mRNA_Ecto-sp13_S_contig1417.3241.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1417.3241.1
Unique NamemRNA_Ecto-sp13_S_contig1417.3241.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1417.3241.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 400 bits (1028), Expect = 3.450e-137
Identity = 205/223 (91.93%), Postives = 211/223 (94.62%), Query Frame = 1 
Query:    1 MVASQMFLGTAAALIASSTAFIAPMAVRSAAPASSGSALKMSAGSDYVATLPGAPFGDGKIFDPLSFSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFALLGMAFVEYNTIMTAFAQPSFVTGEGGLKEDYIPGDLGFDPLNIKPKTEEALDAMKTKELNNGRLAMIGTAGMLVQELVNGQDILPNFF 669
            MVASQMFLGTAAALIASSTAF+AP+AVRSAAPAS+ SALKMSAGSDYVATLPGAPF DGKIFDPLS SDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAF+LLGMAF+EYNTIMTAF  PS VTGEGGLKEDYIPGDLGFDPLN+KP  E ALD MKTKELNNGRLAMIG AGML QELVNGQDILPNFF
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNFF 223
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BLAST of mRNA_Ecto-sp13_S_contig1417.3241.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 370 bits (950), Expect = 2.080e-125
Identity = 186/219 (84.93%), Postives = 202/219 (92.24%), Query Frame = 1 
Query:    1 MVASQMFLGTAAALIASSTAFIAPMAVRSAAPASSGSALKMSAGSDYVATLPGAPFGDGKIFDPLSFSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFALLGMAFVEYNTIMTAFAQPSFVTGEGGLKEDYIPGDLGFDPLNIKPKTEEALDAMKTKELNNGRLAMIGTAGMLVQELVNGQDIL 657
            MVA+Q+FLG+AA LIASSTAF+APMAVRSAAPASS SALKMSAGSDYVATLPGAPFGDGKIFDPL+ SDGA P DIKKWREAEIKHGRVAMLASLG+LVAE+YHPLFMG D+IGPA+ HFQEISAQ+PEFW F+LLGMAF+EYNTIMTAF  PS VTGEGGLKEDY+PGDLGFDPLN+KP+ E ALD MKTKELNNGRLAMIG AGMLVQEL+N  DIL
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219
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BLAST of mRNA_Ecto-sp13_S_contig1417.3241.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 352 bits (903), Expect = 2.910e-118
Identity = 176/216 (81.48%), Postives = 196/216 (90.74%), Query Frame = 1 
Query:   10 SQMFLGTAAALIASSTAFIAPMAVRSAAPASSGSALKMSAGSDYVATLPGAPFGDGKIFDPLSFSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFALLGMAFVEYNTIMTAFAQPSFVTGEGGLKEDYIPGDLGFDPLNIKPKTEEALDAMKTKELNNGRLAMIGTAGMLVQELVNGQDIL 657
            S MFLGTAA LIASSTAF+APMAVRSAAPASS SALKMSAGSDYVATLPGAPFGDGKIFDPL  SDGA PG+IK WREAEIKHGRVAMLA++G++VAE+YHPLFMG D+IGPA+ HFQEISAQFPEFWAF+LLGMAF+EYNTI  A+A+PS VTGEGGL+++Y PGDLGFDPLN+KPK +  L+ M+TKELNNGRLAMIG AGMLVQELVN  DIL
Sbjct:    5 SNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 220
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BLAST of mRNA_Ecto-sp13_S_contig1417.3241.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 318 bits (816), Expect = 3.990e-105
Identity = 160/216 (74.07%), Postives = 187/216 (86.57%), Query Frame = 1 
Query:   10 SQMFLGTAAALIASSTAFIAPMAVRSAAPASSGSALKMSAGSDYVATLPGAPFGDGKIFDPLSFSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFALLGMAFVEYNTIMTAFAQPSFVTGEGGLKEDYIPGDLGFDPLNIKPKTEEALDAMKTKELNNGRLAMIGTAGMLVQELVNGQDIL 657
            S MFLGTAA LIASS AF+ PMAVRSAAPASS SALKMSAG+DY+ATLPGA   +GKIFD L  +DGA PG+IK WREAEIKHGRVAMLA++G++VAE+YHP FMG D+IGPA+ HFQEI+A+FP+FWA++LLGMAF+EYNTI  A+A+PS VTGEGGL+++Y PGDLGFDP  IKPK +  L+ M+ KELNNGRLAMIG  GMLVQELVNGQDIL
