mRNA_Ecto-sp13_S_contig1417.3242.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1417.3242.1
Unique NamemRNA_Ecto-sp13_S_contig1417.3242.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1417.3242.1 vs. uniprot
Match: A0A6H5KD56_9PHAE (SufE domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD56_9PHAE)

HSP 1 Score: 518 bits (1335), Expect = 4.430e-177
Identity = 292/319 (91.54%), Postives = 301/319 (94.36%), Query Frame = 1
Query:    1 MVARAAILSVALTTSMCSVGEAFVTPNVAVVPGGAFSSHRAAQAXXXXXXXXXXXXXXRSGRD-ATLMSTSTDLKELGLTPELERLTKVFRSCPTDKMRQMQLLHLAQMGDKMDPALQTEENKVLGCLSTVYVAAEVKDGLIYYSTDSDAMITKGLAGLL-AMGLSGNSPEAIQTVKPEFIQVAGLQASLTAGRNNGFINMLRTMKGKALALGGESAIRAAVEQAAPAAEAAAPEEAEQSGTMASRIAEKLQKLEPLKLVIEDESGGEESKFMINIVSKSFEGLTLLKRHRSVYGLMAEEMKIVHAVTLDTKTPEQAGM 951
            MVARAAILSVAL+TS+CSVGE+FVTPNVAVVPGGAFSSHRAAQA        XXXXXXRSGRD A LMSTSTDLK+LGLTPELERLTKVFRSCPTDKMRQMQLLHL QMGDKMDPALQTEENKVLGCLSTVYVAAEVKDGLIYYSTDSDAMITKG A LL AMGLSGNSPEAIQTVKPEFIQVAGLQASL AGRNNGFINMLRTMKGKALALGGESAIRAA+EQAAPAAE AAPEEAE+SGTMASR+ EKLQKLEPLKLVIEDESGGEESKFMI IVSKSFEGLTLLKRHRSVYGLMA+EMKIVHAVTLDTKTPE+AGM
Sbjct:    1 MVARAAILSVALSTSVCSVGESFVTPNVAVVPGGAFSSHRAAQAARSRRPAAXXXXXXRSGRDDAPLMSTSTDLKQLGLTPELERLTKVFRSCPTDKMRQMQLLHLTQMGDKMDPALQTEENKVLGCLSTVYVAAEVKDGLIYYSTDSDAMITKGSARLLLAMGLSGNSPEAIQTVKPEFIQVAGLQASLAAGRNNGFINMLRTMKGKALALGGESAIRAAMEQAAPAAETAAPEEAEESGTMASRVTEKLQKLEPLKLVIEDESGGEESKFMIKIVSKSFEGLTLLKRHRSVYGLMADEMKIVHAVTLDTKTPEEAGM 319          
BLAST of mRNA_Ecto-sp13_S_contig1417.3242.1 vs. uniprot
Match: A0A836CLM4_9STRA (Cysteine desulfuration protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLM4_9STRA)

HSP 1 Score: 221 bits (564), Expect = 1.810e-62
Identity = 135/260 (51.92%), Postives = 167/260 (64.23%), Query Frame = 1
Query:  196 LMSTSTDLKELGLTPELERLTKVFRSCPTDKMRQMQLLHLAQMGDKMDPALQTEENKVLGCLSTVYVAAEVKDGLIYYSTDSDAMITKGLAGLLAMGLSGNSPEAIQTVKPEFIQVAGLQASLTAGRNNGFINMLRTMKGKAL-ALGGESAIRAAVEQAAPAAEAAAPEEAEQSGT-------MASRIAEKLQKLEPLKLVIEDESGGEESKFMINIVSKSFEGLTLLKRHRSVYGLMAEEMKIVHAVTLDTKTPEQAGM 951
            LMST+  ++ELGLT ELERL K FRS P DKMR  QLL +A  G ++    +T +NKV GCLSTV+V A++K G +Y+  DSDA +TKGL  +L  GLSGN+   IQ+VKPEFIQVAGLQ SLT GRNNGFINML TMK KAL A                     A  E +  G        M + I  KLQ L P++L +EDES  +E KF I +VS +FEGL L+KRH+ V+  +A+EMK VHAV L TKTP + G+
Sbjct:   60 LMSTAPSIQELGLTRELERLVKAFRSMPDDKMRYKQLLFMAAQGAELPSEFKTTDNKVQGCLSTVHVVAKMKQGKVYFEGDSDAQLTKGLLSILIRGLSGNAAADIQSVKPEFIQVAGLQTSLTPGRNNGFINMLSTMKRKALQAEXXXXXXXXXXXXXXXXXXXXADSEGDDMGVAEVPGKPMTTAIMRKLQALRPVRLQVEDESE-DEQKFYIAVVSSAFEGLPLVKRHQLVHLTIADEMKQVHAVQLSTKTPAEMGL 318          
BLAST of mRNA_Ecto-sp13_S_contig1417.3242.1 vs. uniprot
Match: M2XAG5_GALSU (Cysteine desulfuration protein SufE (Plastid) n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XAG5_GALSU)

HSP 1 Score: 182 bits (462), Expect = 6.290e-48
