mRNA_Ecto-sp13_S_contig14150.3230.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig14150.3230.1
Unique Name	mRNA_Ecto-sp13_S_contig14150.3230.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig14150.3230.1 vs. uniprot
Match: A0A6H5KFF8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFF8_9PHAE)

HSP 1 Score: 808 bits (2088), Expect = 2.720e-293
Identity = 412/438 (94.06%), Postives = 419/438 (95.66%), Query Frame = 1

Query:    4 GSGDVYFATSNSAIQRAHYDSAKSPSWDVTTVVGGHVEVLVEGYNLGTSIDDVASFSVKGVECPTRRRESSNTLVCVLGDPAVTIDLGESVGTEDIVVQTASGGWTQGGYPGDFVDVKLADHSLKPIITRVEATGRAISPRALCFDSAGGTLYYSDLATRSLNRISLLDIGGDGGSILTAKVEFDAFLPDVGLVQGMAIDVSEGRHGGFVYLSDAQGGTISRVELPADGTRPEVPGAQQVLVSGLIDPMGIALEPDGGRGRLFYALRGGRICAVSRDGSISTSVPPTAVLLEGGGYEVRRFDSGTRLDGIAISASEGGGIDPTEIRLYWAESGRAPAIKRSTLDGTRPEDVPVEDDGTEAKGQLVWPRGLAFGAEASTGLLFGEYLGSVRLLPLPPAAGRLHTIAEADSYPAAVAIHALIAAAGREGAEERFFTHSVR 1317
            GSGDVY+ATSNSAIQRAHYDSAKSPSW VTTVVGGHVEV VEGYNLGTSIDDV SFSVKGVECPTRRRESSNTLVC LGDPAVT DLGESVGTEDIVVQTASGGWTQGGYPGDFVD KLADHSLKPIITRVEATGR ISPRALCFDSAGGTLYYSDLATRSLNRISL D  GDGGS LTAKVEFDAFLPDVGLVQGMAIDVSEG++GGFVY SDAQGGTISRVELPADGTRPEVPGA+QVL SGLIDPMGIALEPDGGRGRLFYALRGGRICAVSRDGSISTSVPPTAVLLEGGGYEVRRFDSGTRLDGIAISASEGG +DPTEIRLYWAESGR PAIKRSTLDGTRPEDV VEDDGTEAKGQLVWPRGLAFGAEASTGLLFGEYLGSVRLLPLPPA G + TIAEADSYPAAVAIHAL+AAAGREGAEERFFTHSVR
Sbjct:   84 GSGDVYYATSNSAIQRAHYDSAKSPSWYVTTVVGGHVEVRVEGYNLGTSIDDVVSFSVKGVECPTRRRESSNTLVCALGDPAVTSDLGESVGTEDIVVQTASGGWTQGGYPGDFVDAKLADHSLKPIITRVEATGRTISPRALCFDSAGGTLYYSDLATRSLNRISL-DNSGDGGSTLTAKVEFDAFLPDVGLVQGMAIDVSEGQNGGFVYFSDAQGGTISRVELPADGTRPEVPGARQVLASGLIDPMGIALEPDGGRGRLFYALRGGRICAVSRDGSISTSVPPTAVLLEGGGYEVRRFDSGTRLDGIAISASEGGVLDPTEIRLYWAESGRTPAIKRSTLDGTRPEDVSVEDDGTEAKGQLVWPRGLAFGAEASTGLLFGEYLGSVRLLPLPPARGSVDTIAEADSYPAAVAIHALVAAAGREGAEERFFTHSVR 520

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig14150.3230.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig14150.3230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5KFF8_9PHAE	2.720e-293	94.06	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig14150	contig	Ecto-sp13_S_contig14150:628..2328 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	0
Seed ortholog score	79.0
Seed ortholog evalue	6.3e-12
Seed eggNOG ortholog	115417.EPrPW00000018237
Model size	1320
KEGG ko	ko:K12389,ko:K12835
KEGG Pathway	ko03040,ko04142,map03040,map04142
KEGG Module	M00352
Hectar predicted targeting category	other localisation
GOs	GO:0000331,GO:0002791,GO:0002792,GO:0002793,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005794,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006865,GO:0006873,GO:0006885,GO:0006897,GO:0006907,GO:0006950,GO:0006996,GO:0007033,GO:0007034,GO:0007154,GO:0007155,GO:0008150,GO:0008285,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0012505,GO:0015711,GO:0015802,GO:0015809,GO:0015849,GO:0016043,GO:0016192,GO:0019725,GO:0022610,GO:0030003,GO:0030004,GO:0030139,GO:0030587,GO:0030641,GO:0031152,GO:0031156,GO:0031410,GO:0031589,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032502,GO:0032879,GO:0032880,GO:0033554,GO:0042127,GO:0042592,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043900,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0046942,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048878,GO:0050708,GO:0050709,GO:0050714,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051046,GO:0051047,GO:0051048,GO:0051049,GO:0051050,GO:0051051,GO:0051179,GO:0051222,GO:0051223,GO:0051224,GO:0051234,GO:0051453,GO:0051703,GO:0051704,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0070201,GO:0071496,GO:0071702,GO:0071705,GO:0071840,GO:0090087,GO:0090702,GO:0097708,GO:0098609,GO:0098630,GO:0098657,GO:0098743,GO:0098771,GO:0099120,GO:1903530,GO:1903531,GO:1903532,GO:1904950,GO:1904951
Exons	2
EggNOG free text desc.	arginine transport
EggNOG OGs	KOG3880@1,KOG3880@2759
Ec32 ortholog description	Six-bladed beta-propeller, TolB-like
Ec32 ortholog	Ec-06_002340.1
EC	3.6.4.13
Cds size	1320
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko03041

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462756.2028513-CDS-Ecto-sp13_S_contig14150:627..897	1681462756.2028513-CDS-Ecto-sp13_S_contig14150:627..897	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig14150 628..897 +
1681462756.2212188-CDS-Ecto-sp13_S_contig14150:1278..2328	1681462756.2212188-CDS-Ecto-sp13_S_contig14150:1278..2328	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig14150 1279..2328 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig14150.3230.1	prot_Ecto-sp13_S_contig14150.3230.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig14150 628..2328 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig14150:628..2328+
coding sequence from alignment at Ecto-sp13_S_contig14150:628..2328+

protein sequence of mRNA_Ecto-sp13_S_contig14150.3230.1

>prot_Ecto-sp13_S_contig14150.3230.1 ID=prot_Ecto-sp13_S_contig14150.3230.1|Name=mRNA_Ecto-sp13_S_contig14150.3230.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=440bp
KGSGDVYFATSNSAIQRAHYDSAKSPSWDVTTVVGGHVEVLVEGYNLGTS
IDDVASFSVKGVECPTRRRESSNTLVCVLGDPAVTIDLGESVGTEDIVVQ
TASGGWTQGGYPGDFVDVKLADHSLKPIITRVEATGRAISPRALCFDSAG
GTLYYSDLATRSLNRISLLDIGGDGGSILTAKVEFDAFLPDVGLVQGMAI
DVSEGRHGGFVYLSDAQGGTISRVELPADGTRPEVPGAQQVLVSGLIDPM
GIALEPDGGRGRLFYALRGGRICAVSRDGSISTSVPPTAVLLEGGGYEVR
RFDSGTRLDGIAISASEGGGIDPTEIRLYWAESGRAPAIKRSTLDGTRPE
DVPVEDDGTEAKGQLVWPRGLAFGAEASTGLLFGEYLGSVRLLPLPPAAG
RLHTIAEADSYPAAVAIHALIAAAGREGAEERFFTHSVR*

mRNA from alignment at Ecto-sp13_S_contig14150:628..2328+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig14150.3230.1 ID=mRNA_Ecto-sp13_S_contig14150.3230.1|Name=mRNA_Ecto-sp13_S_contig14150.3230.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1701bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14150:628..2328+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAGGCAGCGGAGACGTCTATTTTGCCACCAGCAACTCAGCGATACAACG
GGCACACTATGACTCGGCCAAGTCGCCGTCGTGGGATGTTACGACCGTCG
TCGGCGGGCACGTGGAGGTGCTCGTCGAGGGATACAACCTCGGCACCAGC
ATCGACGACGTCGCCTCTTTCTCCGTCAAGGGGGTGGAATGCCCGACCAG
GAGAAGGGAGTCGAGCAACACCCTGGTCTGTGTGCTCGGAGATCCGGCGG
TTACAATTGACCTCGGGGAGGTGAGAGCACAGCGTGGTTCCGTCACGTTG
TAATCTCAGGTCAAAGCGTATTCTGCCAGGCACCCACTGGGTGAAAGCCG
AAAGATGTCATGTGTGGAGTGTATGGGTTTTGGCCCCTTTACCTATCGGT
TCTACCATCAATAGTCTAAACTTTGAGGGCCAAGACTCACCGCCAAGAAG
CGCAACGGAATTGCTGCTCGCGGCGTGACGCGTGAATCCGAGAGTGCGGT
GGAACGCTTTGATGAGAAAACCGCAGCCACGCTTGATCCGAAGGTTTTGT
GGGTCGCCTGATGGCGGGGACACACATATCACATTTCCAATGACTATTGT
TCTTAGCCGAAACGGGCGGCCTTGCCCTCATTTGTTTTTTTCTCCTCACA
GAGTGTCGGGACCGAAGACATCGTCGTGCAAACCGCCTCCGGAGGGTGGA
CGCAGGGTGGCTACCCTGGCGATTTCGTCGACGTAAAATTAGCTGACCAC
TCGCTCAAGCCCATCATCACACGCGTCGAGGCGACCGGCCGTGCCATCTC
GCCTCGTGCGCTGTGTTTCGACTCCGCGGGAGGAACCCTGTACTACAGCG
ACCTCGCCACCCGTTCCCTTAACAGGATAAGTCTCCTCGACATCGGCGGT
GACGGCGGGTCGATACTAACGGCCAAGGTGGAATTCGATGCCTTCTTGCC
AGACGTTGGTCTCGTGCAGGGCATGGCCATCGACGTAAGCGAGGGCCGAC
ACGGCGGGTTCGTGTACCTCTCGGACGCACAGGGTGGGACCATCTCAAGG
GTAGAGCTGCCTGCCGACGGGACCCGACCGGAGGTACCCGGGGCACAGCA
GGTCCTAGTCTCCGGATTAATCGACCCGATGGGCATTGCTCTCGAGCCAG
ACGGCGGCAGAGGCCGCTTGTTCTACGCGCTGCGTGGGGGCCGTATTTGC
GCGGTCTCGCGAGACGGTTCTATCAGCACTTCTGTCCCGCCGACGGCCGT
GTTATTGGAGGGCGGTGGCTACGAGGTTCGTCGGTTCGATTCGGGAACAC
GTCTTGATGGCATCGCGATCTCAGCTTCTGAGGGCGGGGGAATCGATCCG
ACCGAGATAAGGCTGTACTGGGCGGAGTCGGGTCGCGCCCCCGCCATAAA
GAGGTCGACCTTAGATGGCACGCGGCCGGAAGACGTGCCTGTCGAAGACG
ATGGAACGGAAGCGAAGGGTCAGCTAGTTTGGCCCCGCGGGCTGGCGTTT
GGTGCCGAAGCTTCGACCGGCTTGTTGTTTGGCGAATATCTTGGCAGTGT
ACGGCTGCTCCCGCTTCCGCCAGCGGCTGGGAGGCTTCACACAATAGCGG
AGGCGGACTCTTATCCTGCGGCAGTCGCGATCCACGCATTGATTGCAGCA
GCCGGTAGGGAAGGTGCTGAGGAAAGGTTTTTCACGCACAGCGTTCGTTG
A

