prot_Ecto-sp13_S_contig14145.3227.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14145.3227.1
Unique Nameprot_Ecto-sp13_S_contig14145.3227.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length333
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14145.3227.1 vs. uniprot
Match: D7FT24_ECTSI (Similar to ataxia telangiectasia and Rad3 related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT24_ECTSI)

HSP 1 Score: 484 bits (1246), Expect = 4.420e-153
Identity = 322/333 (96.70%), Postives = 326/333 (97.90%), Query Frame = 0 
Query:    1 SSRTTRDKIRAIQVLGRLVGFLSADEAGGLFPKVMATLQSALADPHGTSAQRRTAYRVMMGYILGLSDASLAENLSTIVVNVLALIEEVKSDDGDKASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGNRSAAKARKDNQNSRSDSDLLEEALAYSRTGPPVPSPRRVSVVGVKTAPRGLWGQRRGGGAGEQEKAEIRATAAALLRLLIVEKQDKMSTHFHKIPFMPQLXXXXXXGEVGAVLSRELGYQSLREQLGRLTPLLKDESTEVRRAALKHLALVVRRDKQHLAELVLEGGSGSSEVDPVVSRLLAGLLEMST 333
            SSRT+RDKIRAIQVLGRLVGFLSADEAGGLFPKVMATLQSALADPHGTSAQRRTAYRVMMGYILGLSDASLAENLSTIVVNVLALIEEVKSDDGDKASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX HGNRSAAKARK+  NSRSD+DLLEEALAYSRTGPPVPSPRRV VVGVKTA RG W QRRGGGAGEQEKAEIRATAAALLRLLIVEKQDKMSTHFHKIPFMPQLXXXXXXGEVGAVLSRELGYQSLREQLGRLTPLL+DESTEVRRAALKHLALVVRRDKQHLAELVLEGGSGSSEVDPVVSRLLAGLLEMST
Sbjct:   96 SSRTSRDKIRAIQVLGRLVGFLSADEAGGLFPKVMATLQSALADPHGTSAQRRTAYRVMMGYILGLSDASLAENLSTIVVNVLALIEEVKSDDGDKASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HGNRSAAKARKNYANSRSDTDLLEEALAYSRTGPPVPSPRRVPVVGVKTA-RGPWRQRRGGGAGEQEKAEIRATAAALLRLLIVEKQDKMSTHFHKIPFMPQLXXXXXXGEVGAVLSRELGYQSLREQLGRLTPLLRDESTEVRRAALKHLALVVRRDKQHLAELVLEGGSGSSEVDPVVSRLLAGLLEMST 426
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14145.3227.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT24_ECTSI4.420e-15396.70Similar to ataxia telangiectasia and Rad3 related ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012993UME domainPFAMPF08064UMEcoord: 3..84
e-value: 1.8E-5
score: 24.6
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 10..303

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14145contigEcto-sp13_S_contig14145:814..4499 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14145.3227.1mRNA_Ecto-sp13_S_contig14145.3227.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14145 813..4499 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14145.3227.1 ID=prot_Ecto-sp13_S_contig14145.3227.1|Name=mRNA_Ecto-sp13_S_contig14145.3227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=333bp
SSRTTRDKIRAIQVLGRLVGFLSADEAGGLFPKVMATLQSALADPHGTSA
QRRTAYRVMMGYILGLSDASLAENLSTIVVNVLALIEEVKSDDGDKASRR
RRRIGGGGRSGGARRAVIGDTTNKTPPSSKLLLLPRGGGRRHGNRSAAKA
RKDNQNSRSDSDLLEEALAYSRTGPPVPSPRRVSVVGVKTAPRGLWGQRR
GGGAGEQEKAEIRATAAALLRLLIVEKQDKMSTHFHKIPFMPQLPDLPSL
GEVGAVLSRELGYQSLREQLGRLTPLLKDESTEVRRAALKHLALVVRRDK
QHLAELVLEGGSGSSEVDPVVSRLLAGLLEMST
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012993UME
IPR016024ARM-type_fold