Identity = 114/260 (43.85%), Postives = 155/260 (59.62%), Query Frame = 1
Query:  214 DLKELGLTPELERLTKVFRSCPTDKMRQMQLLHLAQMGDKMDPALQTEENKVLGCLSTVYVAAEVKDGLIYYSTDSDAMITKGLAGLLAMGLSGNSPEAIQTVKPEFIQVAGLQASLTAGRNNGFINMLRTMKGKALA----LGGESAIRAAVEQAAPAAEAAAPEEAEQSGTMASRIAEKLQKLEPLKLVIEDES------------GGEESKFMINIVSKSFEGLTLLKRHRSVYGLMAEEMKI-VHAVTLDTKTPEQ 942
            D K+LGLTPEL RL K F + P  K+R  QLL+LAQ  + +    +T ENKV GCLSTV+V  +  +  I++  DSDA +TKGL  LL  GL+G + E I+ + PEF+ VAGL  SLT GRNNGF+NML+TMK KA      L G S          P  +A+       SG + S I EKLQKL+P +L + D+S               E+ F + +VS +F GL+L+KRH+ VY L+ +E+K  +HA+ +  KTP +
Sbjct:   64 DEKKLGLTPELARLVKSFAAAPDPKLRVQQLLYLAQTLEPLPFQYKTNENKVPGCLSTVHVVGDCDNEKIFFKGDSDAQLTKGLLALLIKGLNGCTVEEIERISPEFVTVAGLSVSLTPGRNNGFLNMLQTMKNKAKEAASKLNGVSREGRNYSDRVPKTQASPSTAETASGPIYSAIVEKLQKLKPSRLEVHDDSFQHAGHVGAKGLRSSETHFSVYVVSDAFVGLSLVKRHQLVYTLLGQELKEGLHALRIQAKTPSE 323          
BLAST of mRNA_Ecto-sp13_S_contig1417.3242.1 vs. uniprot
Match: A0A7S1T9Y1_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T9Y1_9RHOD)

HSP 1 Score: 181 bits (458), Expect = 1.000e-47
Identity = 120/254 (47.24%), Postives = 152/254 (59.84%), Query Frame = 1
Query:  214 DLKELGLTPELERLTKVFRSCPTDKMRQMQLLHLAQMGDKMDPALQTEENKVLGCLSTVYV-AAEVKDGLIYYSTDSDAMITKGLAGLLAMGLSGNSPEAIQTVKPEFIQVAGLQASLTAGRNNGFINMLRTMKGKALALGGESAIRAAVEQAAPAAEAAAPEEAEQSGTMASRIAEKLQKLEPLKLVIEDES-----------GGEESKFMINIVSKSFEGLTLLKRHRSVYGLMAEEMKI-VHAVTLDTKTP 936
            +L  LGLTPELERLT+ F   P  KMR  QLL +AQ    MD +L T ENKV GCLSTVYV A+   DG ++   DSDA +TKGL  LL  GL G + E I+ V PEFIQ +GL  SLT GRNNGF+NML  +K KA A   +S +        P  E   P +A   G +  RIA+KL  L+P +LVI D+S              E+ F I I S +FE LT ++RHR +Y L+A+E+   VHA+ +D +TP
Sbjct:   46 ELDALGLTPELERLTRQFSMVPDPKMRYQQLLFMAQELPSMDTSLMTSENKVPGCLSTVYVHASRNGDGTVHLVGDSDAQLTKGLIALLIQGLDGKTVEEIERVSPEFIQASGLAVSLTPGRNNGFLNMLAKIKAKARACI-DSPVEVLSATPDPVVERNIPPDA---GPIYRRIAQKLSVLKPTELVISDKSKQHSGHPGNLQAKTETHFSIRIRSTAFEPLTPVQRHRVIYTLLAQELNDGVHALQIDAQTP 295          
BLAST of mRNA_Ecto-sp13_S_contig1417.3242.1 vs. uniprot
Match: A0A8J5XHT0_DIALT (SufE domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XHT0_DIALT)

HSP 1 Score: 171 bits (432), Expect = 3.670e-44
Identity = 118/261 (45.21%), Postives = 153/261 (58.62%), Query Frame = 1
Query:  196 LMSTSTDLKELGLTPELERLTKVFRSCPTDKMRQMQLLHLAQMGDKMDPALQTEENKVLGCLSTVYVAAEV-KDGLIYYSTDSDAMITKGLAGLLAMGLSGNSPEAIQTVKPEFIQVAGLQASLTAGRNNGFINMLRTMKGKALALGGESAIRAAVEQAAPAAEAAAPEEAEQSGTMASRIAEK-LQKLEPLKLVIEDESG------------GEESKFMINIVSKSFEGLTLLKRHRSVYGLMAEEMK-IVHAVTLDTKT 933
            LMS S     LGLTPELE++ +VF+  P  K+R  QLL LAQ    MD  L+  ENKV GCLSTV+V A     G I+Y+ DSDAM+TKGL  LL  GLSG++ + I  V P+FIQ AG+ ASLT GRNNG +NML  MK KA AL G  A+ +    A P+A   AP        +A  I  K L KL+P  + + D S               E+ F + +VS  F GL+L++RH+ +Y L+AEEM   VHA+ +  +T
