prot_Ecto-sp13_S_contig1417.3241.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1417.3241.1
Unique Nameprot_Ecto-sp13_S_contig1417.3241.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length225
Homology
BLAST of mRNA_Ecto-sp13_S_contig1417.3241.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 400 bits (1029), Expect = 1.960e-140
Identity = 205/223 (91.93%), Postives = 211/223 (94.62%), Query Frame = 0
Query:    1 MVASQMFLGTAAALIASSTAFIAPMAVRSAAPASSGSALKMSAGSDYVATLPGAPFGDGKIFDPLSFSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFALLGMAFVEYNTIMTAFAQPSFVTGEGGLKEDYIPGDLGFDPLNIKPKTEEALDAMKTKELNNGRLAMIGTAGMLVQELVNGQDILPNFF 223
            MVASQMFLGTAAALIASSTAF+AP+AVRSAAPAS+ SALKMSAGSDYVATLPGAPF DGKIFDPLS SDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAF+LLGMAF+EYNTIMTAF  PS VTGEGGLKEDYIPGDLGFDPLN+KP  E ALD MKTKELNNGRLAMIG AGML QELVNGQDILPNFF
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNFF 223          
BLAST of mRNA_Ecto-sp13_S_contig1417.3241.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 370 bits (951), Expect = 1.300e-128
Identity = 186/219 (84.93%), Postives = 202/219 (92.24%), Query Frame = 0
Query:    1 MVASQMFLGTAAALIASSTAFIAPMAVRSAAPASSGSALKMSAGSDYVATLPGAPFGDGKIFDPLSFSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFALLGMAFVEYNTIMTAFAQPSFVTGEGGLKEDYIPGDLGFDPLNIKPKTEEALDAMKTKELNNGRLAMIGTAGMLVQELVNGQDIL 219
            MVA+Q+FLG+AA LIASSTAF+APMAVRSAAPASS SALKMSAGSDYVATLPGAPFGDGKIFDPL+ SDGA P DIKKWREAEIKHGRVAMLASLG+LVAE+YHPLFMG D+IGPA+ HFQEISAQ+PEFW F+LLGMAF+EYNTIMTAF  PS VTGEGGLKEDY+PGDLGFDPLN+KP+ E ALD MKTKELNNGRLAMIG AGMLVQEL+N  DIL
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219          
BLAST of mRNA_Ecto-sp13_S_contig1417.3241.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 352 bits (904), Expect = 1.950e-121
Identity = 176/216 (81.48%), Postives = 196/216 (90.74%), Query Frame = 0
Query:    4 SQMFLGTAAALIASSTAFIAPMAVRSAAPASSGSALKMSAGSDYVATLPGAPFGDGKIFDPLSFSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFALLGMAFVEYNTIMTAFAQPSFVTGEGGLKEDYIPGDLGFDPLNIKPKTEEALDAMKTKELNNGRLAMIGTAGMLVQELVNGQDIL 219
            S MFLGTAA LIASSTAF+APMAVRSAAPASS SALKMSAGSDYVATLPGAPFGDGKIFDPL  SDGA PG+IK WREAEIKHGRVAMLA++G++VAE+YHPLFMG D+IGPA+ HFQEISAQFPEFWAF+LLGMAF+EYNTI  A+A+PS VTGEGGL+++Y PGDLGFDPLN+KPK +  L+ M+TKELNNGRLAMIG AGMLVQELVN  DIL
Sbjct:    5 SNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 220          
BLAST of mRNA_Ecto-sp13_S_contig1417.3241.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 319 bits (817), Expect = 3.110e-108
Identity = 160/216 (74.07%), Postives = 187/216 (86.57%), Query Frame = 0
Query:    4 SQMFLGTAAALIASSTAFIAPMAVRSAAPASSGSALKMSAGSDYVATLPGAPFGDGKIFDPLSFSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFALLGMAFVEYNTIMTAFAQPSFVTGEGGLKEDYIPGDLGFDPLNIKPKTEEALDAMKTKELNNGRLAMIGTAGMLVQELVNGQDIL 219
            S MFLGTAA LIASS AF+ PMAVRSAAPASS SALKMSAG+DY+ATLPGA   +GKIFD L  +DGA PG+IK WREAEIKHGRVAMLA++G++VAE+YHP FMG D+IGPA+ HFQEI+A+FP+FWA++LLGMAF+EYNTI  A+A+PS VTGEGGL+++Y PGDLGFDP  IKPK +  L+ M+ KELNNGRLAMIG  GMLVQELVNGQDIL
Sbjct:    5 SNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDIL 217          
BLAST of mRNA_Ecto-sp13_S_contig1417.3241.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 296 bits (757), Expect = 1.720e-99
