mRNA_Ecto-sp13_S_contig14158.3234.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14158.3234.1
Unique NamemRNA_Ecto-sp13_S_contig14158.3234.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14158.3234.1 vs. uniprot
Match: A0A6H5KBR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR3_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 1.320e-66
Identity = 116/127 (91.34%), Postives = 120/127 (94.49%), Query Frame = 3 
Query:   66 PDT*LSSPRRGVQGRAAAAPRPPLTTVVDNNKRGRSSRRTSTARGRKASYSSRQGKGPKRTSVSALEESDLEDSTSEFHPFDC*ADTDSDDECTLDTHDDPPSPDLLAEPKRRKPGPPMRFVDDSPR 446
            P + +SS  RGVQGRAAAAPRPPLTTVVDNN+RGRSSRRTSTARGRKASYSSRQGKGPKRTSVSALEESDLEDS SEFHP DC ADTDSDDECTLDTHDDPPSPDLLA+PKRRKPGPPMRFVDDSPR
Sbjct:    4 PSSPVSSSHRGVQGRAAAAPRPPLTTVVDNNERGRSSRRTSTARGRKASYSSRQGKGPKRTSVSALEESDLEDSASEFHPSDCQADTDSDDECTLDTHDDPPSPDLLAKPKRRKPGPPMRFVDDSPR 130
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BLAST of mRNA_Ecto-sp13_S_contig14158.3234.1 vs. uniprot
Match: A0A6H5KXB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXB1_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 1.920e-53
Identity = 102/123 (82.93%), Postives = 108/123 (87.80%), Query Frame = 3 
Query:   78 LSSPRRGVQGRAAAAPRPPLTTVVDNNKRGRSSRRTSTARGRKASYSSRQGKGPKRTSVSALEESDLEDSTSEFHPFDC*ADTDSDDECTLDTHDDPPSPDLLAEPKRRKPGPPMRFVDDSPR 446
            + S RR VQGRAAAA R PLTTV+DNN RGRSSRRTST R R+ASYSSRQGK PKRTS++ALEESDLEDS SEFHP DC ADTDSDDECTLDT  D PSPDLLA+PKRRKPGPPMRFVDDSPR
Sbjct:    1 MPSLRRSVQGRAAAASRQPLTTVIDNNDRGRSSRRTSTTRARQASYSSRQGKRPKRTSIAALEESDLEDSASEFHPSDCQADTDSDDECTLDTSGDSPSPDLLAKPKRRKPGPPMRFVDDSPR 123
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BLAST of mRNA_Ecto-sp13_S_contig14158.3234.1 vs. uniprot
Match: A0A6H5JMJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMJ4_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 4.680e-49
Identity = 94/123 (76.42%), Postives = 102/123 (82.93%), Query Frame = 3 
Query:   78 LSSPRRGVQGRAAAAPRPPLTTVVDNNKRGRSSRRTSTARGRKASYSSRQGKGPKRTSVSALEESDLEDSTSEFHPFDC*ADTDSDDECTLDTHDDPPSPDLLAEPKRRKPGPPMRFVDDSPR 446
            + S RR VQGRAAAA R PL TV++NN RGRSSRRTST R R+A YSSRQGK PKRTS++ALEESDLED  SEFHP DC ADTDSD ECTLD+  D P PDLLA+PKRRKPGP MRFVDDSPR
Sbjct:    1 MPSSRRSVQGRAAAASRLPLITVINNNDRGRSSRRTSTTRARQAPYSSRQGKRPKRTSIAALEESDLEDFASEFHPSDCQADTDSDVECTLDSSGDSPRPDLLAKPKRRKPGPQMRFVDDSPR 123
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BLAST of mRNA_Ecto-sp13_S_contig14158.3234.1 vs. uniprot
Match: A0A6H5JDQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ8_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 6.830e-27
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = -3 
Query:  257 RGLSSTKRIGGPGFLRLGSARRSGLGGSSWVSSVHSSSLSVSA*QSKGWNSDVESSRSDSSKA 445
            RGLSSTKRIGGPGFLRLG ARRSGLGGSSWVSSVHSSSLSVSA QS+GWNSD ESSRSDS ++
Sbjct:   28 RGLSSTKRIGGPGFLRLGLARRSGLGGSSWVSSVHSSSLSVSAWQSEGWNSDAESSRSDSCES 90
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BLAST of mRNA_Ecto-sp13_S_contig14158.3234.1 vs. uniprot
Match: A0A6H5JR88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR88_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 7.020e-10
Identity = 45/83 (54.22%), Postives = 57/83 (68.67%), Query Frame = 3 
Query:  213 YSSRQGKGPKRTSVSALEES---DLEDSTSEFHPFDC*ADTDSDDE-CTLDTHD-DPPSPDLLAEPKRRKPGPPMRFVDDSPR 446
            Y+S+QGKG K+ S +A E+S     EDS SE+ P        SDDE CTLD ++ D PSPDLLA  KRR+PGPP+R++D SPR
Sbjct:   56 YTSKQGKGAKKISRAASEDSGRESYEDSGSEYDPTAA-----SDDESCTLDPNEEDSPSPDLLAPAKRRRPGPPLRYIDHSPR 133
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14158.3234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KBR3_9PHAE1.320e-6691.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXB1_9PHAE1.920e-5382.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMJ4_9PHAE4.680e-4976.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDQ8_9PHAE6.830e-2788.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR88_9PHAE7.020e-1054.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14158contigEcto-sp13_S_contig14158:431..2885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size450
Hectar predicted targeting categoryother localisation
Exons3
Cds size447
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462756.438268-CDS-Ecto-sp13_S_contig14158:431..6121681462756.438268-CDS-Ecto-sp13_S_contig14158:431..612Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14158 432..612 -
1681462756.4541955-CDS-Ecto-sp13_S_contig14158:2420..26081681462756.4541955-CDS-Ecto-sp13_S_contig14158:2420..2608Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14158 2421..2608 -
1681462756.470185-CDS-Ecto-sp13_S_contig14158:2807..28851681462756.470185-CDS-Ecto-sp13_S_contig14158:2807..2885Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14158 2808..2885 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14158.3234.1prot_Ecto-sp13_S_contig14158.3234.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14158 432..2885 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14158.3234.1

>prot_Ecto-sp13_S_contig14158.3234.1 ID=prot_Ecto-sp13_S_contig14158.3234.1|Name=mRNA_Ecto-sp13_S_contig14158.3234.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
SRQLRRNNRDKLCRSKLASVKHRIRDYLLLVAASKAGLPLPLARPLLPSL
TTTNAGALLVVRRPLEGVRPPTPPAREKGPRELLSQPWRSQTWRTPRRSS
TPSTARRTQTATMSARWTPTTTRRAPISWLSPSGGSRALRCASSTTALA
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mRNA from alignment at Ecto-sp13_S_contig14158:431..2885-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14158.3234.1 ID=mRNA_Ecto-sp13_S_contig14158.3234.1|Name=mRNA_Ecto-sp13_S_contig14158.3234.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2455bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14158:431..2885- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCGCCAGTTGCGACGTAACAATAGGGACAAACTATGCAGGAGTAAGCT
GGCGAGCGTCAAGCACCGGATACGTGATGTGAGACTGACGTAGTTCGTGC
CTTTTTGGCGTTGTTAACTCCGTTCCGTTGGCCTTTTCGTCCCCGAGAGA
CCAGAAAATCACCCATCTCCCATATCCTCCCGCAGCGCTTGCTGCCCACC
CCTCCTCATTCAAACTTCGCACGAACCCAACGCTGAGTTGGTCTTCATCT
CTCACATGCCGCTCCCTTCATCGCCAGTATCTTCTCCTCGTCGCGGCGTC
CAAGGCCGGGCTGCCGCTGCCCCTCGCCCGCCCCTTACTACCGTCGTTGA
CAACAACAAACGCGGGCGCTCTTCTCGTCGTACGTCGACCGCTCGAGGGC
GTAAGGCCTCCTACTCCTCCCGCCAGGGAAAAGGGCCCAAGAGAACTTCT
GTCTCAGCCTTGGAGGTGAGTTTGTGCAGATGTACGCGTTGTGTCCTCCC
CCCCGTCGCTTCCGACGTTGGGCTCTCTGTTAGTGTTGTTGCGTGTCTCG
AGCGCAAGTGCTTGTTGGATCCACGGTTCAAGCCGCAGAAAAGCCGTTAG
CTTTATTTTTTATTTTCAAACTGGTGCAGCAGCTGAAAACCGTTTCCAAC
CACCAGCTCCCCCTTGTCCTTGGTCTGGGCGACGGCCTGAAGATGGATGC
GTGTTGTCATAGTCACACCCGAAGTTAATGCGTCCTTTCGCGCGAAATCC
CGTCCAGCACCGCGAGAGATCTGGGCTGGCATGTGAGATGTTTTGAAAAC
CAGCACCATGTGTCAAAGAAAACGAAGTAGTCACTGCTGTACAAGTCTGA
ACAGGTGAACGAAAGCCCCATCGTTCGTTGTTTCATTTAGGGAGGTACTC
GGAGAATATGAGATGACGATGCAGTCCCGCCGTCTAAGTCATTGGTGGGG
TTACGAAAGAGAAGTTTGATTCCAAGTATGTATGAGCCTTTGGAGGAGGT
TGGGGGGTTGAAATATGGACAACTATTTCAAACAACCCAGTCAGTGCAGA
AGTTCCAGGAACGACTCCTTGCATTCTTGAGTGCACCCTACAGCAGTTCT
CTGAAAAAAACGTCCTGTCGTTTTCGTGTGATGCAACATCTGTATGTAGT
GTAAATCTAGGTGTATGCGGGTTGCCCGCTCTCTTCTTGCCGCTGCTTCA
CCACCCCACCCGGCGCCCATCCCCCGACCCCCGTAGTATATTTTCCTGGG
TTTGAGAGATTTGCGTGCGTGGCAAAACTGCACGTAGTGGGCGGGTGTTG
TACGCCTCATTTACCGCAGGTGTGTTTATTCGCACCCACTCTTTGGCGCA
GCTGCACCTGTGTTTCAACCCACACGAAAACTACCTCTGGGTTTGTTGTT
GTCCTCGAGATTCGACCACACGTGGCTCCCCATTTTCTTTCTCATCAACC
GGAAGAAACAGTTATTTCACCAAAGCTCTTGCTGTAGTCTCTATTCGAAA
TTCGGGCTTCGCAAAGGGGGTCTTGAGAGACACTACCAACAGCAGTGTGC
CGCGGGCCATTTGTTTGAGTATTGCCCCCGGCGCGTTTCCTGGTCAAAGT
TGGCGACTGAACCAGATCTGGAAGCCATTTATTTCTCATGTTTTTGGAGG
CAGACAAGAGAACGAGCTTTGCATATGTCTTGATCACAGAGCAGCATAGA
GGCAACATCGGTTTGAGCGCTCTAGGCCTGACCCAAAATTCGGACCAGGT
GCCTTCTTGTACACACATCTATATACTGCTGTTGCCGAATTTCAAGCGAT
TTAGTGCTCTCTCCAACCCGCGTCAGTCGATTAAAACAGTTTGCAGAAGC
TACAAAATTGCGCTCGAAAATAGAGCATCTCCCGTGTTTGTGCGGCACCG
CTCACACAGCACAGCTCTGCTTGCGAAAGACGAATTACGGAAAAAAACTG
CTTGCGTACCAGGGGAACAAGCATCCTGAGGGTCCCCGCCCTTTTCGTCG
CACCCAGGTGTCTTTGTGTGAAGAGCATCAGTTGTTGGCATGCACAGGGC
ACGACTTGATGCGGAAACAGAAAATTGGGAGGGGACGCAAAGACCAAAAA
TCCGAAAATCCCGAACCAGAAAAAACGCCTCGCATTTTAAACACAACAGT
GTTTATTTTTTTGTGGGGGTCGGAACACAGGTGGCTGGCGATTTGGTTCT
CCACCTCTCCGAAATTTGCTTACGGAAATACCACCCCCAACCTTGTCGCG
CCTTTCACCCCGTGCTCTCGCAGGAGTCAGACCTGGAGGACTCCACGTCG
GAGTTCCACCCCTTCGACTGCTAGGCGGACACAGACAGCGACGATGAGTG
CACGCTGGACACCCACGACGACCCGCCGAGCCCCGATCTCCTGGCTGAGC
CCAAGCGGAGGAAGCCGGGCCCTCCGATGCGCTTCGTCGACGACAGCCCT
CGCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14158:431..2885-

>mRNA_Ecto-sp13_S_contig14158.3234.1 ID=mRNA_Ecto-sp13_S_contig14158.3234.1|Name=mRNA_Ecto-sp13_S_contig14158.3234.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14158:431..2885- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCGCCAGTTGCGACGTAACAATAGGGACAAACTATGCAGGAGTAAGCT
GGCGAGCGTCAAGCACCGGATACGTGATTATCTTCTCCTCGTCGCGGCGT
CCAAGGCCGGGCTGCCGCTGCCCCTCGCCCGCCCCTTACTACCGTCGTTG
ACAACAACAAACGCGGGCGCTCTTCTCGTCGTACGTCGACCGCTCGAGGG
CGTAAGGCCTCCTACTCCTCCCGCCAGGGAAAAGGGCCCAAGAGAACTTC
TGTCTCAGCCTTGGAGGAGTCAGACCTGGAGGACTCCACGTCGGAGTTCC
ACCCCTTCGACTGCTAGGCGGACACAGACAGCGACGATGAGTGCACGCTG
GACACCCACGACGACCCGCCGAGCCCCGATCTCCTGGCTGAGCCCAAGCG
GAGGAAGCCGGGCCCTCCGATGCGCTTCGTCGACGACAGCCCTCGCC
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