Sbjct:   35 LMSAS-----LGLTPELEQVVEVFKMVPDQKLRYQQLLFLAQKAKPMDAVLKVPENKVPGCLSTVFVHATADSSGNIFYTGDSDAMLTKGLVVLLTDGLSGHTADEILAVDPKFIQEAGIAASLTPGRNNGLLNMLALMKQKAKALAGV-AVPSGPSAANPSASPPAPVVEGGGAPVADSIIGKVLAKLKPTTVRLRDNSAQHAGHAGREGLAASETHFALEVVSDVFSGLSLVQRHQLIYALLAEEMAGSVHALQITART 289          
BLAST of mRNA_Ecto-sp13_S_contig1417.3242.1 vs. uniprot
Match: A0A7S3Q629_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q629_9STRA)

HSP 1 Score: 170 bits (431), Expect = 9.830e-44
Identity = 107/267 (40.07%), Postives = 156/267 (58.43%), Query Frame = 1
Query:  199 MSTSTDLKELGLTPELERLTKVFRSCPTDKMRQMQLLHLAQMGDKMDPALQTEENKVLGCLSTVYVAAEVKDG-----LIYYSTDSDAMITKGLAGLLAMGLSGNSPEAIQTVKPEFIQVAGLQASLTAGRNNGFINMLRTMKGKALALGGESAIRAAVEQAAPAAEAAAPEEAEQSGT-MASRIAEKLQKLEPLKLVIEDESGGE-------------ESKFMINIVSKSFEGLTLLKRHRSVYGLMAEEMKIVHAVTLDTKTPEQ 942
            M+ +++++ LGLTPELE++TK F S P +K+R  QLL++A     +DP L   ENKV GCLSTVYV    +D      ++ +  DSD  +TKGL  LL  G+SG + E IQ V PEFI  A +  SLT GRNNGF+NML  MK KA +     A  +  E+A    E       E +G  M + + E L KL+P+ L + D+S                ES F++N+V++ F+G+ L+KRH+ +Y ++ E M  +HA++++ K P Q
Sbjct:   50 MADTSEIEALGLTPELEKMTKAFGSIPDEKLRYKQLLYMANQLKPLDPKLMVSENKVPGCLSTVYVDCTARDNEEGETVLDFVGDSDGQLTKGLVALLVRGMSGCTAEQIQKVDPEFINAAKITQSLTPGRNNGFLNMLAVMKAKATSYS-VGADNSGGEEADADTEGVISSFDEIAGKPMYNDMMESLLKLKPVTLELIDDSASHAGHAGSKGWEESGESHFVLNMVAEVFDGMPLVKRHQLIYLVLGETMDKIHALSINAKAPSQ 315          
BLAST of mRNA_Ecto-sp13_S_contig1417.3242.1 vs. uniprot
Match: A0A4D9DCV6_9STRA (SufE domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DCV6_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.500e-43
Identity = 116/271 (42.80%), Postives = 160/271 (59.04%), Query Frame = 1
Query:  181 GRDATLMSTSTDLKE--LGLTPELERLTKVFRSCPTDKMRQMQLLHLAQMGDKMDPALQTEENKVLGCLSTVYVAAEVKDGLIYYSTDSDAMITKGLAGLLAMGLSGNSPEAIQTVKPEFIQVAGLQASLTAGRNNGFINMLRTMKGKALALG--GESAIRAAVEQAAPAAEAAAPEEAEQSGTMASRIAEKLQKLEPLKLVIEDESG-----------GEESKFMINIVSKSFEGLTLLKRHRSVYGLMAEEMKIVHAVTLDTKTPEQAG 948
            G   T   +STD+ E  LGLTP L  +++ F+    ++ R   LL LA     M    +  ENKV GCLSTVYV A ++DG +Y+  DSDA +TKGL  LL  G+SG S E IQ VKPEFI+ AG+ ASLT GRNNGF+NML  +K KA+     GE A      Q  PA E    +E       +S + + +  L+P +L ++D+S            G ES F + IV+  FEGL+L++RH+ VY ++A EM+ +HA+++D KTP +AG
Sbjct:   49 GAKTTTYMSSTDIDESSLGLTPRLFEVSRAFQLMD-ERTRVQNLLALASSMKPMKDFRKLPENKVPGCLSTVYVHAFMQDGKVYFEGDSDAQLTKGLVALLIEGMSGCSAEEIQAVKPEFIKYAGIAASLTPGRNNGFLNMLAMLKRKAVEAESKGEGA-----GQEEPAVEF---QEDIARPVYSSCMKKLINFLKPKRLEMQDDSAQHAGHAGAKGLGGESHFSLRIVADCFEGLSLVQRHKLVYTVLAAEMQQIHALSIDAKTPAEAG 310          
BLAST of mRNA_Ecto-sp13_S_contig1417.3242.1 vs. uniprot
Match: A0A1Z5K9T0_FISSO (SufE domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9T0_FISSO)

HSP 1 Score: 164 bits (415), Expect = 4.340e-42
Identity = 113/266 (42.48%), Postives = 146/266 (54.89%), Query Frame = 1
