mRNA_Ecto-sp13_S_contig14145.3227.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14145.3227.1
Unique NamemRNA_Ecto-sp13_S_contig14145.3227.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14145.3227.1 vs. uniprot
Match: D7FT24_ECTSI (Similar to ataxia telangiectasia and Rad3 related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT24_ECTSI)

HSP 1 Score: 484 bits (1246), Expect = 4.420e-153
Identity = 322/333 (96.70%), Postives = 326/333 (97.90%), Query Frame = 1 
Query:    1 SSRTTRDKIRAIQVLGRLVGFLSADEAGGLFPKVMATLQSALADPHGTSAQRRTAYRVMMGYILGLSDASLAENLSTIVVNVLALIEEVKSDDGDKASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGNRSAAKARKDNQNSRSDSDLLEEALAYSRTGPPVPSPRRVSVVGVKTAPRGLWGQRRGGGAGEQEKAEIRATAAALLRLLIVEKQDKMSTHFHKIPFMPQLXXXXXXGEVGAVLSRELGYQSLREQLGRLTPLLKDESTEVRRAALKHLALVVRRDKQHLAELVLEGGSGSSEVDPVVSRLLAGLLEMST 999
            SSRT+RDKIRAIQVLGRLVGFLSADEAGGLFPKVMATLQSALADPHGTSAQRRTAYRVMMGYILGLSDASLAENLSTIVVNVLALIEEVKSDDGDKASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX HGNRSAAKARK+  NSRSD+DLLEEALAYSRTGPPVPSPRRV VVGVKTA RG W QRRGGGAGEQEKAEIRATAAALLRLLIVEKQDKMSTHFHKIPFMPQLXXXXXXGEVGAVLSRELGYQSLREQLGRLTPLL+DESTEVRRAALKHLALVVRRDKQHLAELVLEGGSGSSEVDPVVSRLLAGLLEMST
Sbjct:   96 SSRTSRDKIRAIQVLGRLVGFLSADEAGGLFPKVMATLQSALADPHGTSAQRRTAYRVMMGYILGLSDASLAENLSTIVVNVLALIEEVKSDDGDKASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HGNRSAAKARKNYANSRSDTDLLEEALAYSRTGPPVPSPRRVPVVGVKTA-RGPWRQRRGGGAGEQEKAEIRATAAALLRLLIVEKQDKMSTHFHKIPFMPQLXXXXXXGEVGAVLSRELGYQSLREQLGRLTPLLRDESTEVRRAALKHLALVVRRDKQHLAELVLEGGSGSSEVDPVVSRLLAGLLEMST 426
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14145.3227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT24_ECTSI4.420e-15396.70Similar to ataxia telangiectasia and Rad3 related ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14145contigEcto-sp13_S_contig14145:813..4499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score488.8
Seed ortholog evalue2e-135
Seed eggNOG ortholog2880.D7FT24
Model size1001
KEGG koko:K06640
KEGG Pathwayko03460,ko04110,ko04115,ko04214,ko04218,ko05165,ko05166,map03460,map04110,map04115,map04214,map04218,map05165,map05166
KEGG ModuleM00691
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0033554,GO:0034641,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564
Exons5
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0890@2759
EC2.7.11.1
Cds size999