Sbjct:    5 SNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDIL 217
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BLAST of mRNA_Ecto-sp13_S_contig1417.3241.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 295 bits (756), Expect = 1.950e-96
Identity = 160/219 (73.06%), Postives = 168/219 (76.71%), Query Frame = 1 
Query:    1 MVASQMFLGTAAALIASSTAFIAPMAVRSAAPASSGSALKMSAGSDYVATLPGAPFGDGKIFDPLSFSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFALLGMAFVEYNTIMTAFAQPSFVTGEGGLKEDYIPGDLGFDPLNIKPKTEEALDAMKTKELNNGRLAMIGTAGMLVQELVNGQDIL 657
            MVASQMF+GTAA LIASSTAF+APMAVRS     S   LKMSAGSDYVATLPGAPF DGKIFDPL  SDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE                            FWAF+LLGMAF+EYNTIMTAF  PS VTGEGGLKEDY+PGDLGFDPLN+KP  E ALD MKTKELNNGRLAMIG AGML QELVN  DIL
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 191
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BLAST of mRNA_Ecto-sp13_S_contig1417.3241.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 282 bits (722), Expect = 3.090e-91
Identity = 136/160 (85.00%), Postives = 144/160 (90.00%), Query Frame = 1 
Query:  178 KIFDPLSFSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFALLGMAFVEYNTIMTAFAQPSFVTGEGGLKEDYIPGDLGFDPLNIKPKTEEALDAMKTKELNNGRLAMIGTAGMLVQELVNGQDIL 657
            +IFDPL  SDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE+YHP FMG D+IGPA+ HFQEISAQFPEFWAF+LLGMAFVEYNTIMTAF  PS VTGEGGLKEDYIPGDLGFDPLN+KP  E ALD MKTKELNNGRLAMIG AGML QELVN  DIL
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195
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BLAST of mRNA_Ecto-sp13_S_contig1417.3241.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 285 bits (728), Expect = 2.320e-89
Identity = 182/391 (46.55%), Postives = 196/391 (50.13%), Query Frame = 1 
Query:    1 MVASQMFLGTAAALIASSTAFIAPMAVRSAAPAS-SGSALKMSAGSDYVATLPGAPFGDGK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFDPLSFSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFALLGMAFVEYNTIMTAFAQPSFVTGEGGLKEDYIPGDLGFDPLNIKPKTEEALDAMKTKELNNGRLAMIGTAGMLVQELVNGQDIL 657
            MVASQMF+GTAA LIASSTAF+AP+AVRS A  + S S+L MSAGSDYVATLPGAPF DGK                                                                                                                                                                           IFDPL  SDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE+YHP FMG D+IGPA+ HFQEISAQFPEFWAF+LLGMAF+EYNTIMTAF  PS VTGEGGLKEDY+PGDLGFDPLN+KP  E ALD MKTKELNNGRLAMIG AGML QELVN  DIL
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 391
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BLAST of mRNA_Ecto-sp13_S_contig1417.3241.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 2.180e-81
Identity = 121/160 (75.62%), Postives = 139/160 (86.88%), Query Frame = 1 
Query:  178 KIFDPLSFSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFALLGMAFVEYNTIMTAFAQPSFVTGEGGLKEDYIPGDLGFDPLNIKPKTEEALDAMKTKELNNGRLAMIGTAGMLVQELVNGQDIL 657