Query:  190 ATLMSTSTDLKELGLTPELERLTKVFRSCPTDKMRQMQLLHLAQMGDKMDPALQTEENKVLGCLSTVYV---AAEVKDGLIY--YSTDSDAMITKGLAGLLAMGLSGNSPEAIQTVKPEFIQVAGLQASLTAGRNNGFINMLRTMKGKALALGGESAIRAAVEQAAPAAEAAAPEEAEQSGTMASRIAEKLQKLEPLKLVIED----------ESGGEESKFMINIVSKSFEGLTLLKRHRSVYGLMAEEMKIVHAVTLDTKTPEQ 942
            +T   T TD   + LTPEL ++   F S   DK+R  QLL++A     +DP+    ENKV GCLSTVYV   A +  DG+I   +  DSD ++TKGL  LL  GLSGN+ E IQ V P FIQ  G+ ASLT GRNNGF+NML  MK KA  L          E A   A    P        M   I + LQ L+P+ L +ED           S   E+ F + IV+ +FEGL L+KRH+ VY L+ + M  +HA+ +  KTPE+
Sbjct:   11 STQEDTHTD-NPMRLTPELLKIANAFESIGDDKLRYKQLLYMATQLSPIDPSQAIPENKVPGCLSTVYVDGTAVDKGDGVIRIEFVGDSDGLLTKGLVALLVRGLSGNTAEDIQNVDPGFIQKTGIAASLTPGRNNGFLNMLNVMKIKAKQLEANYQATGPSESATTTAGDEKP--------MYQAIVQGLQALKPVSLKLEDVSYQHAGHREASKDGETHFNLEIVASAFEGLNLVKRHKLVYMLLGDVMPRIHALQISAKTPEE 267          
BLAST of mRNA_Ecto-sp13_S_contig1417.3242.1 vs. uniprot
Match: A0A7S2ZLB0_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZLB0_9RHOD)

HSP 1 Score: 160 bits (405), Expect = 1.770e-40
Identity = 108/269 (40.15%), Postives = 152/269 (56.51%), Query Frame = 1
Query:  184 RDATLMSTS-TDLKELGLTPELERLTKVFRSCPTDKMRQMQLLHLAQMGDKMDPALQTEENKVLGCLSTVYVAAEVKDGL--IYYSTDSDAMITKGLAGLLAMGLSGNSPEAIQTVKPEFIQVAGLQASLTAGRNNGFINMLRTMKGKALALGGESA---IRAAVEQAAPAAEAAAPEEAEQSGTMASRIAEKLQKLEPLKLVIEDES--------GGEESKFMINIVSKSFEGLTLLKRHRSVYGLMAEEMKI----VHAVTLDTKTP 936
            R  T+M+ +  ++  L LTP LE++    +  P  K+R  QLLH A     M+P L+TE NKV GCLSTV+V AE+      +Y+  DSDA +TKGL  +L  GLSG++   I+ V P+FI+ +GL  SLT GRNNGFINML+ MK KA  L  E+A    R+  +    A E   P         A+ I   L +L P++L +ED S         G+E+   I +VS++FE + L+ RH+ +Y L+   M      VHA+ +DTK P
Sbjct:   25 RLGTIMTAADVEMSSLNLTPALEKMVSSLKMFPDSKVRYQQLLHYASTLGPMEPELKTEMNKVPGCLSTVFVHAEMNPDTRKVYFKGDSDAQLTKGLVSMLVNGLSGSTALQIEKVNPDFIKASGLTVSLTPGRNNGFINMLKLMKRKAAVLDEEAAGLGPRSTGQTDEDAVEFEVP-----GKPRATAIGRALMQLNPIELEVEDFSESHKGHAHAGDETHIRIKVVSEAFEDMPLVLRHKVIYTLLDSFMDKGSGGVHALQMDTKAP 288          
BLAST of mRNA_Ecto-sp13_S_contig1417.3242.1 vs. uniprot
Match: A0A7S4I3L9_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I3L9_9STRA)

HSP 1 Score: 161 bits (407), Expect = 4.260e-40
Identity = 114/278 (41.01%), Postives = 158/278 (56.83%), Query Frame = 1
Query:  190 ATLMSTSTDLKELGLTPELERLTKVFRSCPTDKMRQMQLLHLAQMGDKMDPALQTEENKVLGCLSTVYVAAEVK------DGLIYYSTDSDAMITKGLAGLLAMGLSGNSPEAIQTVKPEFIQVAGLQASLTAGRNNGFINMLRTMKGKALALGGESAIRA-----AVEQAAPAAEAAAP---EEAEQSGTMASRIAEKLQKLEPLKLVIEDES----------GGEES---KFMINIVSKSFEGLTLLKRHRSVYGLMAEEMKIVHAVTLDTKTPEQ 942
            AT  +T+ D   LGLTPEL R+T  F S P +KMR  QLL +A     + P     ENKV GCLSTVYV A ++      + ++ +  +SD ++TKGL  LL  GLSG + E +Q V PEFI  A +  SLT GRNNGF+NML  MK KA  +GG  A  A     +VE+     E AA    EE E      + +A+    L+P  + + D S          G EES    F INIV+++F+GL+L+KRH+ VY L+ + M+ +HA+ +  +TP++