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462755.7981148-CDS-Ecto-sp13_S_contig14145:813..9631681462755.7981148-CDS-Ecto-sp13_S_contig14145:813..963Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14145 814..963 -
1681462755.810982-CDS-Ecto-sp13_S_contig14145:1506..21181681462755.810982-CDS-Ecto-sp13_S_contig14145:1506..2118Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14145 1507..2118 -
1681462755.8206897-CDS-Ecto-sp13_S_contig14145:3084..32221681462755.8206897-CDS-Ecto-sp13_S_contig14145:3084..3222Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14145 3085..3222 -
1681462755.8301537-CDS-Ecto-sp13_S_contig14145:3758..38181681462755.8301537-CDS-Ecto-sp13_S_contig14145:3758..3818Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14145 3759..3818 -
1681462755.839916-CDS-Ecto-sp13_S_contig14145:4460..44991681462755.839916-CDS-Ecto-sp13_S_contig14145:4460..4499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14145 4461..4499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14145.3227.1prot_Ecto-sp13_S_contig14145.3227.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14145 814..4499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14145.3227.1

>prot_Ecto-sp13_S_contig14145.3227.1 ID=prot_Ecto-sp13_S_contig14145.3227.1|Name=mRNA_Ecto-sp13_S_contig14145.3227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=333bp
SSRTTRDKIRAIQVLGRLVGFLSADEAGGLFPKVMATLQSALADPHGTSA
QRRTAYRVMMGYILGLSDASLAENLSTIVVNVLALIEEVKSDDGDKASRR
RRRIGGGGRSGGARRAVIGDTTNKTPPSSKLLLLPRGGGRRHGNRSAAKA
RKDNQNSRSDSDLLEEALAYSRTGPPVPSPRRVSVVGVKTAPRGLWGQRR
GGGAGEQEKAEIRATAAALLRLLIVEKQDKMSTHFHKIPFMPQLPDLPSL
GEVGAVLSRELGYQSLREQLGRLTPLLKDESTEVRRAALKHLALVVRRDK
QHLAELVLEGGSGSSEVDPVVSRLLAGLLEMST
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mRNA from alignment at Ecto-sp13_S_contig14145:813..4499-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14145.3227.1 ID=mRNA_Ecto-sp13_S_contig14145.3227.1|Name=mRNA_Ecto-sp13_S_contig14145.3227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3687bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14145:813..4499- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAGCCGCACCACCAGGGACAAGATACGGGCGATTCAGGTGGGACGTGT
CGGCGTGCTTGCTTTTGTGGCATGCTCTCAGTATGAAAACCCTCTGATAT
CTGTTTATTTGCCTTGTTTCATCCGCACTGGTCCAGCAGACGCGAACCCT
TCCGTGGTCACAAGCTGACCTGCCGAAACAAGGTGTCTGTGGCTGTTATG
AAGAATCAAAACAGGACACAAGAGTGTCCAGAAAATGGGCATAAACGCGC
CAGAAAAAAACAAAACAGAAGTACTGCCCCAGACCGCACGATGTCGCCGG
CAACATGGACGGAAAAAGTGGAAATTAGATAGATGGATAGATAGTAGAGC