Identity = 160/219 (73.06%), Postives = 168/219 (76.71%), Query Frame = 0
Query:    1 MVASQMFLGTAAALIASSTAFIAPMAVRSAAPASSGSALKMSAGSDYVATLPGAPFGDGKIFDPLSFSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFALLGMAFVEYNTIMTAFAQPSFVTGEGGLKEDYIPGDLGFDPLNIKPKTEEALDAMKTKELNNGRLAMIGTAGMLVQELVNGQDIL 219
            MVASQMF+GTAA LIASSTAF+APMAVRS     S   LKMSAGSDYVATLPGAPF DGKIFDPL  SDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE                            FWAF+LLGMAF+EYNTIMTAF  PS VTGEGGLKEDY+PGDLGFDPLN+KP  E ALD MKTKELNNGRLAMIG AGML QELVN  DIL
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 191          
BLAST of mRNA_Ecto-sp13_S_contig1417.3241.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 283 bits (723), Expect = 2.940e-94
Identity = 136/160 (85.00%), Postives = 144/160 (90.00%), Query Frame = 0
Query:   60 KIFDPLSFSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFALLGMAFVEYNTIMTAFAQPSFVTGEGGLKEDYIPGDLGFDPLNIKPKTEEALDAMKTKELNNGRLAMIGTAGMLVQELVNGQDIL 219
            +IFDPL  SDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE+YHP FMG D+IGPA+ HFQEISAQFPEFWAF+LLGMAFVEYNTIMTAF  PS VTGEGGLKEDYIPGDLGFDPLN+KP  E ALD MKTKELNNGRLAMIG AGML QELVN  DIL
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195          
BLAST of mRNA_Ecto-sp13_S_contig1417.3241.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 285 bits (729), Expect = 2.170e-92
Identity = 182/391 (46.55%), Postives = 196/391 (50.13%), Query Frame = 0
Query:    1 MVASQMFLGTAAALIASSTAFIAPMAVRSAAPAS-SGSALKMSAGSDYVATLPGAPFGDGK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFDPLSFSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFALLGMAFVEYNTIMTAFAQPSFVTGEGGLKEDYIPGDLGFDPLNIKPKTEEALDAMKTKELNNGRLAMIGTAGMLVQELVNGQDIL 219
            MVASQMF+GTAA LIASSTAF+AP+AVRS A  + S S+L MSAGSDYVATLPGAPF DGK                                                                                                                                                                           IFDPL  SDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE+YHP FMG D+IGPA+ HFQEISAQFPEFWAF+LLGMAF+EYNTIMTAF  PS VTGEGGLKEDY+PGDLGFDPLN+KP  E ALD MKTKELNNGRLAMIG AGML QELVN  DIL
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 391          
BLAST of mRNA_Ecto-sp13_S_contig1417.3241.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 2.480e-84
Identity = 121/160 (75.62%), Postives = 139/160 (86.88%), Query Frame = 0
Query:   60 KIFDPLSFSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFALLGMAFVEYNTIMTAFAQPSFVTGEGGLKEDYIPGDLGFDPLNIKPKTEEALDAMKTKELNNGRLAMIGTAGMLVQELVNGQDIL 219
            KIFDPL  +DGA  GDIK WREAEIKHGRVAMLASLG+LVAEEYHP FMG D+IGPA+ HFQEISA+FPEFWAF+LL +A +EYNTI  A+A+PSFVTGEGGL+++Y PGDLGFDPLN+KP  + AL+ M+TKELNNGRLAMIG AG LVQELVN  +IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174          
BLAST of mRNA_Ecto-sp13_S_contig1417.3241.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 2.210e-82
Identity = 131/206 (63.59%), Postives = 159/206 (77.18%), Query Frame = 0
Query:    9 GTAAALIASSTAFIAPMAVR-SAAPASSGSALKMSAGSDYVATLPGAPFGDGKIFDPLSFSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFALLGMAFVEYNTIMTAFAQPSFVTGEGGLKEDYIPGDLGFDPLNIKPKTEEALDAMKTKELNNGRLAMIGTAGMLVQELV 213
            G A+   AS  AFI P     SA P S+  A +MSAGSDYV+TLPGAPF DGK++DP+  S  A P DIKKWREAEIKHGRVAMLAS+G+LVAE +HPLF+G D+IGPAI HF+EI+A+FP+FWA  LL +A++EY  I   FA+   VTGEGG++ DY+PGDLGFDPL + P+ E  L+ MKTKELN+GRLAMIG  GM+VQELV