Sbjct:   72 ATDEATTAD--PLGLTPELRRMTDAFASIPDEKMRYKQLLFMANQLPAISPDAMVPENKVPGCLSTVYVDAVMERDEERGEDVVKFLGESDGLLTKGLVALLVRGLSGCTAEEVQRVNPEFIHEAKISQSLTPGRNNGFLNMLAVMKKKAAEIGGPEAAAAGDDAGSVEEGED--EVAATLTFEEVEGKPMYNAMMAKLTTMLKPTSIELVDNSDQHAGHAGSKGWEESGESHFSINIVAEAFDGLSLVKRHQLVYMLLGDIMQKIHALQIVARTPDE 345          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1417.3242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD56_9PHAE4.430e-17791.54SufE domain-containing protein n=3 Tax=Ectocarpus ... [more]
A0A836CLM4_9STRA1.810e-6251.92Cysteine desulfuration protein n=1 Tax=Tribonema m... [more]
M2XAG5_GALSU6.290e-4843.85Cysteine desulfuration protein SufE (Plastid) n=1 ... [more]
A0A7S1T9Y1_9RHOD1.000e-4747.24Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A8J5XHT0_DIALT3.670e-4445.21SufE domain-containing protein n=1 Tax=Diacronema ... [more]
A0A7S3Q629_9STRA9.830e-4440.07Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A4D9DCV6_9STRA1.500e-4342.80SufE domain-containing protein n=2 Tax=Monodopsida... [more]
A0A1Z5K9T0_FISSO4.340e-4242.48SufE domain-containing protein n=2 Tax=Fistulifera... [more]
A0A7S2ZLB0_9RHOD1.770e-4040.15Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S4I3L9_9STRA4.260e-4041.01Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1417contigEcto-sp13_S_contig1417:5957..11963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score542.7
Seed ortholog evalue1.1e-151
Seed eggNOG ortholog2880.D7G7R0
Preferred namebola1
Model size2284
KEGG koko:K22066
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG free text desc.protein maturation by iron-sulfur cluster transfer
EggNOG OGsCOG0271@1,KOG2313@2759
Ec32 ortholog descriptioncysteine desulfuration protein
Ec32 orthologEc-06_000700.1
Cds size954
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462757.1475573-UTR-Ecto-sp13_S_contig1417:5956..72861681462757.1475573-UTR-Ecto-sp13_S_contig1417:5956..7286Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1417 5957..7286 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462757.1590996-CDS-Ecto-sp13_S_contig1417:7286..74971681462757.1590996-CDS-Ecto-sp13_S_contig1417:7286..7497Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1417 7287..7497 -
1681462757.169854-CDS-Ecto-sp13_S_contig1417:9798..99691681462757.169854-CDS-Ecto-sp13_S_contig1417:9798..9969Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1417 9799..9969 -
1681462757.1802835-CDS-Ecto-sp13_S_contig1417:10717..109151681462757.1802835-CDS-Ecto-sp13_S_contig1417:10717..10915Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1417 10718..10915 -
1681462757.188682-CDS-Ecto-sp13_S_contig1417:11589..119631681462757.188682-CDS-Ecto-sp13_S_contig1417:11589..11963Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1417 11590..11963 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1417.3242.1prot_Ecto-sp13_S_contig1417.3242.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1417 7287..11963 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1417.3242.1

