mRNA_Ecto-sp13_S_contig14175.3245.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14175.3245.1
Unique NamemRNA_Ecto-sp13_S_contig14175.3245.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14175.3245.1 vs. uniprot
Match: A0A6H5JNN2_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN2_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 2.630e-71
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 1 
Query:    1 EFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAAMCRPLFVVENNRLRIRKKHINDLHGPNYGWTNLM 336
            EFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAAMCRPLFVVENNRLRIRKKHINDLH PNYGWTNLM
Sbjct:   15 EFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAAMCRPLFVVENNRLRIRKKHINDLHDPNYGWTNLM 126
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14175.3245.1 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 225 bits (574), Expect = 3.430e-66
Identity = 109/113 (96.46%), Postives = 110/113 (97.35%), Query Frame = 1 
Query:    1 EFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVENNRLRIRKKHINDLHGPNYGWTNLM 336
            EFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDA  +CRPLFVVENNRLRIRKKHINDLH PNYGWTNLM
Sbjct:  634 EFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVENNRLRIRKKHINDLHDPNYGWTNLM 746
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14175.3245.1 vs. uniprot
Match: A0A835YQ41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ41_9STRA)

HSP 1 Score: 166 bits (419), Expect = 2.770e-45
Identity = 81/115 (70.43%), Postives = 96/115 (83.48%), Query Frame = 1 
Query:    1 EFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVENNRLRIRKKHINDL--HGPNYGWTNLM 336
            EFLEEWA ENL+EI+P  IA+  CTK+FVNGNW+G+HR+PN+LV+TLV QRR LDID EVSVVRDIK RELRLYTDA  +CRPLFVV+NN+L IRK HI+DL  +   Y WT+LM
Sbjct:  545 EFLEEWATENLEEISPSTIAEKQCTKIFVNGNWIGIHREPNQLVRTLVIQRRCLDIDAEVSVVRDIKERELRLYTDAGRICRPLFVVQNNKLVIRKSHIHDLVSNPEEYNWTSLM 659
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14175.3245.1 vs. uniprot
Match: A0A2N9QM37_9AGAR (DNA-directed RNA polymerase (Fragment) n=9 Tax=Entolomataceae TaxID=71934 RepID=A0A2N9QM37_9AGAR)

HSP 1 Score: 128 bits (321), Expect = 3.390e-35
Identity = 68/119 (57.14%), Postives = 85/119 (71.43%), Query Frame = 1 
Query:    1 EFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVENNRLRIRKKHIN------DLHGPNYGWTNLM 336
            EFLEEW +E+L+E A    +QT CTKVFVNG W+GVHRDP  LV+T+   RR  DI  EVSVVRDI+ +ELRLYTDA  +CRPLF+VEN +L ++KKH+       D  G +Y W NL+
Sbjct:   23 EFLEEWGLESLEENAH---SQTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALQKKHVRWLSEGRDDEGEDYKWDNLV 138
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14175.3245.1 vs. uniprot
Match: A0A0F6WBC6_9APHY (DNA-directed RNA polymerase (Fragment) n=1 Tax=Scopuloides sp. FP-102935-Sp TaxID=1648348 RepID=A0A0F6WBC6_9APHY)

HSP 1 Score: 127 bits (320), Expect = 6.510e-35
Identity = 67/113 (59.29%), Postives = 82/113 (72.57%), Query Frame = 1 
Query:    1 EFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVENNRLRIRKKHINDLHGPNYGWTNLM 336
            EFLEEW +E+L+E A    + T CTKVFVNG W+GVHRDP  LV+T+   RR  DI  EVSVVRDI+ RELRLYTDA  +CRPLF+VEN +L I KKHIN ++  +  W  L+
Sbjct:   11 EFLEEWGLESLEENAH---SSTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVIAKKHINQINEKSLKWDELI 120
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14175.3245.1 vs. uniprot
Match: A0A6M8NXD4_9FUNG (DNA-directed RNA polymerase (Fragment) n=3 Tax=Pygmaeomyces TaxID=2824127 RepID=A0A6M8NXD4_9FUNG)

HSP 1 Score: 128 bits (322), Expect = 6.520e-35
Identity = 63/114 (55.26%), Postives = 84/114 (73.68%), Query Frame = 1 
Query:    4 FLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAAMC-RPLFVVENNRLRIRKKHINDLHGP--NYGWTNLM 336
            FLEEWAMENL+E++ + I   + TK+FVNG WVG+HRDP  L+ +L   RR++DI  EVS+VRDI+ +ELR+YTDA  C RPLF+VEN +L++ K H+  L  P  NY W NL+
Sbjct:   46 FLEEWAMENLEELSANNIP--DATKIFVNGVWVGIHRDPGDLITSLKQMRRSVDISPEVSIVRDIREKELRMYTDAGRCCRPLFIVENQQLKLTKDHVAQLADPEANYRWQNLI 157
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14175.3245.1 vs. uniprot
Match: A0A1B6IZA9_9HEMI (DNA-directed RNA polymerase (Fragment) n=1 Tax=Homalodisca liturata TaxID=320908 RepID=A0A1B6IZA9_9HEMI)

