mRNA_Ecto-sp13_S_contig14149.3228.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14149.3228.1
Unique NamemRNA_Ecto-sp13_S_contig14149.3228.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14149.3228.1 vs. uniprot
Match: A0A6H5K1Y5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Y5_9PHAE)

HSP 1 Score: 525 bits (1352), Expect = 7.980e-183
Identity = 282/318 (88.68%), Postives = 288/318 (90.57%), Query Frame = 1 
Query:   70 DLQDQEHAAGGRRGGLLGRAFQQAKRIGEIVDPDAVANAEQAWKELAPDLRQAADDLLRSKEEILSAGTEAKGILSAAKETWSGLGAVKTDRTAADSSATFAQEKEEEGSVTVGWGGLKKDIERAAQGVFGDVFGEAADEVLASFETRLSEALSEGNVRAASQLWRRLLDTPGIQLLAQDRRLWAGAEKAVRRYLSGFLSEKSAKEAQRAVNATADFALHFAGLSRNAAKSDHEVFEELSHKLCHLQGAAEKLWPLTVLALPLLGYQDYATTLESAIRSNALSRVTQTVSASVLLGLNPRDPFLLTLIASFSLGHLSK 1023
            DLQDQEH AGGRRGGLLGRAFQQAKRIGEIV+PDAVANAEQAWKELAPDLRQAADD              A+ I        SG GAV+TDRTAADSSATFAQE+EE GSVTVGW GLKKDIERAAQGVFGDVFGEAADEVLASFETRLSEALSEGNVRAASQLWRRLLDTPG+QLLAQDRRLWAGAEKAVRRYLSGFLSEKSAKEAQRAVNATADFALHFAGLSRNAAKSDHEVFEELSHKLCHLQGAAEKLWPL VLALPLLGYQDYA  LESAIRSNALSRVTQTVSA+VLLGLNPRDPFLLTLIASFSLGHLSK
Sbjct:    2 DLQDQEHTAGGRRGGLLGRAFQQAKRIGEIVNPDAVANAEQAWKELAPDLRQAADDXXXXXXXXXXXXXXARDIWXXXXXXXSGFGAVETDRTAADSSATFAQEREEGGSVTVGWEGLKKDIERAAQGVFGDVFGEAADEVLASFETRLSEALSEGNVRAASQLWRRLLDTPGVQLLAQDRRLWAGAEKAVRRYLSGFLSEKSAKEAQRAVNATADFALHFAGLSRNAAKSDHEVFEELSHKLCHLQGAAEKLWPLAVLALPLLGYQDYAKKLESAIRSNALSRVTQTVSATVLLGLNPRDPFLLTLIASFSLGHLSK 319
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14149.3228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1Y5_9PHAE7.980e-18388.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14149contigEcto-sp13_S_contig14149:371..4334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1044
Hectar predicted targeting categorysignal peptide
Exons7
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_000280.1
Cds size1044
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14149.3228.1prot_Ecto-sp13_S_contig14149.3228.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14149 371..4334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462755.8694263-CDS-Ecto-sp13_S_contig14149:370..4941681462755.8694263-CDS-Ecto-sp13_S_contig14149:370..494Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14149 371..494 -
1681462755.8780067-CDS-Ecto-sp13_S_contig14149:916..10261681462755.8780067-CDS-Ecto-sp13_S_contig14149:916..1026Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14149 917..1026 -