            KIFDPL  +DGA  GDIK WREAEIKHGRVAMLASLG+LVAEEYHP FMG D+IGPA+ HFQEISA+FPEFWAF+LL +A +EYNTI  A+A+PSFVTGEGGL+++Y PGDLGFDPLN+KP  + AL+ M+TKELNNGRLAMIG AG LVQELVN  +IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
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BLAST of mRNA_Ecto-sp13_S_contig1417.3241.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 1.360e-79
Identity = 131/206 (63.59%), Postives = 159/206 (77.18%), Query Frame = 1 
Query:   25 GTAAALIASSTAFIAPMAVR-SAAPASSGSALKMSAGSDYVATLPGAPFGDGKIFDPLSFSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFALLGMAFVEYNTIMTAFAQPSFVTGEGGLKEDYIPGDLGFDPLNIKPKTEEALDAMKTKELNNGRLAMIGTAGMLVQELV 639
            G A+   AS  AFI P     SA P S+  A +MSAGSDYV+TLPGAPF DGK++DP+  S  A P DIKKWREAEIKHGRVAMLAS+G+LVAE +HPLF+G D+IGPAI HF+EI+A+FP+FWA  LL +A++EY  I   FA+   VTGEGG++ DY+PGDLGFDPL + P+ E  L+ MKTKELN+GRLAMIG  GM+VQELV
Sbjct:   61 GMASWCFASCEAFIVPTPTTLSARPTST--AARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELV 264
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BLAST of mRNA_Ecto-sp13_S_contig1417.3241.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 3.050e-70
Identity = 126/229 (55.02%), Postives = 162/229 (70.74%), Query Frame = 1 
Query:    1 MVASQMFLGTAAALIASSTAFIAPMAV--RSAAPASSGSALKMSAGSDYVATLPGAPFG---DGKIFDPLSFSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFALLGMAFVEYNTIMTAFAQPSFVTGEGGLKEDYIPGDLGFDPLNIKPKTEEALDAMKTKELNNGRLAMIGTAGMLVQELVNGQDILPNFFS 672
            MV SQ+FLGTAA LIASS AF+AP+A    S A  ++ S  KM+AGSDY A+LPGAPFG   +GK FDP   +    P  IKKWREAE+KHGRV+MLA++GILV+E +HPLFMG  +IGPA+ H Q+I+  +P FW  +L  +AF+E  TI  A+   S VTG G LK +Y PGDLGFDPL + PK  E    ++++EL+ GR AMIG  GM+VQE+V+G+ IL +  S
Sbjct:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHIVS 229
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1417.3241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q9_ECTSI3.450e-13791.93Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7Q6_ECTSI2.080e-12584.93Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI2.910e-11881.48Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S0_ECTSI3.990e-10574.07Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5K8D0_9PHAE1.950e-9673.06LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D7G7S5_ECTSI3.090e-9185.00Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JWB4_9PHAE2.320e-8946.55LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G7Q7_ECTSI2.180e-8175.63Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G5B4_ECTSI1.360e-7963.59Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7FQG7_ECTSI3.050e-7055.02Light harvesting complex protein n=2 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1417contigEcto-sp13_S_contig1417:2925..5894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score403.3
Seed ortholog evalue7.5e-110
Seed eggNOG ortholog2880.D7G7Q9
Model size1238
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
Hectar predicted targeting categorychloroplast
Exons4
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-06_000710.1
Cds size675