>prot_Ecto-sp13_S_contig1417.3242.1 ID=prot_Ecto-sp13_S_contig1417.3242.1|Name=mRNA_Ecto-sp13_S_contig1417.3242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=318bp
MVARAAILSVALTTSMCSVGEAFVTPNVAVVPGGAFSSHRAAQAARPKRP
AAPAAEPARSGRDATLMSTSTDLKELGLTPELERLTKVFRSCPTDKMRQM
QLLHLAQMGDKMDPALQTEENKVLGCLSTVYVAAEVKDGLIYYSTDSDAM
ITKGLAGLLAMGLSGNSPEAIQTVKPEFIQVAGLQASLTAGRNNGFINML
RTMKGKALALGGESAIRAAVEQAAPAAEAAAPEEAEQSGTMASRIAEKLQ
KLEPLKLVIEDESGGEESKFMINIVSKSFEGLTLLKRHRSVYGLMAEEMK
IVHAVTLDTKTPEQAGM*
back to top

mRNA from alignment at Ecto-sp13_S_contig1417:5957..11963-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1417.3242.1 ID=mRNA_Ecto-sp13_S_contig1417.3242.1|Name=mRNA_Ecto-sp13_S_contig1417.3242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6007bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1417:5957..11963- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTGCACGAGCAGCAATTTTGTCAGTCGCCTTGACTACCAGCATGTG CTCGGTCGGCGAGGCCTTTGTGACGCCCAACGTCGCAGTAGTGCCAGGCG GGGCGTTTTCGTCTCACAGAGCAGCACAGGCCGCACGCCCGAAACGGCCA GCAGCTCCTGCTGCTGAACCAGCCCGTAGCGGACGCGATGCTACTCTCAT GTCGACATCCACCGACCTGAAGGAGTTGGGGCTAACCCCGGAGCTGGAAA GGTTGACGAAGGTGTTCAGGTCTTGCCCCACGGACAAGATGCGACAGATG CAGCTCCTGCACCTCGCGCAGATGGGCGACAAGATGGACCCGGCTCTCCA GACAGAGGAGAACAAGGTGTTGGGGTGAGTTGAGGTCTACTGCCTGTAGG GCGTGAAAAAATGTTTAAGAAGCAACCTGGGTGTCGCTTTGGTCTAGATG GCGACTGTTCCCCAGCGAAACATGAACACATGATGTAGGATTCGGCTGTG TGATGTGGTGACCTGCTTGGACCTAGAGTTGAAGTCGGACACCAGCGGGC GGTCCTTTCGACACAGCAAAGCAAGCAAAATGTACTACTGCTTGGAGACG GTAGTGATTCGAAGCTCTCGTCAGCAGCAGCCAGAGACTTTTGTGTGGTG GCATTAGTTGGTGCTCCAACGTTCGCAGCATGAACCAGTACGTGGGCGAA CGTATACTATACCACTGCCTGTACCGGGCTGCCAAGACTTGCAAAACACG TGTCGACGGACGGACGAACGACGCGAGGTCTTGGCACATCCGTCCTGGGC TGCGACAACAAAGGGTCACAGGGCGTACTGTATCTGCATGTATTGAACCC TGCACCTACCCAAAGGGCGTATAATGGTGTACGGCAGCAGCAACCAACGC AAAACACGAAGCTTGGGAAGGAGCGCTGTGGCGAAGAACGTGGAATTCCG AACGAGAGTGAGTGTATTTTAGTTGAGCAACGCGTCTCTTGTTGCCGTTC CGCTTGGCTCTGGCGATGGCCTTGATCTCGTTATGTTCGTTGTTCCAGGT GCCTATCGACCGTGTACGTTGCGGCGGAGGTGAAGGATGGCCTAATCTAC TACTCCACGGACTCGGACGCGATGATCACCAAGGGGTTGGCTGGCCTCCT CGCGATGGGCCTTTCCGGTAACTCGCCGGAGGCCATCCAGACCGTCAAGC CAGAGTTCATCCAAGTGGCCGGCCTTCAGGCCAGCCTCACTGCCGGGTGT GTACGCCGCGCTTGTCGCCTTATCCAAAACGACTGTCACGGTCGTTGCTG TCCTGTTATCGTTTGTTGGAGCTGTAGATAGATGGGGTTTCAAGGCTCCT ATTTTCTATTTTCAGGGTGCTCGATGGGTGTGACATGCGCTTTTGACCGC ACCAAGAAGGGCGAGGCGCGATCAAGGCTTCACGTCTCCACAGCAGTATT GCTGGGCGCACCGATCAGGGTGGGCTTCTGGCCACCGTGCCATCCGCCAA GCCCCTACTGGTGTTGCATGTTGCGCTTGGCCGCTTCTTTGTGAATGTGT TTGTCAGCCCCTCCTGTTGTCGTATTTTATTTACCCGCTGGAGCGCACAT CACGTCGGCATATTAATACGGCTCGTGTATCGTTTTGTGGGTTCGCGGAG GCGATGGATGGAGGAAAATAACTCATATCTCCGTCGGGTACTTCACCGTA CAGAGTCGGCGCAGACTACAATTCCCTGTATTCATTGTTAGCGACATGAA