mRNA_Ecto-sp13_S_contig1416.3237.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1416.3237.1 vs. uniprot
Match: A0A6H5KTC0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC0_9PHAE) HSP 1 Score: 348 bits (892), Expect = 1.250e-110 Identity = 297/496 (59.88%), Postives = 301/496 (60.69%), Query Frame = 1
Query: 190 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNSHLVQRLLELGADIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVEQRNSHRLTAYDVATDHVIRQFLLPLQLKAEAGNPDYAVNTMGITSDAAPRSYEHHGVPGMGSGXXXXXXXXXXXXXXXXXXXXX-SSMDAALGALMQAPTM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAEVFSGRPPFEDESLRPGPKAKANSSSSAGDGPSSPLMSTVDLSSKFQAQVAVSGAGAAASAVEGSFVGXXXXXXXXXXXXXXXGSEPNSAMVGAAPPPSV 1137
MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRGVRPMHMACQTGN+HLVQRLLELGADIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVEQRNS+RLTAYDVATDHVIRQFLLPLQLKAEAGNPDYAVNTMGITSDAAPRSYEHHGVPGMGS XXXXXXXXXXXXXXXXXXX SSMDAALGALMQAPTM A E FSGRPPFEDESLRPG +AKANSSSS GDGPSSPLMSTVDLSSKFQAQVAVSGAGA A+AVEGSFVG XXXXXX XXXXX GSEPN A GAAPPPSV
Sbjct: 1 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNNHLVQRLLELGADIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVEQRNSYRLTAYDVATDHVIRQFLLPLQLKAEAGNPDYAVNTMGITSDAAPRSYEHHGVPGMGSXXXXXXXXXXXXXXXXXXXXGGASSMDAALGALMQAPTMVPLAPRPGAGMAGPPPMXXXXXXXXXXXXVYPPGPAGFPGAQQPGSYSPPGEGXXXXXYPAPPGASPPAATGSLPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGKTEVASPAPKGDLAGTGPPDAAAAAAATGGPRSFPGVAVQLAAXXXXXXXXXXXXXSPAAAPKAGEDFSGRPPFEDESLRPGAEAKANSSSSPGDGPSSPLMSTVDLSSKFQAQVAVSGAGAGAAAVEGSFVGGXXXXXXPVXXXXXHGSEPNCATAGAAPPPSV 496
BLAST of mRNA_Ecto-sp13_S_contig1416.3237.1 vs. uniprot
Match: D7FP01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP01_ECTSI) HSP 1 Score: 205 bits (522), Expect = 8.120e-62 Identity = 137/142 (96.48%), Postives = 138/142 (97.18%), Query Frame = 1
Query: 190 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNSHLVQRLLELGADIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVEQRNSHRLTAYDVATDHVIRQFLLPLQLK 615
MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRGVRPMHMACQTGN+HLVQRLLELGADII XXXXXXXXXXXXXXXXXXXXXXXXXX A VEQRNSHRLTAYDVATDHVIRQFLLPLQLK
Sbjct: 1 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNNHLVQRLLELGADIITXXXXXXXXXXXXXXXXXXXXXXXXXXQGAAVEQRNSHRLTAYDVATDHVIRQFLLPLQLK 142
BLAST of mRNA_Ecto-sp13_S_contig1416.3237.1 vs. uniprot
Match: A0A835YRJ6_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ6_9STRA) HSP 1 Score: 128 bits (322), Expect = 9.520e-32 Identity = 95/151 (62.91%), Postives = 115/151 (76.16%), Query Frame = 1
Query: 190 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRGVRPMHMACQTGNSHLVQRLLELGADIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVEQRNSHRLTAYDVATDHVIRQFLLPLQLKAEAGNPDYA 642
MFNFL QG +G+++AP+QS E QLLIAIQNRQ DK + ++ + NTA D GV P+HMACQ G L++RL ELG D+ XXXXXXXXXXXXXXXXXXXXXXXXX V+ RN+ R + YD+AT+HV+RQ+LLPLQLKAEA NP A
Sbjct: 1 MFNFLFQGNLGDIIAPIQSPEQQLLIAIQNRQMDKAKAMVCMYACLRNTAVDSGVTPVHMACQAGLQELLRRLAELGGDLAGADNXXXXXXXXXXXXXXXXXXXXXXXXXXXVDARNASRQSPYDLATNHVVRQYLLPLQLKAEASNPSSA 151
BLAST of mRNA_Ecto-sp13_S_contig1416.3237.1 vs. uniprot