HSP 1 Score: 127 bits (319), Expect = 6.620e-35
Identity = 66/117 (56.41%), Postives = 87/117 (74.36%), Query Frame = 1 
Query:    1 EFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDV-EVSVVRDIKGRELRLYTDAA-MCRPLFVVENNRLRIRKKHINDLHGP---NYGWTNLM 336
            EFLEEW+MENL+EIAP  IA  + TK+FVNG WVG+HRDP +L+ TL   RR +DI V EVS++RDI+ RE+R+YTDA  +CRPL +VEN +L ++K+H+  L      NYGW  L+
Sbjct:   58 EFLEEWSMENLEEIAPSAIA--DATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKKRHVETLKERDYNNYGWQVLV 172
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14175.3245.1 vs. uniprot
Match: A0A3S8FSL3_9AGAR (DNA-directed RNA polymerase (Fragment) n=1 Tax=Inocephalus mucronatus TaxID=2487844 RepID=A0A3S8FSL3_9AGAR)

HSP 1 Score: 126 bits (317), Expect = 6.930e-35
Identity = 69/119 (57.98%), Postives = 84/119 (70.59%), Query Frame = 1 
Query:    1 EFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVENNRLRIRKKHINDL------HGPNYGWTNLM 336
            EFLEEW +E+L+E A    +QT CTKVFVNG W+GVHRDP  LV+T+   RR  DI  EVSVVRDI+ +ELRLYTDA  +CRPLF+VEN +L ++KKHI  L       G  Y W NL+
Sbjct:   25 EFLEEWGLESLEENAH---SQTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALQKKHIKWLSEGFNDEGEPYKWENLV 140
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14175.3245.1 vs. uniprot
Match: D0ULX3_CTELI (DNA-directed RNA polymerase (Fragment) n=21 Tax=Panarthropoda TaxID=88770 RepID=D0ULX3_CTELI)

HSP 1 Score: 128 bits (322), Expect = 8.440e-35
Identity = 67/117 (57.26%), Postives = 88/117 (75.21%), Query Frame = 1 
Query:    1 EFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDV-EVSVVRDIKGRELRLYTDAA-MCRPLFVVENNRLRIRKKHIN---DLHGPNYGWTNLM 336
            EFLEEW+MENL+EIAP  IA  + TK+FVNG WVG+HRDP +L+ TL   RR +DI V EVS++RDI+ RE+R+YTDA  +CRPL +VEN +L ++K+HI+   D    NYGW  L+
Sbjct:   84 EFLEEWSMENLEEIAPSAIA--DATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGKLLLKKRHIDMLKDREYNNYGWQVLV 198
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14175.3245.1 vs. uniprot
Match: A0A288WHH6_9APHY (DNA-directed RNA polymerase (Fragment) n=5 Tax=Polyporaceae TaxID=5317 RepID=A0A288WHH6_9APHY)

HSP 1 Score: 128 bits (321), Expect = 8.530e-35
Identity = 72/119 (60.50%), Postives = 85/119 (71.43%), Query Frame = 1 
Query:    1 EFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAA-MCRPLFVVENNRLRIRKKHINDL----HGP--NYGWTNLM 336
            EFLEEW +E+L+E A    A T CTKVFVNG W+GVHRDP +LV TL   RR  DI+ EVSVVRDI+ RELRLYTDA  +CRPLF+VEN +L I+KKHI  L      P  NY W +L+
Sbjct:   24 EFLEEWGLESLEENAH---ASTPCTKVFVNGVWMGVHRDPVKLVSTLRKLRRKDDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLIQKKHIESLVRSKDDPTINYNWDSLL 139
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14175.3245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNN2_9PHAE2.630e-7199.11DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
D7FHZ3_ECTSI3.430e-6696.46DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
A0A835YQ41_9STRA2.770e-4570.43DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A2N9QM37_9AGAR3.390e-3557.14DNA-directed RNA polymerase (Fragment) n=9 Tax=Ent... [more]
A0A0F6WBC6_9APHY6.510e-3559.29DNA-directed RNA polymerase (Fragment) n=1 Tax=Sco... [more]
A0A6M8NXD4_9FUNG6.520e-3555.26DNA-directed RNA polymerase (Fragment) n=3 Tax=Pyg... [more]
A0A1B6IZA9_9HEMI6.620e-3556.41DNA-directed RNA polymerase (Fragment) n=1 Tax=Hom... [more]
A0A3S8FSL3_9AGAR6.930e-3557.98DNA-directed RNA polymerase (Fragment) n=1 Tax=Ino... [more]
D0ULX3_CTELI8.440e-3557.26DNA-directed RNA polymerase (Fragment) n=21 Tax=Pa... [more]
A0A288WHH6_9APHY8.530e-3560.50DNA-directed RNA polymerase (Fragment) n=5 Tax=Pol... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14175contigEcto-sp13_S_contig14175:2798..3710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score212.2
Seed ortholog evalue1.1e-52
Seed eggNOG ortholog2880.D7FHZ3
Preferred nameRPB2
Model size336
KEGG rclassRC02795
KEGG koko:K03010
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0016070,GO:0016441,GO:0016458,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0030880,GO:0031047,GO:0031050,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0035195,GO:0035196,GO:0035770,GO:0036464,GO:0040029,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048519,GO:0050789,GO:0050896,GO:0051716,GO:0055029,GO:0055044,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070887,GO:0070918,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901698,GO:1901699,GO:1902494,GO:1990234,GO:1990904
Exons2
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0085@1,KOG0214@2759
EC2.7.7.6
Cds size315
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462757.3134716-CDS-Ecto-sp13_S_contig14175:2797..28981681462757.3134716-CDS-Ecto-sp13_S_contig14175:2797..2898Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14175 2798..2898 -
1681462757.3258417-CDS-Ecto-sp13_S_contig14175:3475..36891681462757.3258417-CDS-Ecto-sp13_S_contig14175:3475..3689Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14175 3476..3689 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462757.3410313-UTR-Ecto-sp13_S_contig14175:3689..37101681462757.3410313-UTR-Ecto-sp13_S_contig14175:3689..3710Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14175 3690..3710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14175.3245.1prot_Ecto-sp13_S_contig14175.3245.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14175 2798..3689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14175.3245.1

