mRNA_Ecto-sp13_S_contig14171.3244.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14171.3244.1
Unique NamemRNA_Ecto-sp13_S_contig14171.3244.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14171.3244.1 vs. uniprot
Match: D7FSZ0_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSZ0_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.740e-7
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -2 
Query:  255 QCSEPRQAVLALTHEATNRWMKEEQV 332
            QCSEPRQAVLALTHEATNRWMKEEQV
Sbjct:  280 QCSEPRQAVLALTHEATNRWMKEEQV 305
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14171.3244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSZ0_ECTSI1.740e-7100.00PPM-type phosphatase domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14171contigEcto-sp13_S_contig14171:765..1097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size334
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462757.2865999-CDS-Ecto-sp13_S_contig14171:764..10971681462757.2865999-CDS-Ecto-sp13_S_contig14171:764..1097Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14171 765..1097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14171.3244.1prot_Ecto-sp13_S_contig14171.3244.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14171 765..1097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14171.3244.1

>prot_Ecto-sp13_S_contig14171.3244.1 ID=prot_Ecto-sp13_S_contig14171.3244.1|Name=mRNA_Ecto-sp13_S_contig14171.3244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
MSHPTPEAHLERINKIVKYSNRSGMCPANRPAIFRRTGPNQSTECLGCPA
CAQQFHRRCTGPTAPFNRRYEGPTTVTVMMTDRRFTCSSFIQRFVASCVR
ASTACRGSEHC
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mRNA from alignment at Ecto-sp13_S_contig14171:765..1097+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14171.3244.1 ID=mRNA_Ecto-sp13_S_contig14171.3244.1|Name=mRNA_Ecto-sp13_S_contig14171.3244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14171:765..1097+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCCACCCCACTCCAGAGGCGCACCTTGAAAGAATCAATAAAATCGT
AAAATACAGTAATAGGTCCGGTATGTGCCCAGCGAATCGACCGGCGATAT
TCAGAAGGACCGGCCCCAATCAAAGTACAGAATGCCTTGGGTGTCCAGCC
TGTGCCCAACAGTTTCACCGCCGCTGTACAGGGCCAACGGCACCATTCAA
CCGGCGCTATGAAGGGCCCACTACCGTGACAGTAATGATGACAGATCGTC
GTTTCACCTGCTCTTCTTTCATCCAGCGGTTTGTAGCCTCGTGCGTCAGG
GCCAGCACCGCTTGCCGCGGTTCTGAGCACTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14171:765..1097+

>mRNA_Ecto-sp13_S_contig14171.3244.1 ID=mRNA_Ecto-sp13_S_contig14171.3244.1|Name=mRNA_Ecto-sp13_S_contig14171.3244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14171:765..1097+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCCACCCCACTCCAGAGGCGCACCTTGAAAGAATCAATAAAATCGT
AAAATACAGTAATAGGTCCGGTATGTGCCCAGCGAATCGACCGGCGATAT
TCAGAAGGACCGGCCCCAATCAAAGTACAGAATGCCTTGGGTGTCCAGCC
TGTGCCCAACAGTTTCACCGCCGCTGTACAGGGCCAACGGCACCATTCAA
CCGGCGCTATGAAGGGCCCACTACCGTGACAGTAATGATGACAGATCGTC
GTTTCACCTGCTCTTCTTTCATCCAGCGGTTTGTAGCCTCGTGCGTCAGG
GCCAGCACCGCTTGCCGCGGTTCTGAGCACTGC
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