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14150:628..2328+

>mRNA_Ecto-sp13_S_contig14150.3230.1 ID=mRNA_Ecto-sp13_S_contig14150.3230.1|Name=mRNA_Ecto-sp13_S_contig14150.3230.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1320bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14150:628..2328+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAGGCAGCGGAGACGTCTATTTTGCCACCAGCAACTCAGCGATACAACG
GGCACACTATGACTCGGCCAAGTCGCCGTCGTGGGATGTTACGACCGTCG
TCGGCGGGCACGTGGAGGTGCTCGTCGAGGGATACAACCTCGGCACCAGC
ATCGACGACGTCGCCTCTTTCTCCGTCAAGGGGGTGGAATGCCCGACCAG
GAGAAGGGAGTCGAGCAACACCCTGGTCTGTGTGCTCGGAGATCCGGCGG
TTACAATTGACCTCGGGGAGAGTGTCGGGACCGAAGACATCGTCGTGCAA
ACCGCCTCCGGAGGGTGGACGCAGGGTGGCTACCCTGGCGATTTCGTCGA
CGTAAAATTAGCTGACCACTCGCTCAAGCCCATCATCACACGCGTCGAGG
CGACCGGCCGTGCCATCTCGCCTCGTGCGCTGTGTTTCGACTCCGCGGGA
GGAACCCTGTACTACAGCGACCTCGCCACCCGTTCCCTTAACAGGATAAG
TCTCCTCGACATCGGCGGTGACGGCGGGTCGATACTAACGGCCAAGGTGG
AATTCGATGCCTTCTTGCCAGACGTTGGTCTCGTGCAGGGCATGGCCATC
GACGTAAGCGAGGGCCGACACGGCGGGTTCGTGTACCTCTCGGACGCACA
GGGTGGGACCATCTCAAGGGTAGAGCTGCCTGCCGACGGGACCCGACCGG
AGGTACCCGGGGCACAGCAGGTCCTAGTCTCCGGATTAATCGACCCGATG
GGCATTGCTCTCGAGCCAGACGGCGGCAGAGGCCGCTTGTTCTACGCGCT
GCGTGGGGGCCGTATTTGCGCGGTCTCGCGAGACGGTTCTATCAGCACTT
CTGTCCCGCCGACGGCCGTGTTATTGGAGGGCGGTGGCTACGAGGTTCGT
CGGTTCGATTCGGGAACACGTCTTGATGGCATCGCGATCTCAGCTTCTGA
GGGCGGGGGAATCGATCCGACCGAGATAAGGCTGTACTGGGCGGAGTCGG
GTCGCGCCCCCGCCATAAAGAGGTCGACCTTAGATGGCACGCGGCCGGAA
GACGTGCCTGTCGAAGACGATGGAACGGAAGCGAAGGGTCAGCTAGTTTG
GCCCCGCGGGCTGGCGTTTGGTGCCGAAGCTTCGACCGGCTTGTTGTTTG
GCGAATATCTTGGCAGTGTACGGCTGCTCCCGCTTCCGCCAGCGGCTGGG
AGGCTTCACACAATAGCGGAGGCGGACTCTTATCCTGCGGCAGTCGCGAT
CCACGCATTGATTGCAGCAGCCGGTAGGGAAGGTGCTGAGGAAAGGTTTT
TCACGCACAGCGTTCGTTGA