CAGAGAGAGATAGATGGAGCAGTCCGCGGAGACTCATTTCTTTTCCGATT
GAAAGAACAGTCATGCACAAGAGGGAGGGTGGGGTGCCTTGGTGAGAAAA
TAGGATTCCTCCTCGGTGTATCTCAGTGACGTATTGCGAGGCAACCAATT
ATTGCATGCAAGGCCCCGGCAAACCACTTGTTGCATGTATTGTGTAAGGC
CATCAAACGTGCATAGTACATTCAACTATTTGCACCACTTGCTGAGTAGT
TGTTCGCCACTGCTGTCTTTTTTTTGTTGCACTCCATTGCTGTATTTCCT
TTATTTGTACATCCCACTTGGTGGACTGTAGGTGTTAGGGCGACTCGTGG
GTTTCCTGTCGGCGGACGAAGCCGGAGGACTCTTCCCCAAGGTCAGAAAG
CTGCACCGTCGGCCAAAAATGCTCGTCATGTGAAATGCGTTGAGCGACAT
CAAGTTGCATAGCCCATAACCACACAGCAAGCAACCAGATTTCATGTTAT
GGTATCGGAGAAACATACCTGCTTAGTTGAAGTAGAAGGGTGTGGGTAAC
AATGAGTTCGACTTTAGCAAATACCCTGGGCTCCGTAGAATCAAGGGCTG
GTGATTTGAGGCCTAACACCGGCGAAGGTATGCTCTCGGTCGGGAGGTGT
GGCTAGGAAGGCCACCGCATTGCCGAGTTACTCAGACAGGCTTCATACAG
TGTACGTTGGTTGCGAGTGCAGAGAGCGACAGTGCCGTGGTGGACACACT
TTCCCGCGTCCAACGACCTACCGGATGGTCGCAGCAGTCGGCGGGCCACG
CTCGGTGAAGAATCCCCGGACCGTTGGACGAAACGTCCCACCGGTCTCCG
TTTATCGACCGTGCGTGCGTCTGTACCAGGAGAAATGCTTACGTCTTGGC
GCCACGATTGTTTTTGCCTTTTTCCAGGTGATGGCAACGCTTCAATCGGC
CCTTGCGGACCCTCACGGGACCTCGGCGCAGAGGCGAACCGCCTACCGTG
TCATGATGGGGTACATCCTGGGACTCAGCGACGCTTCCCTCGCGGAAAAT
CTCAGCACCATAGTGGTGAGAGATCACGAAGTCTTGCCCTCCTCCTTCAG
AGACGGTAGGTATTTTTCATCGGGGAGGGCGTCATCCCGTTTGGTATTCG
TCGCTCGAACTACGTGTGTACTCTAGCCGAAAAGTGTTCCGATCTGGCGT
TACACAGGATGATTCCCCGGCGGTGCACACCTTTCCATTTTCTCGCGAGA
AGGGTGAAACCGTCTTTCAAGTACACTCATGAATAAGTGCCCTCTGTCAA
CTACTTCGCGGATGGCCAAACGCATGTCCCAACCCAGCCGTTAGACAGTG
CACGAGGTTAGCATCTAGACGACCAACTAACCGATTGTTTTTTTGTTAAG
TTTTTGTCTTTTATATCGACATGATGCAATATTGTGTACCGTCTTACGTC
GTACGAATGTGGGTGAGAAGTATCAAAGAAAGTGAGGGACAAGGGTAGGA
AATTTATCTGGTTTTCCACTCTGTGAGTAGGATGTATTGCTGTTGATTTT
ATGCCTGGCATTTATTTTTTTCCCCTGGAATAGTCGGGAAGACGAGGTTG
GAACCCTTTCAACGTAAAGACGACAACAACAACAACAACAACAACACAAC
TACAACAGCAACCTTTCGTGCTTCCTCACAGTGTTTTGACAACATTGTCT
CATGCAGAAGGACAACCGGACGATGACACACCTTGAGTGTGAGCAACACT
ACTACTCTTGTAGTGAGCTATTTACTGGGCTAGTCTAGTGAGGGCCAGCA
ACCACAGGAGAAACTGTTCACACCGGAGGGCCCACCCCGGCTTCTTTTGC
TGGGGACGTGCATTAAACACCAAAACGCTCACGGCGGCAGTCAAGGCCGA
CCTTCTCTTCGATGTCGCCCTCGCCACCGTAAGCAGAAAAACACGCCGCT
CAACGTACTTCCTGTCGTCGGCGTACACCCACCCCGACGTCACGTGACAA
CGTACAACGCGCTAAAATCTGCGCACCACAGGTGAACGTGCTGGCCCTGA
TCGAGGAGGTCAAGTCGGACGACGGCGACAAAGCCAGCAGGCGCCGTCGC
CGCATTGGTGGTGGTGGCCGCAGTGGCGGCGCTCGCAGGGCCGTCATCGG
CGACACCACCAACAAGACGCCCCCGTCCTCCAAGCTTCTTCTTCTCCCCC
GCGGAGGTGGCCGCAGACACGGCAACAGGTCTGCCGCAAAGGCCAGGAAG
GACAACCAAAACAGCCGCAGCGACTCCGACCTGCTGGAGGAAGCCCTGGC
CTACAGCAGGACGGGACCGCCGGTTCCGTCCCCAAGACGGGTTTCCGTCG
