058.93DNA-directed RNA polymerase (Fragment) n=5 Tax=Pol... [more]
F0WJN8_9STRA6.720e-3056.48DNA-directed RNA polymerase subunit beta n=4 Tax=O... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.1070.20coord: 1..69
e-value: 2.5E-26
score: 93.0
NoneNo IPR availablePANTHERPTHR20856:SF23coord: 2..94
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 11..103
IPR007646RNA polymerase Rpb2, domain 4PFAMPF04566RNA_pol_Rpb2_4coord: 20..80
e-value: 1.6E-18
score: 66.8
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 2..94

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14175contigEcto-sp13_S_contig14175:2798..3689 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14175.3245.1mRNA_Ecto-sp13_S_contig14175.3245.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14175 2798..3710 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14175.3245.1 ID=prot_Ecto-sp13_S_contig14175.3245.1|Name=mRNA_Ecto-sp13_S_contig14175.3245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDID
VEVSVVRDIKGRELRLYTDAAMCRPLFVVENNRLRIRKKHINDLHGPNYG
WTNLM
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007646RNA_pol_Rpb2_4
IPR015712DNA-dir_RNA_pol_su2