1681462755.8859148-CDS-Ecto-sp13_S_contig14149:1562..16381681462755.8859148-CDS-Ecto-sp13_S_contig14149:1562..1638Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14149 1563..1638 -
1681462755.8964539-CDS-Ecto-sp13_S_contig14149:2284..25531681462755.8964539-CDS-Ecto-sp13_S_contig14149:2284..2553Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14149 2285..2553 -
1681462755.9050496-CDS-Ecto-sp13_S_contig14149:2956..32201681462755.9050496-CDS-Ecto-sp13_S_contig14149:2956..3220Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14149 2957..3220 -
1681462755.9136212-CDS-Ecto-sp13_S_contig14149:3511..36431681462755.9136212-CDS-Ecto-sp13_S_contig14149:3511..3643Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14149 3512..3643 -
1681462755.9311957-CDS-Ecto-sp13_S_contig14149:4265..43341681462755.9311957-CDS-Ecto-sp13_S_contig14149:4265..4334Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14149 4266..4334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14149.3228.1

>prot_Ecto-sp13_S_contig14149.3228.1 ID=prot_Ecto-sp13_S_contig14149.3228.1|Name=mRNA_Ecto-sp13_S_contig14149.3228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=348bp
MRSGARLCTLVLCVTCMVVRGQADLQDQEHAAGGRRGGLLGRAFQQAKRI
GEIVDPDAVANAEQAWKELAPDLRQAADDLLRSKEEILSAGTEAKGILSA
AKETWSGLGAVKTDRTAADSSATFAQEKEEEGSVTVGWGGLKKDIERAAQ
GVFGDVFGEAADEVLASFETRLSEALSEGNVRAASQLWRRLLDTPGIQLL
AQDRRLWAGAEKAVRRYLSGFLSEKSAKEAQRAVNATADFALHFAGLSRN
AAKSDHEVFEELSHKLCHLQGAAEKLWPLTVLALPLLGYQDYATTLESAI
RSNALSRVTQTVSASVLLGLNPRDPFLLTLIASFSLGHLSKVSNADR*
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mRNA from alignment at Ecto-sp13_S_contig14149:371..4334-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14149.3228.1 ID=mRNA_Ecto-sp13_S_contig14149.3228.1|Name=mRNA_Ecto-sp13_S_contig14149.3228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3964bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14149:371..4334- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGATCTGGAGCTAGGCTATGCACACTTGTGTTGTGCGTGACTTGTAT
GGTCGTTCGTGGACAAGCGGTACGTGTGACGAAATGGCATCGAGATGATG
GCCACATGGCCACTACGCTTGAGCGGGCCGTCTTGACAAAATTGAAATTT
GAAAGAGGCAGCGGCCAAGTCATTTCTACTGACATATAAGCTGCAGACCA
CACACATGCTTAAATGTCATGACCTCTTGACAGCGATCGCCCCTTGCTTA
CAGTTGACCGCGAGAGCACTTTCGCCAAAAAATATTTGATGACTTGGGGC
TTGAGGAAAGAGATGCACAAACCAGCCGTTGGTCGGTAGTTGGTGATGGG
GTCGACATACAGGCTGTTTCACAGCCCTGTACTCCAAAATCCACACGATC
CTTCGGGGTGACACGTGTGCGCACTTCATCCGCATGTCCAGGTGTAGATG
AGTTTCGTTCACTCGTGCATTCGTAATTCGTACAAGTACACGTGTGTACA
CGTGCTCGCGCCGCGGATCTGTACACCACGCCGGCCGGCTCTGCATTCGA