AGTCAGCACAGACAACAAAACCCTTTTTTTATGTGTTTGCTACGTAGTAC ATGAGAGACGGCACAGACTACACGTAACAGTACGAGATGACCCCTCGTGT AGAGCGCCCCTAATCGTGCTATACTGAGGTCGGGTATGGGACGCATGTGG TTGGTCCGGCCCAAGTTTTGGTCGGCGTTTGTTGCGTGCTTCTGCGTTGG GTGCCGCACCTAAACGCTCTTTGCATCGCCGCTACTGCATGCAGGCGAAA TAACGGGTTCATCAACATGCTACGGACCATGAAGGGGAAGGCGCTAGCGT TGGGCGGCGAGTCGGCCATCCGCGCAGCTGTGGAGCAAGCAGCCCCGGCG GCGGAAGCAGCGGCGCCGGAGGAGGCGGAGCAAAGCGGGACGATGGCGTC ACGGATAGCAGAAAAGTGAGAGAGCGGAGCAATCATCCGTTTTTGGCTTG CATCCTGAGGACGTCGCCACTGATTACGTTTCCAGGATAGACTACAATAT GGGTCGACGTGTCGGAGGATTCGCGCCGTGTGCCTGTTGCCGGGCGGGCA AGAGACTGTGTAGAACTGACTTACCGGTGAATCTAACGCTTACCGTTACT CTCGTCCTCCGGTTGGCTCTCATCCCGTGGTGTCACCATCGCTCATAGGA CCTTATTTTGGTGTCATTTCCTAAGGTGACAGTTGTTGAAGATATTGGTG AGAAAACGGGCTGGGGACCGTTTTGGTAAACGGTTTAAAGTGCGAGTTCT GGTTGAGGTTCCTTTCGGTCAGATTGTGAACGGTACTTAATCGTACGGAA ATGCCACCACGAAAAAATCGAAGAATTCCCTCCCCAAAAGGCGTATATTT CAAGTCTATGGAGAAATGGGCTCTGGAAACAACTGTCTACACATGGGATA AAGGGGATAATGTGGAGAGCACTGAAGAAAATGACGGAGTGAACGAAAAG CGCTGTCATGCTAGCTGGAGAAATGTCTTAATTCTTCACCATTATACAGG GGGTCTCACAAGGTTGCAATTTGTCCCTAACATTGTTCCAGGTGCTTATC AACGATCTGTTGAAAGTGTTGAAAATGGTTTGGACAGTTGGGATGGGAGT AAAGGTAGAGAAAACTTCTGCGGTGGGAATGCAGTCTTCGGATGATTTTT TCGGGATGTCTGATACCCTGAGGGACTCTAACTGCAGGTTGACGCAGCGA AGGATTTTTCTGACAAGTGGAGATTGTCTGCCAACGTTAACACAAGTGCC GTTATGGTATGCAACGAAGTCAGGGAGAAAACTGTAGAGTATAGATAGAA GTGGGGTGGTCGAGGAGCTGGCAGTAGTGGATCAGGACACATGTCTCGGA GAAGAAATCGCAAAAGACTGTTCGTGGAATGGACACATGTCCAAGGTGGC GGAAAAGGGCAAAGCACGAGCAGGGAAGCTGAACCCAGTACTGGCAAACC GGCACCTCGATACTCGCGTAAAATTGACAGTTATGAAGAGCGTAATCGTA CCGCCGCTAGAGCACGCCGGAGAAGTATGGGAACCAAATAAGAAGGTAGT CAACGAGCTCGAGGCCGCGCAGATGAAAGCAGCGAAGATCATCCTAGGAT GCTCCAAGCGCACAAGTACTGCAACCGTCAGGGCAGAACTGGGGATCCAT TCCCTACGATCGGGAAGAGATGCAAGGGAGCTAGAATGGTAGTACGGCAT GTGCGGTATGGGCGAGGAGAGGTTGCCGAGAAGAGCTTGGAAGGCGAAGT GGGCAAACAAGAAGAGGGGTAGACAACCCACGGAGTGCGTCAAGGTTGTA GATGACGTATGGAAGGGGTTCGAAATTTTCGGAGAAGGTGATACCCTGGA AACGAAAGGTCTAGAGGAATTCAGGAGAAGGTATCTGTTGCTTTTGCCGA TAGAGAAGCACAGAGTCTAGCCAAAGAAACCAAGGATAAGGAGGGTCTAG AAGTATACGGAACGTTGAAAGAAGGAATAGGGTTCAAGGAGTACCTACAT GGATCAATGGATGCAGGGACTACGCTGGAGGTCAAATTTAGGAACGGGTA CAGTTGCCTTCGAGATGTAGACGAAGATTTAGGAAGGTAGACGATGAAGA CGACAAGTTCAAGTCGGAGTGCGAAGACCGGGTCCATGTAGTTGTGGAGT GTCCGTTGTACAAGGAGAGGGACGTGTACATGACTAAGCTGGGAAAAGTA TGAAGGTACAGGGAAATTTTTATGGCATGGAATAGCTGGGAAAAGACGGT AGCTGTACTAGGACATAGGAAGTGGGTTGAAAGGGGAGGAGTGGGGTCGA TAGGATCGACAGGCTAGGGAAAACAGTGTTGAGCCACCTTTTTCAAAGTA GGAATGAATGGTTAGCCACCTGTGATCGGTCCTGTGGGAACAATGCTTCG TCCTCCACAGAAGAGGACGCGTGGAGAATCGTTTAAACGCTAAGGCATTC ATAACATAAGAGTACGCCCCCCCCCCCCCCCCCCCCCTCCCCCCCTCTAC TTTTCTTTCGTTTGTTCTTTTTTGTTTTTTCTTGTTCTCCTNNNNNNNNN NTTTGCTCTCTAAATAAGAGGGGGCGGGGGAAATCGTTTTTTCGCTCGGG CATTTATAACATAAGGGCTCCCCCCCCCCCCCCCCCTCTACTATTGTTCA TCACTTATTCCGGTCTGACTTGCTGATTTCGCTTGTCTACCGCCTGTCGT CCTGTCGTATTCCTAGGCTGCAAAAGCTGGAGCCGTTGAAGCTGGTCATC GAGGACGAGTCAGGCGGGGAAGAGTCCAAGTTCATGATTAACATCGTCAG