Sbjct:   61 GMASWCFASCEAFIVPTPTTLSARPTST--AARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELV 264          
BLAST of mRNA_Ecto-sp13_S_contig1417.3241.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 4.350e-73
Identity = 126/229 (55.02%), Postives = 162/229 (70.74%), Query Frame = 0
Query:    1 MVASQMFLGTAAALIASSTAFIAPMAV--RSAAPASSGSALKMSAGSDYVATLPGAPFG---DGKIFDPLSFSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFALLGMAFVEYNTIMTAFAQPSFVTGEGGLKEDYIPGDLGFDPLNIKPKTEEALDAMKTKELNNGRLAMIGTAGMLVQELVNGQDILPNFFS 224
            MV SQ+FLGTAA LIASS AF+AP+A    S A  ++ S  KM+AGSDY A+LPGAPFG   +GK FDP   +    P  IKKWREAE+KHGRV+MLA++GILV+E +HPLFMG  +IGPA+ H Q+I+  +P FW  +L  +AF+E  TI  A+   S VTG G LK +Y PGDLGFDPL + PK  E    ++++EL+ GR AMIG  GM+VQE+V+G+ IL +  S
Sbjct:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHIVS 229          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1417.3241.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q9_ECTSI1.960e-14091.93Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7Q6_ECTSI1.300e-12884.93Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI1.950e-12181.48Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S0_ECTSI3.110e-10874.07Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5K8D0_9PHAE1.720e-9973.06LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D7G7S5_ECTSI2.940e-9485.00Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JWB4_9PHAE2.170e-9246.55LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G7Q7_ECTSI2.480e-8475.63Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G5B4_ECTSI2.210e-8263.59Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7FQG7_ECTSI4.350e-7355.02Light harvesting complex protein n=2 Tax=Ectocarpu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023329Chlorophyll a/b binding domain superfamilyGENE3D1.10.3460.10coord: 38..224
e-value: 9.6E-38
score: 131.8
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 50..211
e-value: 8.4E-37
score: 127.2
NoneNo IPR availablePANTHERPTHR21649:SF63coord: 10..215
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..35
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..35
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 36..224
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.55
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 58..222
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 10..215

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1417contigEcto-sp13_S_contig1417:2925..5331 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1417.3241.1mRNA_Ecto-sp13_S_contig1417.3241.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1417 2925..5894 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1417.3241.1 ID=prot_Ecto-sp13_S_contig1417.3241.1|Name=mRNA_Ecto-sp13_S_contig1417.3241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=225bp
MVASQMFLGTAAALIASSTAFIAPMAVRSAAPASSGSALKMSAGSDYVAT
LPGAPFGDGKIFDPLSFSDGAAPGDIKKWREAEIKHGRVAMLASLGILVA
EEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFALLGMAFVEYNTIMTAF
AQPSFVTGEGGLKEDYIPGDLGFDPLNIKPKTEEALDAMKTKELNNGRLA
MIGTAGMLVQELVNGQDILPNFFS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023329Chlorophyll_a/b-bd_dom_sf
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln