mRNA_Ecto-sp13_S_contig10325.323.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10325.323.1
Unique NamemRNA_Ecto-sp13_S_contig10325.323.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10325.323.1 vs. uniprot
Match: D8LKQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ1_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 3.730e-37
Identity = 73/85 (85.88%), Postives = 75/85 (88.24%), Query Frame = 3 
Query:  138 MFGEDSMRECPLERSILGSIIPTLDPDAPQPFRMRKNASFADDAAPPEEPGSKLPLSTGRSGAAEPEGGVPRDRAGGDGGVAVTG 392
            MFGEDSMRECPLE SILGSIIPTLDP+ PQPFR RKNASFADD APPEEPG   PLSTGR GAAE EGG PRDRAGGDGGVAV+G
Sbjct:    1 MFGEDSMRECPLESSILGSIIPTLDPNPPQPFRKRKNASFADDTAPPEEPGLNPPLSTGRLGAAEAEGGAPRDRAGGDGGVAVSG 85
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10325.323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKQ1_ECTSI3.730e-3785.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10325contigEcto-sp13_S_contig10325:2555..4300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size393
Hectar predicted targeting categoryother localisation
Exons2
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462523.2797372-UTR-Ecto-sp13_S_contig10325:2554..25651681462523.2797372-UTR-Ecto-sp13_S_contig10325:2554..2565Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10325 2555..2565 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462523.2928634-CDS-Ecto-sp13_S_contig10325:2565..26371681462523.2928634-CDS-Ecto-sp13_S_contig10325:2565..2637Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10325 2566..2637 +
1681462523.3052204-CDS-Ecto-sp13_S_contig10325:3991..43001681462523.3052204-CDS-Ecto-sp13_S_contig10325:3991..4300Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10325 3992..4300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10325.323.1prot_Ecto-sp13_S_contig10325.323.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10325 2566..4300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10325.323.1

>prot_Ecto-sp13_S_contig10325.323.1 ID=prot_Ecto-sp13_S_contig10325.323.1|Name=mRNA_Ecto-sp13_S_contig10325.323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
MKPLYHDRAEKIAVTFTQNPSASQTADHNNCSSDSGTALAPPMFGEDSMR
ECPLERSILGSIIPTLDPDAPQPFRMRKNASFADDAAPPEEPGSKLPLST
GRSGAAEPEGGVPRDRAGGDGGVAVTG
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mRNA from alignment at Ecto-sp13_S_contig10325:2555..4300+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10325.323.1 ID=mRNA_Ecto-sp13_S_contig10325.323.1|Name=mRNA_Ecto-sp13_S_contig10325.323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1746bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10325:2555..4300+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCACCAAAGATGAAGCCGCTGTACCACGACAGAGCAGAGAAAATCGCG
GTTACGTTCACGCAGAACCCTTCGGCTTCCCAGGCAAGCGTCTACAAAGA
GTGTGTGAGCTCGTGAAACAAGCACCTGGGTTTGAAATTTGAATCGCCTC
TGTGTTTTGCTCAACTCGTTGCTTCATGTCATGGTGTTCGACAGCAGCAG
GAAATGCATGCGGCATGGACATTTTAGCTGCGTGGACTGTGATTCTCCTA
CAGTACGACCAAAAGCCGTCGCACTACTGTTATTTTCGATGCCCTCACGC
ATATGTAACTCGGCATACTATGTTTTAGCAGACCACGAGATTTCAAAATA
TTAATATTTGCAGCATTGACGCGATTGGGGGGCAGGGGAAACGAAACAGA
GGGGGCGAGAGAGAGCTTGGAGAGAGAGAGAAGAGAGCCTGGAGGCGTTA
TGCCGTACAGTACCTCCGTGGCACAGCAGTCGTGATCTAGCCTCTGTACA
GTAATCATTACGTACCTCGTCTTCCAACAACTACGTTTTGCTACTACTGT
AGATGCAGTAAAAGTCGAGCGCATGCAAACATATCTGCCACCCTACGAGA
AAAAGAGCGGTCTGCGAGGACATCTCGACGGTAAAACGATAACAGTGAGA
GCTGCGCGGAGGACAAGTGTAGAGGTGACGCAGTCATTGGTACACGTACG
AACGTTTACAAGATGCAACCTGAGCGGAGTATCTTGATGGTCGGTGTGGA
GCAAGAAACCCCAAATACGGGTCGTCCATAGCCACCTGCGGAGCTGAGGA
GTGGGAAGGAAGTCTTGTGACTATATACTACTGTAGATATCCTTCTCTAT
CTCTTCAGTGCTGAACACTCTCTCGTTCCGAAACCTTTCGCCCTGTCATA
TATCAAGAAAGAAAACTGCCAGCCCCCGGTAGTGGGCCAAGACTACCACG
ACCCAAGTCCACCATACAAAGAGGGAACCCTGTGTCCCTACAGCAGTAGC
TGAGTGTTTGGAAGTATTCAGCCCGAAACAAGGCCCTCAGAACACTCCTT
TCTTCAGCCAATGAAGACGACAGATTGCTTCCGAGTTAAACGGCCGTCCA
GATGGTAAAATTGGAACACGTTTTTGGCACCTTATGCCACAGGCAGTCGG
AGGGCACGCGTGCTCGCGTTGGGGGGGGGGGATCCGTCACCCGTGGGACG
TTATTACCTGTAGGCCCAGCGGAGGGGTTTCCGCACACTTCATTAATTGC
CTAACCCCAGTGATGAGGGGCGAACGTCCCCCCCACCCGCCGGAGTCGTA
GATTCTCAAAATCTACATCATGGACGGAAGAATTTCCCATCAGCACGTGA
TATCCACTACACATACTCGTACTCACGACTGTTGTCCTCCGTTGTGCATC
GACTGGATTTTGTTTTTCTTGGTCACGTCGTTTCCAGACAGCGGACCACA
ACAACTGCAGTAGCGATAGCGGCACAGCACTCGCGCCCCCGATGTTCGGC
GAGGACAGCATGCGGGAGTGCCCTCTCGAAAGGTCCATCCTCGGGTCCAT
CATCCCCACCCTGGACCCCGACGCCCCGCAACCTTTCCGCATGCGCAAGA
ACGCTTCCTTCGCCGACGACGCGGCTCCCCCCGAGGAGCCGGGATCGAAA
CTCCCCCTCTCGACCGGCAGATCAGGCGCCGCAGAGCCTGAGGGGGGGGT
TCCACGGGATCGGGCAGGGGGGGACGGCGGAGTGGCAGTGACAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10325:2555..4300+

>mRNA_Ecto-sp13_S_contig10325.323.1 ID=mRNA_Ecto-sp13_S_contig10325.323.1|Name=mRNA_Ecto-sp13_S_contig10325.323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10325:2555..4300+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCCGCTGTACCACGACAGAGCAGAGAAAATCGCGGTTACGTTCAC
GCAGAACCCTTCGGCTTCCCAGACAGCGGACCACAACAACTGCAGTAGCG
ATAGCGGCACAGCACTCGCGCCCCCGATGTTCGGCGAGGACAGCATGCGG
GAGTGCCCTCTCGAAAGGTCCATCCTCGGGTCCATCATCCCCACCCTGGA
CCCCGACGCCCCGCAACCTTTCCGCATGCGCAAGAACGCTTCCTTCGCCG
ACGACGCGGCTCCCCCCGAGGAGCCGGGATCGAAACTCCCCCTCTCGACC
GGCAGATCAGGCGCCGCAGAGCCTGAGGGGGGGGTTCCACGGGATCGGGC
AGGGGGGGACGGCGGAGTGGCAGTGACAGGG
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