CAAATCCTTCGAGGGCCTGACGCTGTTGAAGCGGCACCGATCCGTGTACG GCCTCATGGCCGAAGAGATGAAAATAGTACACGCGGTTACCCTAGACACG AAGACGCCCGAGCAAGCAGGAATGTAGGGTGTCGGATGCTGCCGTGTGAG CGTTTAACTCGCAACACTTTCGCGATGACTTGCGACACCTGCGTTGAGTC GCGAACCTGACTTGGCTTGCAAACTTTGCGTTGACTTGCAACAATATGGT CGGTATAATGTGGGCTGTGTACCACGGCAGTCATGTGTGGTCAGCATGAC TTTTGTGTTGTTTTTGAGTGACTTCGTACTTTTTGTTGTGCGCCCATCTG TTTGTTGAGGAGTGTGTAGTTGTTTCTGTGGAACACTTTGCACGAAGAGC TTGGGGTTTGATTTTCGATGCGCAGAGTGAGCGCAATATGTGCCAGTGTG TTATACAATTGGTACTTTCGCCTGGTGAAGCTAGCCGTCCGGCACGAATA AATTAGTACCGTATTTTCCTTTCGCCCTATCCGGGGGTGGAGATGATTCT GTAGGCATCTTCTTCCCTCATGAGTCAAGACCACCGGTGTCCATCAAAGC AACGTAATAGCATTTTGCGGGTTTCATGTCCGCCCGTGGGAGTACCTTGT TATACGTTGTGAACATAATCACACGTGTGTACTTTTATGTACATTCAGGG CTTGCATGTCTCGGCTGCCTCGTTTGTACCGTCTGTGGATCCAGATTTGT TGTATCCCCGCTGTACCGGTACAACCTTTCAAAGTTGCTTGCGGACAGAG TTATCACATTTTCGCTAACGGCGGAGGGACGCGAATGCGCGCGCTGCATA ACATTATTTCCTCTGCCTGTTCGCACACTTGCATCGTTTCCATCACGCTG AACTACTTTCTCTTCGACGTTGCCTCTCTTGTCGTTTTTCTTGTTCACTG CGATACCGTGTCGGTAGTGTAGATGACATTCCATCTATTCCGTTAGTAGA AGTTGATACTTGCTTCGGCCCACTTAATTTCCACCAAATTTCCGCCTGGA TCATGATTTGTTTTTTGAAGACTTCCTGCCGGAAACTTTTCAGGAGCGTG TATTCCTCAGATTTTGGGCACGAGAAGGGGAATACTATTTCGTGCGGCAC CACCATGGTTTCTCTGGGAGAACAAAATTCGTCGTTTGGGGCGAGAAGAG GCTGGGATGCACCCTAGCGATGAGTTTGCTTATGAAGACAAGCGAGTAGA TAAGAATTGTTCGTGAAAGAGATCGAACTGTTGAGCGCTGTGAGCGGAAC CGCCTGCGACGAGTGTCGTTCATTTCCTATCCGAGGGTGTGCATGAATAG GAAAGGGTCTACAAGAAGAAAGAACCTTGCGTTCCCACTGTGTCAACTAG GGGTGGGGTACTTTGCCCAAACGCTGAATTTCAGGCATGAGGGCAAATTC GCAATTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1417:5957..11963-

>mRNA_Ecto-sp13_S_contig1417.3242.1 ID=mRNA_Ecto-sp13_S_contig1417.3242.1|Name=mRNA_Ecto-sp13_S_contig1417.3242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=954bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1417:5957..11963- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTGCACGAGCAGCAATTTTGTCAGTCGCCTTGACTACCAGCATGTG
CTCGGTCGGCGAGGCCTTTGTGACGCCCAACGTCGCAGTAGTGCCAGGCG
GGGCGTTTTCGTCTCACAGAGCAGCACAGGCCGCACGCCCGAAACGGCCA
GCAGCTCCTGCTGCTGAACCAGCCCGTAGCGGACGCGATGCTACTCTCAT
GTCGACATCCACCGACCTGAAGGAGTTGGGGCTAACCCCGGAGCTGGAAA
GGTTGACGAAGGTGTTCAGGTCTTGCCCCACGGACAAGATGCGACAGATG
CAGCTCCTGCACCTCGCGCAGATGGGCGACAAGATGGACCCGGCTCTCCA
GACAGAGGAGAACAAGGTGTTGGGGTGCCTATCGACCGTGTACGTTGCGG
CGGAGGTGAAGGATGGCCTAATCTACTACTCCACGGACTCGGACGCGATG
ATCACCAAGGGGTTGGCTGGCCTCCTCGCGATGGGCCTTTCCGGTAACTC
GCCGGAGGCCATCCAGACCGTCAAGCCAGAGTTCATCCAAGTGGCCGGCC
TTCAGGCCAGCCTCACTGCCGGGCGAAATAACGGGTTCATCAACATGCTA
CGGACCATGAAGGGGAAGGCGCTAGCGTTGGGCGGCGAGTCGGCCATCCG
CGCAGCTGTGGAGCAAGCAGCCCCGGCGGCGGAAGCAGCGGCGCCGGAGG
AGGCGGAGCAAAGCGGGACGATGGCGTCACGGATAGCAGAAAAGCTGCAA
AAGCTGGAGCCGTTGAAGCTGGTCATCGAGGACGAGTCAGGCGGGGAAGA
GTCCAAGTTCATGATTAACATCGTCAGCAAATCCTTCGAGGGCCTGACGC
TGTTGAAGCGGCACCGATCCGTGTACGGCCTCATGGCCGAAGAGATGAAA
ATAGTACACGCGGTTACCCTAGACACGAAGACGCCCGAGCAAGCAGGAAT
GTAG
back to top