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462757.072703-CDS-Ecto-sp13_S_contig1417:2924..31041681462757.072703-CDS-Ecto-sp13_S_contig1417:2924..3104Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1417 2925..3104 +
1681462757.0904877-CDS-Ecto-sp13_S_contig1417:3884..40071681462757.0904877-CDS-Ecto-sp13_S_contig1417:3884..4007Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1417 3885..4007 +
1681462757.101925-CDS-Ecto-sp13_S_contig1417:4572..46561681462757.101925-CDS-Ecto-sp13_S_contig1417:4572..4656Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1417 4573..4656 +
1681462757.1110709-CDS-Ecto-sp13_S_contig1417:5043..53311681462757.1110709-CDS-Ecto-sp13_S_contig1417:5043..5331Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1417 5044..5331 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462757.1196496-UTR-Ecto-sp13_S_contig1417:5331..58941681462757.1196496-UTR-Ecto-sp13_S_contig1417:5331..5894Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1417 5332..5894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1417.3241.1prot_Ecto-sp13_S_contig1417.3241.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1417 2925..5331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1417.3241.1

>prot_Ecto-sp13_S_contig1417.3241.1 ID=prot_Ecto-sp13_S_contig1417.3241.1|Name=mRNA_Ecto-sp13_S_contig1417.3241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=225bp
MVASQMFLGTAAALIASSTAFIAPMAVRSAAPASSGSALKMSAGSDYVAT
LPGAPFGDGKIFDPLSFSDGAAPGDIKKWREAEIKHGRVAMLASLGILVA
EEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFALLGMAFVEYNTIMTAF
AQPSFVTGEGGLKEDYIPGDLGFDPLNIKPKTEEALDAMKTKELNNGRLA
MIGTAGMLVQELVNGQDILPNFFS*
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mRNA from alignment at Ecto-sp13_S_contig1417:2925..5894+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1417.3241.1 ID=mRNA_Ecto-sp13_S_contig1417.3241.1|Name=mRNA_Ecto-sp13_S_contig1417.3241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2970bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1417:2925..5894+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTGCCTCCCAAATGTTCCTCGGCACTGCCGCCGCCCTCATCGCCTC
CTCGACTGCCTTCATCGCACCGATGGCCGTGCGATCTGCGGCACCGGCTT
CCTCTGGTTCGGCCCTCAAGATGAGCGCTGGGTCCGACTACGTCGCAACC
CTGCCCGGAGCTCCCTTCGGCGATGGAAAGGTGAAACATAGCCACCGAGT
GTAACGAAATAGCTGGTGTGAGTCTGATCTACACGCGATGCGAAAGGGCG
TGAGCGGTGAGTGGGTATGTACGCTTGGTCTACGTCTCATGTTTTTAACC
CGTAGTTCGTGGCACTCACGATGTCCGCACAAAAGAGAAAAGCAATCGGC
GACATGTTCAGCTTTGGGATTGGATAGCGTTGCGTGGCCTTGGACATGAG
TCGGCACTGTTGAGGTCTCTGCTCTCCTGTTCTGGTCCGGATCTGCCGTA
GATGTCATGATTTTATCTGCTGACTCATGAAAAGGTGAAAACTCGCTCTA
TTATGCTGAATGTATGCGTACGTGCTCTGTCCTGGCTCAGTTGTGACTTG
CACTGCTGTGCGACTATCGAAAAGGGCTACCGTCGGGTACCCAACCCCCC
CTGTACGGCTGATGATTTTCTCGGGATACTTTCTTTGCTGGTGTCGGGGA
GGCGCGCATTACGTTCTGATTGAGTACTTGGAGCTGTCGCGATGACGACT
GCTGTGACGAGCCATGTAGATTTGAGTCAGAAAAACTTACAATTTAGTGA
CTCGCCATAGGTGCCGTTTACGTCAACGGCTTTACACCTTGTTCGCAGCT
CACACTTCTCAGCACATCGTGCGCATGGCAATAATACTCCGACCGGGGTA
GACACGTAAGTAGACTGTGCGACCAGCGTGATCCCGTCAACGTTGGAGTA
TCTTGGTTCTAACTGTTTTTACCCGCTCGCAACGTTTCCTTCCGTTGATG
TGTATCCAAGATCTTCGACCCCCTGAGCTTCTCGGATGGCGCTGCCCCCG
GCGACATCAAGAAGTGGCGCGAGGCCGAGATCAAGCACGGGCGCGTGGCT