GTTGCGATTTTTCTCAGTGTTGACAACTACGGAGCATGGTTTTTATCCCA
CTTCGCACAAAGTGATGTGCTATTCTATGCACCAGTGAGCTTCAGTTTCA
ATATATTGCTCCGTTTGTCCGTGTGCGCTCGTGTATACTAGGACCTGCAA
GATCAAGAGCATGCGGCGGGGGGGAGGAGGGGCGGGTTGTTGGGGCGGGC
CTTCCAACAAGCAAAGCGCATAGGGGAGATCGTCGACCCCGATGCTGTGG
CCAACGCGGAGCAGGCTTGGAAAGTGAGGGGAGCCTGTAACAAAGAAAAC
ACACGCCAATTTTTTTTGTGTATGCATTTCAATTATCTTCGGCCCTGCCG
GTTGTATGGCGCTTGGTACCCCATTCGCACCAGACGTGGTGTGACACCAT
TGCACAAAAGGCCGCTAATTCCCGACCGTTCTGCATCTTAAACGCGCCGT
TTGCGAAGAGCGGCGCACACGGCTATCACCAACAAAACCAAAGCAACAGG
CGATGATCCATGTACGTAGACAACGTTTTGTTAGCAACCCATTCTGTCAT
CCCCATCACCCCAGGAGCTTGCACCCGACTTGCGGCAAGCCGCAGACGAT
CTTCTCCGAAGCAAGGAAGAAATTTTGTCCGCTGGAACGGAGGCAAAAGG
CATCTTGTCCGCTGCCAAGGAGACCTGGTCGGGGTTAGGGGCGGTAAAAA
CAGATCGAACAGCGGCCGACAGCAGTGCTACCTTCGCGCAGGAGAAGGAA
GAAGAGGGTTCTGTCACGGTTGGATGGGGTGGCCTCAAGAAGGACATTGA
AAGGGCAGCCCAGGGGGTCTTCGGTGATGTGAGCGTTTAGGGGTTTGTGG
TTGACTGCACTACTTGAGGTGGTGCCGCGGTCGATGCCGTTGCCATCCTC
ACAAGAAAGCTCACACGAAAGGGCTACAACAGCGTGCGAACTACAGAGTT
CTTTGCATGTGTGAATGAGACTCTTTCGGAGCAGTGGGTAGCCGACTTTT
TTTCGCTTTGCCGAGGTAAAGAAGAACGTCACAAGGTTTTAACGGGACAA
GAACACTCTACATGAAGCTGCCCGTGTCGTTGCCACTGTCGAGACCCTCA
CATCGCTCCCGTACACACCTCGCTGCTCGCACAAGCCAACTGGCGGTTTT
ATTGTCACGTGTACACAAGAGGCCTTCGCTCCGTTTGACACAGAGCACTA
CTCGCGAAACGACACCATCGTACAATCGAAGGTCTTCGGAGAGGCCGCCG
ACGAAGTCTTGGCATCTTTCGAGACCCGTCTATCGGAGGCCCTGTCGGAA
GGCAACGTTCGCGCGGCTTCTCAGCTGTGGCGTCGCCTGCTTGACACGCC
GGGGATACAGCTTCTCGCCCAAGACCGGCGGTTGTGGGCCGGGGCGGAAA
AAGCGGTGCGACGGTACCTCAGCGGCTTCTTGAGCGAGAAGTCAGCGAAG
GAAGCGCAGAGAGCCGTCAACGCCACGGCGGACTTCGCACTACACTTCGC
GTGAGTGATTATGACGGCAGTTTTGGAAGAATTCTGGTCCGTTTATTTGG
CGTGCTTGGGATCCACGATGAGGCGTACCATATCTGTACGCAGGTGCTTT
GGTTAACCTTTTGACGGCCCGGTTGATTCTTCTCGTTGGTGGTGAACACG
TGTTGAGCGTGTGTCGTCCGATGTAGTCTGGACGTCAGTTTTTTTGCACC
TTACCGTAGTTTTGTCTGGACGCATCAGCCGGTGTGATGAAGGAGGAATG
GAGACCAAAACAGGATTACCTGTCAATTATTTTTTCCTCTTTTCTCCACT
TTCGGTCTTGGTGCTTGCCTTCGTTGCTATCTGGAAAAGGAGACAGGCGC
TTCTTTCCCTCATCGACCATGATTTAATCGCTTTCGTCTGTTCTGGGCAT
TCTATGAGAGAAGGGGCCATTCGTGTGACTTCGCCGAAATTCGAACGCAC
TTCCCAAACGCGAAAAGGTTGCGAAGGTACTTAGCCACTGTTGCTTGATC
AGTGAGTACTATCGGAAGGTTCTGGAGACATTGAGTGTACTTGCAGGATG
GTTTACGAGCCTTCTTTCGCAACGCGCTGGCGTGTCGCGGCACTCTTGCG
AGCGTAGCACCAATTCGAACCAACGCCATTCGTTGTGTCTTTGCAGGGGA
TTGAGTCGCAATGCCGCCAAGAGCGACCACGAGGTGTTCGAGGAGCTGTC
ACACAAGCTCTGTCATCTGCAGGTGCGCGAATTGTTGGCTCAGGCTATTG
CCGAAACCACAGCTGTCGCCTGCCGTCGAAATCGGCACAACGTTACAAGT
GTGGCATCCATTTCGCATTCATCGGCAGCTGCAAACACCCAAATCTTGGT
CCTGGGACTACTTGCGAGGCGTGATAGCTTCACAAGGGAAGACATGCGTG
CAGCTTTGCTTTTTTCCTGCCTTATCGCGGACCAACTCTCCTCGTCCCTG
CCAGACGCGCTTCACGCGGCCGTGTCAGGCGATTTCCAGGCCAAGTATGT
AGATCTCTGCTTCTGTGTTGGAAGCTCGAGAGCCTTCTCGTTTTCAAGTC
TTGGACGTGCAGCTGGTTGTCTCCGCCCATTTCTCAGCGGCTTGTCGGTT
CGGGTCCTTAAACGCTGTCGAATACGTTTGTGTATGAGCTGACGGGGAAA
CACAACTTGATACTTAAGCAAGCCAAATTTCATCGTTGTCGATTTGGTTT
TGCTTCCCTCCGTCCTCCACCGTTCCATCCACGCTCACCCGGTCGGCAAT
CCTTCAAGGGTGCTGCGGAAAAGCTTTGGCCCTTGACGGTGCTTGCTCTA
CCCTTGCTGGGATACCAGGACTACGCTACAACGCTCGAGAGCGCGATTAG
ATCTAACGCTCTGTCCAGGTGATCTACGACACCTTCGGAACTCACGTCAG
CGTCGAGTTTTTCCACAAGCCAAACGAGTGAAAACAACGTGACGGTTCTA
GGTGGTACGGTTTCGACCGTTCTTGCCCCTTTGCAGACACGCGAGTCTTG
ATGGAGTTGGTTTCCCCCCACCGGCACCGAAGGACGTTGGTCTGTACTTT
CGGTCGCTCCTAGCGAGTGGTATACTACCGATCGTCGCTTTCGCGATCGG
TTTTATTCTGATGGGAAGTACGCAACCCTCATGATGTGGCTAAAAGTGTC
GAGCACGGGTTCGTTCTTCCTCAGATACAACCTGGTGAAGATTCGCCAGC
AAATGGTTCACACTGCACCTTGTTTTCTCGAATGCAGCGTCCGTTTACGT
TTGATGGTCTGGTAACGCCCGTTTGCGTTTTTTTCTGCAGGGTAACGCAG
ACCGTCTCCGCGAGCGTGTTGTTGGGCCTCAACCCTCGTGATCCTTTCCT
CCTGACACTCATCGCCTCCTTCTCCTTAGGACACCTCTCCAAGGTGAGCA
ATGCGGACAGATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14149:371..4334-

>mRNA_Ecto-sp13_S_contig14149.3228.1 ID=mRNA_Ecto-sp13_S_contig14149.3228.1|Name=mRNA_Ecto-sp13_S_contig14149.3228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1044bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14149:371..4334- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGATCTGGAGCTAGGCTATGCACACTTGTGTTGTGCGTGACTTGTAT
GGTCGTTCGTGGACAAGCGGACCTGCAAGATCAAGAGCATGCGGCGGGGG
GGAGGAGGGGCGGGTTGTTGGGGCGGGCCTTCCAACAAGCAAAGCGCATA
GGGGAGATCGTCGACCCCGATGCTGTGGCCAACGCGGAGCAGGCTTGGAA
AGAGCTTGCACCCGACTTGCGGCAAGCCGCAGACGATCTTCTCCGAAGCA
AGGAAGAAATTTTGTCCGCTGGAACGGAGGCAAAAGGCATCTTGTCCGCT
GCCAAGGAGACCTGGTCGGGGTTAGGGGCGGTAAAAACAGATCGAACAGC
GGCCGACAGCAGTGCTACCTTCGCGCAGGAGAAGGAAGAAGAGGGTTCTG
TCACGGTTGGATGGGGTGGCCTCAAGAAGGACATTGAAAGGGCAGCCCAG
GGGGTCTTCGGTGATGTCTTCGGAGAGGCCGCCGACGAAGTCTTGGCATC
TTTCGAGACCCGTCTATCGGAGGCCCTGTCGGAAGGCAACGTTCGCGCGG
CTTCTCAGCTGTGGCGTCGCCTGCTTGACACGCCGGGGATACAGCTTCTC
GCCCAAGACCGGCGGTTGTGGGCCGGGGCGGAAAAAGCGGTGCGACGGTA
CCTCAGCGGCTTCTTGAGCGAGAAGTCAGCGAAGGAAGCGCAGAGAGCCG
TCAACGCCACGGCGGACTTCGCACTACACTTCGCGGGATTGAGTCGCAAT
GCCGCCAAGAGCGACCACGAGGTGTTCGAGGAGCTGTCACACAAGCTCTG
TCATCTGCAGGGTGCTGCGGAAAAGCTTTGGCCCTTGACGGTGCTTGCTC
TACCCTTGCTGGGATACCAGGACTACGCTACAACGCTCGAGAGCGCGATT
AGATCTAACGCTCTGTCCAGGGTAACGCAGACCGTCTCCGCGAGCGTGTT
GTTGGGCCTCAACCCTCGTGATCCTTTCCTCCTGACACTCATCGCCTCCT
TCTCCTTAGGACACCTCTCCAAGGTGAGCAATGCGGACAGATAG
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