Match: A0A4D9DC57_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DC57_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 9.430e-17 Identity = 61/159 (38.36%), Postives = 86/159 (54.09%), Query Frame = 1
Query: 190 MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRG---VRPMHMACQTGNSHLVQRLLELGADIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-PVEQRNSHRLTAYDVATDHVIRQFLLPLQLKAEAGNPDYAVNTM 654
MF FL QG +GE++APV++ QL AI+ + DK +LL+ +GV N A D G P+H ACQ GN ++ +L+E+GAD+ V +RN++R TAYDVA H++RQFLLPLQL+ E P+ A T+
Sbjct: 1 MFAFLSQGPLGELLAPVKAPHQQLHQAIEEHRHDKANQLLQ-EGVYFN-APDAGRGDALPIHTACQAGNQMMIDKLMEMGADVRSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRTE---PEPAAGTL 154
BLAST of mRNA_Ecto-sp13_S_contig1416.3237.1 vs. uniprot
Match: W7TGZ7_9STRA (Serine threonine-protein phosphatase 6 regulatory n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGZ7_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 1.440e-16 Identity = 59/150 (39.33%), Postives = 82/150 (54.67%), Query Frame = 1
Query: 184 TAMFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTANDRG---VRPMHMACQTGNSHLVQRLLELGADIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-PVEQRNSHRLTAYDVATDHVIRQFLLPLQLKAE 621
+ MF FL QG +GE++APV++ QL AI+ + DK +LL+ +GV N A D G P+H ACQ GN ++ +L+E+GAD V +RN++R TAYDVA H++RQFLLPLQL+AE
Sbjct: 20 SGMFAFLSQGPLGELLAPVKAPHQQLHQAIEEHRHDKANQLLQ-EGVYFN-APDAGRGDALPIHTACQAGNQTMIDKLMEMGADARSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRAE 167
BLAST of mRNA_Ecto-sp13_S_contig1416.3237.1 vs. uniprot
Match: A0A7S3JRB0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRB0_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 9.330e-8 Identity = 48/144 (33.33%), Postives = 71/144 (49.31%), Query Frame = 1
Query: 205 LQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLE---VKGVGANTANDRGVRPMHMACQTGNSHLVQRLLELGADI-IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVEQRNSHRLTAYDVATDHVIRQFLLPLQLKAEA 624
L ++GE++APVQ++ +L I+I+ R + ELL V +G N + D + P+H+AC V+ LL GAD+ + A + RN+ T YDVA D +RQ+LLPLQL+AEA
Sbjct: 12 LLNRIGEVVAPVQNENQELFISIRRRDWPRTHELLSSPNVDALGKNGSVD--MTPLHVACAEDFVQCVEYLLVNGADVNVRDTRAHETPLHHGARGGHSRVCRLLVERGASLVARNARNQTPYDVAKDLSLRQWLLPLQLRAEA 153 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1416.3237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1416.3237.1 >prot_Ecto-sp13_S_contig1416.3237.1 ID=prot_Ecto-sp13_S_contig1416.3237.1|Name=mRNA_Ecto-sp13_S_contig1416.3237.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=340bp MFNFLLQGKVGEMMAPVQSQEAQLLIAIQNRQQDKIRELLEVKGVGANTAback to top mRNA from alignment at Ecto-sp13_S_contig1416:11117..17298+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1416.3237.1 ID=mRNA_Ecto-sp13_S_contig1416.3237.1|Name=mRNA_Ecto-sp13_S_contig1416.3237.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6182bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1416:11117..17298+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1416:11117..17298+ >mRNA_Ecto-sp13_S_contig1416.3237.1 ID=mRNA_Ecto-sp13_S_contig1416.3237.1|Name=mRNA_Ecto-sp13_S_contig1416.3237.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1020bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1416:11117..17298+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |