mRNA_Ecto-sp13_S_contig1417.3243.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1417.3243.1 vs. uniprot
Match: A0A6H5L1Z1_9PHAE (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1Z1_9PHAE) HSP 1 Score: 244 bits (622), Expect = 6.920e-76 Identity = 117/124 (94.35%), Postives = 121/124 (97.58%), Query Frame = 1
Query: 4 VTYVNKAGEEVASADVPVDRYIYFATEDAGVDVPIINKKRMCRNGCCTTCAVKVLEGK--VKQEGALGLLKDLKQEGYALTCCSYPKSDLVVRLQEEDDVYMKQFGNDFEGGGVEWGGVFLDED 369
VTYVNKAGEEVASADVPVDRYI+FATEDAGVDVPIINKKRMCRNGCCTTCAVKVLEGK VKQEGALGLLK+L+QEGYALTCCSYPKSDLVV+LQEEDDVYMKQFGNDFEGGGVEWGG FLDED
Sbjct: 112 VTYVNKAGEEVASADVPVDRYIFFATEDAGVDVPIINKKRMCRNGCCTTCAVKVLEGKARVKQEGALGLLKNLRQEGYALTCCSYPKSDLVVQLQEEDDVYMKQFGNDFEGGGVEWGGFFLDED 235
BLAST of mRNA_Ecto-sp13_S_contig1417.3243.1 vs. uniprot
Match: A0A835Z8Q8_9STRA (Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Q8_9STRA) HSP 1 Score: 177 bits (449), Expect = 3.000e-50 Identity = 80/123 (65.04%), Postives = 98/123 (79.67%), Query Frame = 1
Query: 1 KVTYVNKAGEEVASADVPVDRYIYFATEDAGVDVPIINKKRMCRNGCCTTCAVKVLEGKVKQEGALGLLKDLKQEGYALTCCSYPKSDLVVRLQEEDDVYMKQFGNDFEGGGVEWGGVFLDED 369
+VT NKAGE VA DVP DRYIYFA ED G D+P+ N +RMCRNGCCTTCA+ V EGKVK EG LGLLKDL+++G+ LTCCSY +D+ ++LQ+ED+VY+KQ+G FE GGVEWGG +ED
Sbjct: 93 QVTIKNKAGEVVAQMDVPDDRYIYFAFEDEGHDLPLQNGRRMCRNGCCTTCAMHVQEGKVKMEGGLGLLKDLRRDGWTLTCCSYATTDVTLQLQDEDEVYLKQWGETFESGGVEWGGFLPEED 215
BLAST of mRNA_Ecto-sp13_S_contig1417.3243.1 vs. uniprot
Match: A0A4D9CSH6_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSH6_9STRA) HSP 1 Score: 174 bits (442), Expect = 3.500e-49 Identity = 80/123 (65.04%), Postives = 100/123 (81.30%), Query Frame = 1
Query: 1 KVTYVNKAGEEVASADVPVDRYIYFATEDAGVDVPIINKKRMCRNGCCTTCAVKVLEGKVKQEGALGLLKDLKQEGYALTCCSYPKSDLVVRLQEEDDVYMKQFGNDFEGGGVEWGGVFLDED 369
KVT V+ + + DVP DRYI+FA ED+GVD+P++N KRMCRNGCCTTCAVK+ EGKVK E ALGLL+D+K +GYAL+CCS P+SD+V LQ+ED+VY++Q+G FE GGVEWGG FL ED
Sbjct: 95 KVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYVRQWGETFESGGVEWGG-FLPED 216
BLAST of mRNA_Ecto-sp13_S_contig1417.3243.1 vs. uniprot
Match: A0A7S2V5A4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5A4_9STRA) HSP 1 Score: 172 bits (437), Expect = 6.100e-48 Identity = 79/115 (68.70%), Postives = 96/115 (83.48%), Query Frame = 1
Query: 25 GEEVASADVPVDRYIYFATEDAGVDVPIINKKRMCRNGCCTTCAVKVLEGKVKQEGALGLLKDLKQEGYALTCCSYPKSDLVVRLQEEDDVYMKQFGNDFEGGGVEWGGVFLDED 369
GEEV DVP DRYIYFA EDAG+++P+INK+R CRNGCCTTCAVK EGK+K + LGLLK++K++GY L CCSYP+SDLVV +Q+ED+VY KQ+G+ FE GGVEWGG FL ED
