mRNA_Ecto-sp13_S_contig1416.3236.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1416.3236.1
Unique NamemRNA_Ecto-sp13_S_contig1416.3236.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1416.3236.1 vs. uniprot
Match: D7FP02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP02_ECTSI)

HSP 1 Score: 530 bits (1364), Expect = 1.050e-188
Identity = 277/311 (89.07%), Postives = 283/311 (91.00%), Query Frame = 1 
Query:    1 MLVTP-LNDAVFKDTVAKHGSFPVRASERSAYVIDGLAAGQAYDVFFVVEGLKGVRSSLPINDDLESDTWYQVSAVSERAEGVYSQPVYAVAKTHREPARVLDWKTTPVHGSTDSLSLLISLDCSSAPTHEACGILRYEVTEKPPKGSPENAKSRQVAQGTAVVADGRTTPHVVSGLSPGKAHSISMAIETPGSNGAYGPTMEVVATTFPRAPRLVTLDAARSDTEASTVIVRYKISEARREHFLLARMPSIMRPGVIHVSLVERVGHPLALIGTMIGNQHGVGFSVEVGMSSGDDEEEQGSDAALEGSQV 930
            MLV P LNDAVFKDTVAKHGSFPVRASERSAYVIDGLAAGQAYDVFFV+EGLKGVRS LPINDDLESDTWYQVSAVSERAEGVYSQP YAVAKTHREPARVLDWK TPVHGSTDSLSLLI LDCSSAPTHEACG LRYEVTEKPPKGSP NAK RQVAQGTAVVADGR TPHVVSGLSPGKAHSISMAIETPGSNGAYGPTMEV ATTFPRAPRLVTLDAARSDTEASTVIVRYK+SE                PGV+HVSLVERVGHPLALIGTMIGNQHGVGFSVEVGMS+GD+EEE GSD+ALEGSQV
Sbjct:    1 MLVAPSLNDAVFKDTVAKHGSFPVRASERSAYVIDGLAAGQAYDVFFVIEGLKGVRSPLPINDDLESDTWYQVSAVSERAEGVYSQPAYAVAKTHREPARVLDWKATPVHGSTDSLSLLIRLDCSSAPTHEACGTLRYEVTEKPPKGSPANAKPRQVAQGTAVVADGRLTPHVVSGLSPGKAHSISMAIETPGSNGAYGPTMEVAATTFPRAPRLVTLDAARSDTEASTVIVRYKLSE----------------PGVVHVSLVERVGHPLALIGTMIGNQHGVGFSVEVGMSAGDEEEEDGSDSALEGSQV 295
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1416.3236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP02_ECTSI1.050e-18889.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1416contigEcto-sp13_S_contig1416:7233..10107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size942
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_005000.1
Cds size942
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462756.6440039-CDS-Ecto-sp13_S_contig1416:7232..74151681462756.6440039-CDS-Ecto-sp13_S_contig1416:7232..7415Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1416 7233..7415 -
1681462756.6534216-CDS-Ecto-sp13_S_contig1416:7817..80361681462756.6534216-CDS-Ecto-sp13_S_contig1416:7817..8036Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1416 7818..8036 -
1681462756.663513-CDS-Ecto-sp13_S_contig1416:8202..83351681462756.663513-CDS-Ecto-sp13_S_contig1416:8202..8335Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1416 8203..8335 -
1681462756.679136-CDS-Ecto-sp13_S_contig1416:8654..89141681462756.679136-CDS-Ecto-sp13_S_contig1416:8654..8914Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1416 8655..8914 -