TCGGCGTGAAGACGGCACCGCGAGGACTGTGGGGGCAGAGGAGGGGCGGT
GGGGCGGGGGAGCAGGAAAAAGCGGAGATCCGAGCGACGGCGGCGGCGCT
CCTCCGGCTCCTTATCGTGGAGAAGCAGGACAAGATGAGCACTCACTTCC
ACAAGATCCCGTTCATGCCCCAGCTGCCAGACCTGCCGTCGCTGGGGGAG
GTAGGGGCGGTACTCTCGAGGGAGTTGGGTTACCAGTCTCTCCGGGAGCA
GCTCGGCAGGCTGACGCCTCTTCTCAAGGACGAGAGCACCGAGGTGATTG
CTGGAAGGGCGGGGGAATGCGGTCTATCGTACAGTGGGAGCGGTTCGGTG
TGGATTTTTACAGCAGTGCGCAGAGGCTGGAGTGGACACCCCAACGTAGG
ATTCACCTTTTGGAGAGAGATAACCAACAATCATGTGTGTGTGTGGCGCC
CTGTTACGAGCTTCTTGTTGGAGACAAGGGCGATAAGATTTCGCACTATT
GTTCGTACCGCCACCATCCCGTGAGAGTACTGCTGTTGTTTTGGGTGTTC
TAGGTGTTCTGCCGTACCAGTATCGTCTCTAGCACGAATACGTTTCGGTT
ATTATGTGATGGTACGCCACAAGGTCTTCTGAAGTAACATTTCGTACGAA
TTGTTCCGAGCGGCTTGGGTCAGAAGGAACCGACCTTACCTTCATGGCCA
TTTTTAGGGCGGAAACAGGAGGAATGTCGCCCCCCACACCCATTAGATCG
AGAATATACCATCCAATCCAGATCAACGAACCCACCGACCTATTCCCAAC
AACGCGATTTAAACCACAATAAACCCACCAATTCAGGTCAGGCGGGCGGC
ACTGAAGCACCTCGCGCTGGTGGTCAGAAGAGACAAGCAGCACCTCGCCG
AGCTGGTGTTGGAAGGGGGTAGCGGCAGCAGTGAGGTGGACCCCGTGGTA
TCGAGACTTCTCGCAGGCCTGCTGGAGATGTCCACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14145:813..4499-

>mRNA_Ecto-sp13_S_contig14145.3227.1 ID=mRNA_Ecto-sp13_S_contig14145.3227.1|Name=mRNA_Ecto-sp13_S_contig14145.3227.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=999bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14145:813..4499- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAGCCGCACCACCAGGGACAAGATACGGGCGATTCAGGTGTTAGGGCG
ACTCGTGGGTTTCCTGTCGGCGGACGAAGCCGGAGGACTCTTCCCCAAGG
TGATGGCAACGCTTCAATCGGCCCTTGCGGACCCTCACGGGACCTCGGCG
CAGAGGCGAACCGCCTACCGTGTCATGATGGGGTACATCCTGGGACTCAG
CGACGCTTCCCTCGCGGAAAATCTCAGCACCATAGTGGTGAACGTGCTGG
CCCTGATCGAGGAGGTCAAGTCGGACGACGGCGACAAAGCCAGCAGGCGC
CGTCGCCGCATTGGTGGTGGTGGCCGCAGTGGCGGCGCTCGCAGGGCCGT
CATCGGCGACACCACCAACAAGACGCCCCCGTCCTCCAAGCTTCTTCTTC
TCCCCCGCGGAGGTGGCCGCAGACACGGCAACAGGTCTGCCGCAAAGGCC
AGGAAGGACAACCAAAACAGCCGCAGCGACTCCGACCTGCTGGAGGAAGC
CCTGGCCTACAGCAGGACGGGACCGCCGGTTCCGTCCCCAAGACGGGTTT
CCGTCGTCGGCGTGAAGACGGCACCGCGAGGACTGTGGGGGCAGAGGAGG
GGCGGTGGGGCGGGGGAGCAGGAAAAAGCGGAGATCCGAGCGACGGCGGC
GGCGCTCCTCCGGCTCCTTATCGTGGAGAAGCAGGACAAGATGAGCACTC
ACTTCCACAAGATCCCGTTCATGCCCCAGCTGCCAGACCTGCCGTCGCTG
GGGGAGGTAGGGGCGGTACTCTCGAGGGAGTTGGGTTACCAGTCTCTCCG
GGAGCAGCTCGGCAGGCTGACGCCTCTTCTCAAGGACGAGAGCACCGAGG
TCAGGCGGGCGGCACTGAAGCACCTCGCGCTGGTGGTCAGAAGAGACAAG
CAGCACCTCGCCGAGCTGGTGTTGGAAGGGGGTAGCGGCAGCAGTGAGGT
GGACCCCGTGGTATCGAGACTTCTCGCAGGCCTGCTGGAGATGTCCACA
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