Sbjct: 143 GEEV-EMDVPADRYIYFAFEDAGIELPLINKERACRNGCCTTCAVKTKEGKMKMDPQLGLLKEMKKQGYGLLCCSYPRSDLVVEVQKEDEVYRKQWGDTFESGGVEWGG-FLPED 255
BLAST of mRNA_Ecto-sp13_S_contig1417.3243.1 vs. uniprot
Match: A0A482T133_9ARCH (2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T133_9ARCH) HSP 1 Score: 156 bits (394), Expect = 2.800e-42 Identity = 71/117 (60.68%), Postives = 87/117 (74.36%), Query Frame = 1
Query: 19 KAGEEVASADVPVDRYIYFATEDAGVDVPIINKKRMCRNGCCTTCAVKVLEGKVKQEGALGLLKDLKQEGYALTCCSYPKSDLVVRLQEEDDVYMKQFGNDFEGGGVEWGGVFLDED 369
K GEE VP DRYIYF E+ GV++PI NK RMCR GCCT C VKV EGKVK + LGLLK+ + +GYAL+CC+YPKSD+V LQ+ED++Y+KQ+ FEGGGV WGGV + D
Sbjct: 86 KTGEEFVQM-VPEDRYIYFYFEEQGVELPIHNKARMCRQGCCTICTVKVSEGKVKMDAPLGLLKEFRNDGYALSCCAYPKSDVVCELQDEDEMYIKQWAEGFEGGGVIWGGVLPEHD 201
BLAST of mRNA_Ecto-sp13_S_contig1417.3243.1 vs. uniprot
Match: A0A7S1ER34_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ER34_9RHOD) HSP 1 Score: 154 bits (388), Expect = 8.240e-42 Identity = 72/123 (58.54%), Postives = 90/123 (73.17%), Query Frame = 1
Query: 1 KVTYVNKAGEEVASADVPVDRYIYFATEDAGVDVPIINKKRMCRNGCCTTCAVKVLEGKVKQEGALGLLKDLKQEGYALTCCSYPKSDLVVRLQEEDDVYMKQFGNDFEGGGVEWGGVFLDED 369
KVT + A S +VPVDRYI+ + E+ G D+P CR+GCCTTCAV++ +G V QE ALGL+K L+++GYAL C SYP+SDLV LQ+ D+VY+KQFGN FE GG EWGGVFLDED
Sbjct: 52 KVTIKDPAKNVTHSVEVPVDRYIWHSMEEQGYDIPA-----SCRHGCCTTCAVRIEQGSVDQEEALGLMKALREQGYALLCVSYPESDLVATLQDADEVYVKQFGNSFESGGKEWGGVFLDED 169
BLAST of mRNA_Ecto-sp13_S_contig1417.3243.1 vs. uniprot
Match: A0A7S3YL42_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YL42_HETAK) HSP 1 Score: 154 bits (388), Expect = 3.750e-41 Identity = 76/127 (59.84%), Postives = 96/127 (75.59%), Query Frame = 1
Query: 1 KVTYVN-KAGEEVASADVPVDRYIYFATEDAGVDVPIINKKR---MCRNGCCTTCAVKVLEGKVKQEGALGLLKDLKQEGYALTCCSYPKSDLVVRLQEEDDVYMKQFGNDFEGGGVEWGGVFLDED 369
KVT N G EV VP+DRYI+F E+ + VPII+ +R MCRNGCCTTCAVKV+EGKVKQ+ +GL+K+L++EGYAL CC+YP+SDLV+ + ED+ Y+KQ+G FE GGVEWGG FL ED
Sbjct: 95 KVTVKNVDEGTEVTHM-VPIDRYIFFQFEEDDIPVPIISGQRGERMCRNGCCTTCAVKVVEGKVKQDAQIGLMKELRKEGYALMCCAYPRSDLVLEVTAEDECYIKQWGESFESGGVEWGG-FLPED 219
BLAST of mRNA_Ecto-sp13_S_contig1417.3243.1 vs. uniprot
Match: A0A5J4YT31_PORPP (Ferredoxin-1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YT31_PORPP) HSP 1 Score: 146 bits (368), Expect = 1.740e-38 Identity = 66/110 (60.00%), Postives = 83/110 (75.45%), Query Frame = 1