1681462756.6893513-CDS-Ecto-sp13_S_contig1416:9960..101071681462756.6893513-CDS-Ecto-sp13_S_contig1416:9960..10107Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1416 9961..10107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1416.3236.1prot_Ecto-sp13_S_contig1416.3236.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1416 7233..10107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1416.3236.1

>prot_Ecto-sp13_S_contig1416.3236.1 ID=prot_Ecto-sp13_S_contig1416.3236.1|Name=mRNA_Ecto-sp13_S_contig1416.3236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=314bp
MLVTPLNDAVFKDTVAKHGSFPVRASERSAYVIDGLAAGQAYDVFFVVEG
LKGVRSSLPINDDLESDTWYQVSAVSERAEGVYSQPVYAVAKTHREPARV
LDWKTTPVHGSTDSLSLLISLDCSSAPTHEACGILRYEVTEKPPKGSPEN
AKSRQVAQGTAVVADGRTTPHVVSGLSPGKAHSISMAIETPGSNGAYGPT
MEVVATTFPRAPRLVTLDAARSDTEASTVIVRYKISEARREHFLLARMPS
IMRPGVIHVSLVERVGHPLALIGTMIGNQHGVGFSVEVGMSSGDDEEEQG
SDAALEGSQVNEA*
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mRNA from alignment at Ecto-sp13_S_contig1416:7233..10107-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1416.3236.1 ID=mRNA_Ecto-sp13_S_contig1416.3236.1|Name=mRNA_Ecto-sp13_S_contig1416.3236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2875bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1416:7233..10107- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGGTCACCCCACTGAACGATGCGGTCTTCAAGGACACTGTGGCAAA
GCACGGCTCGTTTCCCGTGCGGGCGAGCGAGCGGAGCGCGTACGTCATTG
ATGGCTTGGCTGCCGGGCAGGCTTACGATGTGTTCTTCGTCGTCGAGGTG
TGCCCAACACCAGATGCCAATGCACACACGAAAGGATTGAAGGCGTCACT
TTGGCCGAGAAGGATTTTTGGGGCGCACATCAAATTGTTCACAATCTCTG
GAAAGTGGTGCTGAGCAGAAATATATCTGATGGCCTTGGATACCGATTTT
AGCGAAGGGTTCCTACATGTACCATCATTAATATCCTGCCGTCTCGTATC
TTCTGCGATCTTCACCCCACCCAGCCTTTGACTCCACTTCTCATTCTATT
ATAGGCAGCAAACAGCAACGGCCTCTTCAGCCCAATTGGTCGAGTACTCG
GCGTGTCAACAAACATGCTAGCGCCTAACATTTCCGCTCTCAGCCTGGCC
CCGGTAGACGCCCGGACGAACTCTACGCAGCTGTCGCTCTCCATGGACGC
TGCTGGCGTGCCCTGTCGCGTATGGTACGCAATACAACCTTTGCAAGATT
CAGTGCTCCTCACGCTGGACAAAATCTCTGCTGAGGAGATAGTGGAAGCA
GCTCTACCGGAGAGCGTTGTGGACCTTCGGCAGGCAAGTGTAGCAGAGAG
TGTGGTGACCACGTAATCCCCTTGAGGGTGGTGATGCTCACCTAGCCCCT
CAAGATAGTGCACAAGCCATGCTCAAGGGTTGGAGATCTCGGCAACAAAG
AGAATAACTATAGGTCAAAGGTTTGCATCCGGGAAAGGTTTAGCTGGAAA
ACGCTGATCTGTTCAGTCTGAAGATGTCATTGTTTACGGTTGGGTGTGTG
CGAGTAATGCGTCGCATACCTCCAGCGAGCAAGCGAGGCCATAGCTACAA
TGTAGCTGTCGTGCTGGAGAGATTCGAGGCAGGACTCCACAGCAAGCACC
CATATCGTCACCCTTGACGTGAAGCAGACACATGTTGAGTCCAAAGTTGC
GCAGCCATACTGAGTAGACATGCTGCTATTCTTTCTGGCCCAGGTCCGGA
CCAGCAACTTGTGTTTCCCAAACTGGGTTATCTCCTAGGGCTCTTTCATG
TAGTCTCTCATGCGTCTCTTCTCCCCTTTCACCGATCGGTCAGGGTCTAA
AAGGCGTGCGCTCCTCCCTTCCGATCAATGACGATCTGGAGAGTGATACC
TGGTATCAGGTATCAGCGGTGTCCGAGCGCGCGGAAGGCGTTTACAGCCA
GCCAGTCTACGCCGTAGCCAAGACCCACCGAGAGCCGGCAAGAGTACTCG
ACTGGAAAACCACGCCAGTTCATGGCTCTACCGATTCCCTATCATTGCTC
ATAAGCCTGGACTGCTCCTCAGCACCCACACACGAGGCTTGCGGGATTTT
GAGGTGCGGAGAGAATGTTGGTGCGACAGAACTAACGGCAACAGTAGTAG
ATTGAAGCTGGTACGGGAACAAATGTCGGACAGCAGGAGAATGCGCAATT