ATGCTTGCTTCCCTCGGGATTCTTGTCGCAGAGGTCAGCTCCTGTTCGAA
GTAGTATCGAGAGGTGACTGCAGAGCGCTCAAGGAAGTTGGTGTTTTGAA
CTCGCAAGTGTTAAATATTGTCGAGCGAGCTTCGGAACATTTGCAAATTG
CCATGTTTTCCTTAGGTTGATATTTCTTGGATACTACCGCAGTACTTCTA
AGGTTTGAAGTAAGAGGGCAGGTCCATCCAGCAATGAGGTTGGACATGGG
GGCGGCGGACAGCCTGTGATTCGACTCCGATACGTTTTCTCGAGACTTGC
TGAAAAAACTTGCGTTGAACACGAACACTGCTGTTGCACAAGTTCTTCTT
CTCCGCGTGAACTACGGACGCAGTACATACGTGCGATCCATCGTGTCGAT
GCAGCGTGTTTTTCGTGATCAAGCAGAGAAAATCGAGGTATGATAAGTTT
CAATCGAATGTTGAAAAGCGCATTTTTCTCGATATGTAGTCTTGCCTCGT
GCACCTTTTTTGTGAGAAGATCATCCACCTGTGGACTGGATGTGAAGTAG
AATGTGCTTACCCCTCCCGCATACCTCGACGTCCCGTGCCGTTCACAGGA
GTACCACCCTCTGTTCATGGGCAAAGATTTCATCGGCCCTGCCATTATCC
ACTTCCAGGAGATCTCTGCGCAGTTCCCCGAGGTATGAGGACTTTCGATG
TCTACAAGAACCAAGTATGCGCAGGTCCTATGTTTTCTTCCAGGAACAAA
AAGAAAGACACCGACGCGTTTCAACGAGGTACACGAGCCACTATTTTGCT
GCTCTCATTCATGGACCGCAGCGATGATAGCGATTGACTTTGGTGTCATT
TCTCTCCAATCACATCACGGTGCCGGAGACCGATCAGCACCCACGGCGAT
AGGTGATATGTGTTTGGTGCAAATATGACTCCTACTGCTTCCTCTTGCCT
CGCGCCGCACTATGTATGCAGTGTAACCGATCATCTCTTTTCGCTCACCT
GTTCCTCACTTCCCCCCTCACCCATATTGCATCCATTGTTTGTGCCCGAA
CAATCCGCCACGAAAACAGTTCTGGGCGTTTGCTCTGCTCGGGATGGCGT
TCGTCGAGTACAACACTATCATGACCGCTTTCGCCCAGCCAAGCTTCGTG
ACCGGCGAGGGCGGCCTGAAGGAGGACTACATCCCGGGAGACCTGGGCTT
CGACCCCCTCAACATCAAGCCCAAGACTGAGGAAGCCTTGGACGCGATGA
AGACCAAGGAGCTGAACAACGGCCGTCTGGCCATGATCGGCACCGCCGGC
ATGCTTGTCCAGGAGTTGGTTAACGGGCAGGACATCCTCCCCAACTTTTT
CTCGTAGATGCTGGGAGCCTCGTGGTTTCAAGACAGCCGTCTTGGTGTGT
GAACGTTTTTGGGATGCTTCCTTGAAATGGAGGTTCTGCCGGCTGCCGTA
GAATGGAGTTTCCGCCTTGATTCGCGCAGAGGAACCGCAGTCTACCTCCA
ACGGTGATAAATAATGGGCATGAGGAACTGGTGGTCCTGTGGGGTCGAGG
ACATCATTTCGTTCCACACCGGCTAGCGGTTCCTCCCTCAGGGTCGGTTG
TGGAGGCAGTTGGTCGTGGTCTCTTCTCAGGGGAGTGCGAGCATGCTACA
AGCACTTGCGGAATGGTTTTTACAGTTAAAGTTTGTTATCTGTTGCAGGC
TGATCGCTTGTTGTATCGCCTGTGTGACATCACGACAGGAGGGTAGCTGT
CGACGTGTAATAATCATAACCCCACACGGAGGTATGAGACTGGGGTGTTA
CGTTTTCAACGTGCTCATCATAATTTTGGTATCGAAATTGTGGTGATGGA
ATGAAACTATTCAAATCGCAGTGTGATTGCGTATTGCAATGTCGACCTGC
CGTGTCCTCCAGTCCAGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1417:2925..5894+

>mRNA_Ecto-sp13_S_contig1417.3241.1 ID=mRNA_Ecto-sp13_S_contig1417.3241.1|Name=mRNA_Ecto-sp13_S_contig1417.3241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=675bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1417:2925..5894+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTGCCTCCCAAATGTTCCTCGGCACTGCCGCCGCCCTCATCGCCTC
CTCGACTGCCTTCATCGCACCGATGGCCGTGCGATCTGCGGCACCGGCTT
CCTCTGGTTCGGCCCTCAAGATGAGCGCTGGGTCCGACTACGTCGCAACC
CTGCCCGGAGCTCCCTTCGGCGATGGAAAGATCTTCGACCCCCTGAGCTT
CTCGGATGGCGCTGCCCCCGGCGACATCAAGAAGTGGCGCGAGGCCGAGA
TCAAGCACGGGCGCGTGGCTATGCTTGCTTCCCTCGGGATTCTTGTCGCA
GAGGAGTACCACCCTCTGTTCATGGGCAAAGATTTCATCGGCCCTGCCAT
TATCCACTTCCAGGAGATCTCTGCGCAGTTCCCCGAGTTCTGGGCGTTTG
CTCTGCTCGGGATGGCGTTCGTCGAGTACAACACTATCATGACCGCTTTC
GCCCAGCCAAGCTTCGTGACCGGCGAGGGCGGCCTGAAGGAGGACTACAT
CCCGGGAGACCTGGGCTTCGACCCCCTCAACATCAAGCCCAAGACTGAGG
AAGCCTTGGACGCGATGAAGACCAAGGAGCTGAACAACGGCCGTCTGGCC
ATGATCGGCACCGCCGGCATGCTTGTCCAGGAGTTGGTTAACGGGCAGGA
CATCCTCCCCAACTTTTTCTCGTAG
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