>prot_Ecto-sp13_S_contig14175.3245.1 ID=prot_Ecto-sp13_S_contig14175.3245.1|Name=mRNA_Ecto-sp13_S_contig14175.3245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDID
VEVSVVRDIKGRELRLYTDAAMCRPLFVVENNRLRIRKKHINDLHGPNYG
WTNLM
back to top

mRNA from alignment at Ecto-sp13_S_contig14175:2798..3710-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14175.3245.1 ID=mRNA_Ecto-sp13_S_contig14175.3245.1|Name=mRNA_Ecto-sp13_S_contig14175.3245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=913bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14175:2798..3710- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGTTCCTGGAGGAGTGGGCCATGGAGAACCTCGACGAGATCGCGCCGCA
CATGATCGCGCAGACCAACTGCACCAAGGTGTTCGTGAACGGGAACTGGG
TGGGCGTGCACCGCGACCCCAACCGGCTGGTGCAGACGCTGGTGCACCAG
AGACGGGCGCTGGACATCGACGTCGAGGTGTCCGTGGTCAGGGACATCAA
GGGCAGGGAGCTCCGACTCTACACGGACGCGGCGAGTTTTCTACCGTATG
CGTATGCACATGCGGTATTCTTTGCTGTTGTTTTTTGCAAATATACGTTC
AGCTACAGAAAGACTTACGTTCGAGATATAACCGCAGCAGTCGAAGCGGA
TGCGGTCAAGTTTTTTTTTCTGTACTTTTTCTATTTGTTCTGTCAACAAA
GTATCTACGAAGCAGTTGGTAGTGTAGTTGCCCTGGGGCGGTCGTGTGCG
TTGGGTGGGGTTTTTGATTGGCCTATCGCTGTTGCTGGGACCTGTTTTGG
ACGGCGAACGAGGCACAAGAGCTCACGCTTCTCGGCACGCCGGGGGATCG
ACAGCTAATGCGTCGTCGCCCCACCCCAATCAAGCCCATTTTTGTTTTTT
GCATCGCGTACAAGAAGTTTTCCCCAGAAAGATCCGTCTGTGTTTGCTCC
TCCCCCACAACTTTATTCGGTGGGCGACCGATCTTATCCTGCTATGCTGC
CGACTGTTTTGGGACGCGCGCGCTGGTGTGTTTCCCTGTACCTTGCTGAA
CTCCGAACGCCTCTTTTCATTTTGTTCTTGTTCCTTGTTTGTCGTCGTCC
TGCAGGGGCGAGTGTGCCGACCGCTGTTTGTGGTGGAGAACAACCGCCTC
CGCATCCGCAAGAAGCACATCAACGACCTGCACGGCCCCAACTACGGCTG
GACGAACCTCATG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14175:2798..3710-

>mRNA_Ecto-sp13_S_contig14175.3245.1 ID=mRNA_Ecto-sp13_S_contig14175.3245.1|Name=mRNA_Ecto-sp13_S_contig14175.3245.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14175:2798..3710- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGAACCTCGACGAGATCGCGCCGCACATGATCGCGCAGACCAACTG
CACCAAGGTGTTCGTGAACGGGAACTGGGTGGGCGTGCACCGCGACCCCA
ACCGGCTGGTGCAGACGCTGGTGCACCAGAGACGGGCGCTGGACATCGAC
GTCGAGGTGTCCGTGGTCAGGGACATCAAGGGCAGGGAGCTCCGACTCTA
CACGGACGCGGCGATGTGCCGACCGCTGTTTGTGGTGGAGAACAACCGCC
TCCGCATCCGCAAGAAGCACATCAACGACCTGCACGGCCCCAACTACGGC
TGGACGAACCTCATG
back to top