GTGGCGGTAAATGCGATACCTCCGGCGATGTGGCGTGAGGATCATGCCGA
GAAAATGCCCTAGAACGGTATCTGTGCTGCGGCCCGAAGCACATGCTCTC
ACGTATCATCGCCCGGTTGCCGACTGTCTGTATCTTGTTAATCCCTCAAC
GAGACTTGCACGCTCATCCTCTACGTGCCTTACATGTCTGTTTCACCGCA
TGTGTGCCGCCACCCGCGTCAGGTATGAAGTGACCGAAAAGCCGCCCAAG
GGATCCCCAGAGAACGCCAAGTCTCGCCAAGTTGCTCAAGGCACGGCGGT
GGTTGCTGATGGACGCACAACACCTCATGTGGTATCCGGGTTGTCACCAG
GGAAGGTGCGGTGGCGTTCCAATATTTCTTTCTCCTTTCGATTTCCAGTT
AATAACCCGCCTTGCCTCGCCAGCGGAGTGCTACTTGAACTTATGATTCA
TCGCTCAGCCCCGGTACACCCGCCAACTTTCAACACACACGACAATTTTT
TAATGTACCCCACCGTCTAAGGCCCACTCGATTTCAATGGCGATCGAGAC
TCCGGGTTCCAACGGGGCGTATGGTCCGACCATGGAGGTGGTCGCGACTA
CATTCCCGCGCGCACCCAGGCTCGTCACGCTAGACGCAGCGAGGTCTGAC
ACCGAGGCGTCCACGGTGATTGTGCGGTACAAAATTTCCGAGGCAAGGCG
AGAGCATTTCTTATTAGCTCGTATGCCTTCGATTATGAGAGTGCGCCCAT
TGCTGCCGCTACGCGGCTGCTGCTACGGCGGCTGCTGCTACAGCGGCGGC
TATGTTTGTCAATAGCCGAAAGTTTTCATCCAGCATTATTGCGTGTGCCG
CGGGGAGTTCTTGTAGTTCAGAAAAAGAGTGAGGAAACCGTCCTGTCATG
GGCCTGTTGGGAGTTAACCCCGCTGGAAAGCCCTCCTAGGGGAAAGTCTC
CAATCGTCCTTTTGGTAGTTTCGCGAATGGGCGAAAGAGAATTCTCAGAG
AGAGAAAGAGGAAAATGGGGAGGGGGCGAAAGAGGAGACTCGTACAGAGC
ACTTGAAAGGAGATGAAACTCTGATGGAGAGAGAGCTTTACCAATGTTCC
CTCGTTCCATCCCTTCCTTGGAATTCAAAACACGGGCAACAGCCTGGTGT
GATACATGTCAGTCTTGTCGAGAGGGTAGGCCACCCCTTGGCCTTGATCG
GGACCATGATCGGGAACCAGCATGGTGTGGGCTTCTCTGTGGAAGTGGGC
ATGTCATCAGGCGACGACGAGGAGGAGCAAGGATCCGACGCAGCCTTGGA
AGGATCACAGGTGAACGAAGCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1416:7233..10107-

>mRNA_Ecto-sp13_S_contig1416.3236.1 ID=mRNA_Ecto-sp13_S_contig1416.3236.1|Name=mRNA_Ecto-sp13_S_contig1416.3236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=942bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1416:7233..10107- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGGTCACCCCACTGAACGATGCGGTCTTCAAGGACACTGTGGCAAA
GCACGGCTCGTTTCCCGTGCGGGCGAGCGAGCGGAGCGCGTACGTCATTG
ATGGCTTGGCTGCCGGGCAGGCTTACGATGTGTTCTTCGTCGTCGAGGGT
CTAAAAGGCGTGCGCTCCTCCCTTCCGATCAATGACGATCTGGAGAGTGA
TACCTGGTATCAGGTATCAGCGGTGTCCGAGCGCGCGGAAGGCGTTTACA
GCCAGCCAGTCTACGCCGTAGCCAAGACCCACCGAGAGCCGGCAAGAGTA
CTCGACTGGAAAACCACGCCAGTTCATGGCTCTACCGATTCCCTATCATT
GCTCATAAGCCTGGACTGCTCCTCAGCACCCACACACGAGGCTTGCGGGA
TTTTGAGGTATGAAGTGACCGAAAAGCCGCCCAAGGGATCCCCAGAGAAC
GCCAAGTCTCGCCAAGTTGCTCAAGGCACGGCGGTGGTTGCTGATGGACG
CACAACACCTCATGTGGTATCCGGGTTGTCACCAGGGAAGGCCCACTCGA
TTTCAATGGCGATCGAGACTCCGGGTTCCAACGGGGCGTATGGTCCGACC
ATGGAGGTGGTCGCGACTACATTCCCGCGCGCACCCAGGCTCGTCACGCT
AGACGCAGCGAGGTCTGACACCGAGGCGTCCACGGTGATTGTGCGGTACA
AAATTTCCGAGGCAAGGCGAGAGCATTTCTTATTAGCTCGTATGCCTTCG
ATTATGAGACCTGGTGTGATACATGTCAGTCTTGTCGAGAGGGTAGGCCA
CCCCTTGGCCTTGATCGGGACCATGATCGGGAACCAGCATGGTGTGGGCT
TCTCTGTGGAAGTGGGCATGTCATCAGGCGACGACGAGGAGGAGCAAGGA
TCCGACGCAGCCTTGGAAGGATCACAGGTGAACGAAGCTTGA
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