Query: 40 SADVPVDRYIYFATEDAGVDVPIINKKRMCRNGCCTTCAVKVLEGKVKQEGALGLLKDLKQEGYALTCCSYPKSDLVVRLQEEDDVYMKQFGNDFEGGGVEWGGVFLDED 369
S VP DRYI+ A E+ G D+P CR+GCCTTCAV++ G V+Q+ ALGLL++++ +GYAL C SYPKSD+V LQ+ED+VY+KQFG FE GG EWGGVFLDED
Sbjct: 94 SVQVPEDRYIWHAMEEQGYDIPA-----SCRHGCCTTCAVRIESGAVQQDQALGLLREMRDQGYALLCVSYPKSDIVATLQDEDEVYIKQFGGTFEQGGKEWGGVFLDED 198
BLAST of mRNA_Ecto-sp13_S_contig1417.3243.1 vs. uniprot
Match: W7TUL4_9STRA (Ferredoxin (2fe-2s) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUL4_9STRA) HSP 1 Score: 144 bits (364), Expect = 1.200e-37 Identity = 65/100 (65.00%), Postives = 82/100 (82.00%), Query Frame = 1
Query: 1 KVTYVNKAGEEVASADVPVDRYIYFATEDAGVDVPIINKKRMCRNGCCTTCAVKVLEGKVKQEGALGLLKDLKQEGYALTCCSYPKSDLVVRLQEEDDVY 300
KVT V+ + + DVP DRYI+FA ED+GVD+P++N KRMCRNGCCTTCAVK+ EGKVK E ALGLL+D+K +GYAL+CCS P+SD+V LQ+ED+VY
Sbjct: 95 KVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVY 194
BLAST of mRNA_Ecto-sp13_S_contig1417.3243.1 vs. uniprot
Match: A0A7S1TD70_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD70_9RHOD) HSP 1 Score: 134 bits (337), Expect = 2.220e-34 Identity = 64/122 (52.46%), Postives = 83/122 (68.03%), Query Frame = 1
Query: 4 VTYVNKAGEEVASADVPVDRYIYFATEDAGVDVPIINKKRMCRNGCCTTCAVKVLEGKVKQEGALGLLKDLKQEGYALTCCSYPKSDLVVRLQEEDDVYMKQFGNDFEGGGVEWGGVFLDED 369
VT + A V VP DRYI++ E+ G D+P CRNGCCTTCA +V G+V Q+ ALGLLK++K +GYAL C SYP+SD+ V LQ+ D+VY +QFG+ FE GGVEWGG +E+
Sbjct: 47 VTVRDPAKNVVYETQVPEDRYIWWEMEEQGFDIPA-----SCRNGCCTTCAGRVTSGEVSQDEALGLLKEIKAQGYALLCVSYPRSDVEVTLQDIDEVYCRQFGDTFEQGGVEWGGFLPEEE 163 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1417.3243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1417.3243.1 >prot_Ecto-sp13_S_contig1417.3243.1 ID=prot_Ecto-sp13_S_contig1417.3243.1|Name=mRNA_Ecto-sp13_S_contig1417.3243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp MCRNGCCTTCAVKVLEGKVKQEGALGLLKDLKQEGYALTCCSYPKSDLVVback to top mRNA from alignment at Ecto-sp13_S_contig1417:12780..14890- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1417.3243.1 ID=mRNA_Ecto-sp13_S_contig1417.3243.1|Name=mRNA_Ecto-sp13_S_contig1417.3243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1417:12780..14890- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1417:12780..14890- >mRNA_Ecto-sp13_S_contig1417.3243.1 ID=mRNA_Ecto-sp13_S_contig1417.3243.1|Name=mRNA_Ecto-sp13_S_contig1417.3243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1417:12780..14890- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |