mRNA_Ecto-sp13_S_contig14142.3226.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14142.3226.1
Unique NamemRNA_Ecto-sp13_S_contig14142.3226.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14142.3226.1 vs. uniprot
Match: D7G6H3_ECTSI (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6H3_ECTSI)

HSP 1 Score: 538 bits (1387), Expect = 3.980e-188
Identity = 303/367 (82.56%), Postives = 315/367 (85.83%), Query Frame = 1 
Query:    7 MTSRGLNATAGAAASARCIKIVVSIALLRDVVAWRNGACLQWLRGPPVSRQIRAHRRSRALPGSLSPHRDSWCRSPMDHPTTSRQRRCRLRSSSTVKDWPLAPQRSPSSTADFVDREEQEPVTALASVGALRNGRSGETTNRLAGDTEGDAHQTHGGSNRCRRKRQRXXQQLRLQTLGDIEVGAAEALSAMEANIVEAESLGLATAIRPSTGVGAAAAPSVVDNKANVANRERRQRQQQLLQVDGVVSTDEIATGDDVDTDLPRFGGQDVSCSGPGSFSEEHSSTSTRTRPAATGELEGSQLMADQAETLLQGGHSKAVQEIFASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETVPT 1107
            MTSRGLNA AGAA SARCI ++VSIA+LRDVVAWRNGACLQ LRGPPVS QIRAHRRS+ L GSLSPHRDS  +S   HPTTSR+RR RLRS STV DWPL+PQRSP ST D  DREE EPVTA+ASVGALRNG S ET N  A DT G AHQT GGSNRCRRKR  XX   RLQTLGDIEV AAE LSAME +IVEAESLGL TAIRPSTGVGAA AP VVDN+ANVANRERRQRQQQLLQVDGVVSTDEIAT DD DTDL R GG+DVSCSG G FSEE SSTSTR RP ATG LE SQLMA+QAETLLQGGHSKAVQE FASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETVPT
Sbjct:    1 MTSRGLNAAAGAAVSARCITLIVSIAVLRDVVAWRNGACLQRLRGPPVSGQIRAHRRSKGLSGSLSPHRDSGRQSAKHHPTTSRRRRGRLRSGSTVHDWPLSPQRSPPSTPDVADREEHEPVTAVASVGALRNGTSAETMNHRAADTVGLAHQTQGGSNRCRRKRXXXXXXXRLQTLGDIEVEAAEGLSAMEPSIVEAESLGLETAIRPSTGVGAAVAPGVVDNEANVANRERRQRQQQLLQVDGVVSTDEIATRDDADTDLSRSGGKDVSCSGSGFFSEERSSTSTRARPLATGGLESSQLMAEQAETLLQGGHSKAVQENFASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETVPT 367
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BLAST of mRNA_Ecto-sp13_S_contig14142.3226.1 vs. uniprot
Match: A0A6H5L744_9PHAE (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L744_9PHAE)

HSP 1 Score: 493 bits (1269), Expect = 1.250e-170
Identity = 275/322 (85.40%), Postives = 285/322 (88.51%), Query Frame = 1 
Query:  142 PPVSRQIRAHRRSRALPGSLSPHRDSWCRSPMDHPTTSRQRRCRLRSSSTVKDWPLAPQRSPSSTADFVDREEQEPVTALASVGALRNGRSGETTNRLAGDTEGDAHQTHGGSNRCRRKRQRXXQQLRLQTLGDIEVGAAEALSAMEANIVEAESLGLATAIRPSTGVGAAAAPSVVDNKANVANRERRQRQQQLLQVDGVVSTDEIATGDDVDTDLPRFGGQDVSCSGPGSFSEEHSSTSTRTRPAATGELEGSQLMADQAETLLQGGHSKAVQEIFASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETVPT 1107
            PPVSRQIRAHRRSRALPGSLSPHRDS C S  DHPTTSR+RRCRLRS STV DWPL PQRS SSTADFVDREEQEPVTA+ASVGALRNGRSGET N   GDT G AHQT GGSNRCRRKR  XX  LRLQTLG+IEVGAAEAL AMEANIVEAESLGL  AIRPSTGVGAA APS+VDN+ANVANRERR+RQQQLLQVDGVVSTDEIAT DDVD DL R GG+DVSCSG GSFSEE SSTST TRP+ATG LE SQLMA+QAETLLQG H+ AVQE FASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAET  T
Sbjct:   18 PPVSRQIRAHRRSRALPGSLSPHRDSGCHSAKDHPTTSRRRRCRLRSGSTVHDWPLPPQRSQSSTADFVDREEQEPVTAVASVGALRNGRSGETMNHRGGDTAGFAHQTQGGSNRCRRKRXXXXXXLRLQTLGNIEVGAAEALVAMEANIVEAESLGLEAAIRPSTGVGAAVAPSIVDNEANVANRERRKRQQQLLQVDGVVSTDEIATRDDVDADLYRSGGKDVSCSGSGSFSEERSSTSTGTRPSATGGLEASQLMAEQAETLLQGRHTNAVQENFASEVPKYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETATT 339
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14142.3226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6H3_ECTSI3.980e-18882.56CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A6H5L744_9PHAE1.250e-17085.40CMP/dCMP-type deaminase domain-containing protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14142contigEcto-sp13_S_contig14142:520..2919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score550.8
Seed ortholog evalue4.7e-154
Seed eggNOG ortholog2880.D7G6H3
Model size1109
KEGG rclassRC00477
KEGG koko:K11991,ko:K12193,ko:K15441
KEGG ReactionR10223
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ModuleM00412
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.deaminase activity
EggNOG OGsCOG0590@1,KOG1018@2759
EC3.5.4.33
Cds size1101
COG Functional cat.FJ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462755.7188869-CDS-Ecto-sp13_S_contig14142:519..5521681462755.7188869-CDS-Ecto-sp13_S_contig14142:519..552Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14142 520..552 -
1681462755.7293117-CDS-Ecto-sp13_S_contig14142:915..18501681462755.7293117-CDS-Ecto-sp13_S_contig14142:915..1850Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14142 916..1850 -
1681462755.7401137-CDS-Ecto-sp13_S_contig14142:2780..29131681462755.7401137-CDS-Ecto-sp13_S_contig14142:2780..2913Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14142 2781..2913 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462755.754612-UTR-Ecto-sp13_S_contig14142:2913..29191681462755.754612-UTR-Ecto-sp13_S_contig14142:2913..2919Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14142 2914..2919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14142.3226.1prot_Ecto-sp13_S_contig14142.3226.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14142 520..2913 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14142.3226.1

>prot_Ecto-sp13_S_contig14142.3226.1 ID=prot_Ecto-sp13_S_contig14142.3226.1|Name=mRNA_Ecto-sp13_S_contig14142.3226.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=367bp
MTSRGLNATAGAAASARCIKIVVSIALLRDVVAWRNGACLQWLRGPPVSR
QIRAHRRSRALPGSLSPHRDSWCRSPMDHPTTSRQRRCRLRSSSTVKDWP
LAPQRSPSSTADFVDREEQEPVTALASVGALRNGRSGETTNRLAGDTEGD
AHQTHGGSNRCRRKRQRRRQQLRLQTLGDIEVGAAEALSAMEANIVEAES
LGLATAIRPSTGVGAAAAPSVVDNKANVANRERRQRQQQLLQVDGVVSTD
EIATGDDVDTDLPRFGGQDVSCSGPGSFSEEHSSTSTRTRPAATGELEGS
QLMADQAETLLQGGHSKAVQEIFASEVPKYSEEDDDRFMRMALRLAGRAR
MEGEVPIGAILAETVPT
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mRNA from alignment at Ecto-sp13_S_contig14142:520..2919-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14142.3226.1 ID=mRNA_Ecto-sp13_S_contig14142.3226.1|Name=mRNA_Ecto-sp13_S_contig14142.3226.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2400bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14142:520..2919- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCAACATGACGAGCAGAGGGCTGAATGCTACTGCTGGAGCAGCAGCATC
GGCCAGATGCATAAAAATTGTTGTGTCAATCGCGTTGTTGCGAGATGTGG
TGGCCTGGCGGAACGGCGCCTGCCTCCAATGGCTGCGAGGCAAGTGGGCG
TGCACAGCAGTGCACCAGTTAGTGTACAGTCAGCAGTTGATACCGGGCAC
GTGTTATACCGGTGCTGCTGGGCGTACTTATACGAATTTCTTCGTATAGC
GGGGGCTGTAGAACCATGTTTACTCTATGCCTGTCTACTAGAATATGACA
TGTTCGCGGCCACGTTCAATGAGTAACAGACTGCCGTAGTGACACACGAT
ACCACACCCCCCGGCCCGATTTTGAGAGGTCGATTATGCCACCGTGAAGA
GTGGCAGTGCCGAAAATGGCGGCGTTGGAACGGTCTCATCGAGATCTTTT
CGGAAGATTACTACGTTATTCTGGTATTCTCTTCGTCGCGGAGTAGTCGA
GCTTTGAACAACGGTCCAGGGGGCGTGCTATCTTGTGTGGCCTACGGTAT
GTGTTGGCCATGGGTGGAACCCGATCGACCTGGGTGTTCTACAGTATTGC
CCATCAGGCACGCATAGATTGCATGCATATTTGCAGCCTGCACCTTGGCC
ATGTGCTTCAATGGCAACAGGGGAGCAGCGATATTTGTCGTCATCAGTGA
TGTATATAGAGAGCTACACGAGTCGCGAAGAGTTGCCTGCACCTCCCCCT
TCCGTCGGACTTGAGTCGATGCATGAAGAACACACGGTCGCAGCTGTGCA
CCACATCGACTGAACTATGTAGCAAGTCAGCGACGGACTGTTCGCTCAGT
GGTACCACGTAGTAAACTAGACAGTACACCCAGCGATACACCCAGCGATA
CCACTTTTGGCGTTTAATGACATCACCATCCGGTGTGGTATTCGCGGGGA
GAGTGTCTAGGTCACACCAGTGCCACCGAGAGAGTATCCTTCGTGAGCCT
TCTTTACCCGTAACTAAACCGGACACAACATTGGACCTCGTTCACCCAAC
ACCTGATACCCTTTCACAGGCCCACCAGTCTCGAGGCAGATACGCGCGCA
CCGCCGGTCAAGAGCCCTGCCGGGAAGTCTGTCTCCACATCGTGACTCCT
GGTGCCGAAGTCCAATGGACCATCCCACCACCTCTCGCCAGCGGAGATGT
CGATTGCGCAGTAGTAGCACTGTCAAGGACTGGCCGCTCGCACCCCAGCG
AAGCCCATCGAGTACCGCCGATTTCGTCGATCGCGAGGAACAGGAGCCGG
TAACAGCACTGGCAAGCGTTGGGGCTTTGCGAAATGGTAGAAGTGGAGAA
ACGACGAATCGTCTGGCCGGAGACACCGAAGGTGATGCCCACCAGACACA
TGGCGGAAGTAACCGATGCCGCAGAAAGCGGCAGCGGCGGCGGCAGCAGT
TGCGCCTGCAGACCTTAGGAGACATAGAGGTAGGAGCCGCGGAGGCTTTG
TCGGCGATGGAGGCTAACATCGTCGAGGCTGAGAGCTTGGGCCTTGCGAC
TGCAATTCGACCGAGCACCGGCGTCGGAGCAGCCGCGGCACCTAGCGTTG
TAGATAACAAGGCGAACGTTGCCAACAGGGAAAGACGTCAGCGGCAGCAG
CAGCTGCTGCAGGTGGATGGTGTCGTATCTACTGACGAGATTGCCACTGG
AGACGACGTGGACACCGACCTCCCCCGTTTTGGTGGGCAGGATGTGTCAT
GCTCAGGTCCTGGTTCGTTCTCTGAGGAACACAGCAGTACCAGCACCAGG
ACGAGGCCGGCGGCGACAGGAGAGTTGGAAGGCTCACAGCTGATGGCTGA
CCAGGCGGAAACCCTGCTTCAAGGAGGGCATTCGAAGGCCGTTCAAGAAA
TTTTCGCCTCAGAAGTCCCGAAGTATTCGGAGGAAGATGATGACCGATTC
ATGCGTATGGCTTTACGGTTGGCAGGACGAGCCCGCATGGAGGGTGAAGT
GCCGGTGAGTAACCCCCTTGGTTGTATCGCTTCGTTGGCCGCACAGCTGC
TAGCCACACTCGTTGTTTCTTTTTCATTCCGTTGCGAGTGACCTGCTGCA
TGCATGCGTTTGTGGCACGATAGGTTGGCATTGCGGTGTTCTCTTTTCAT
CGTCGAGCTGGCCTTTGATCGTGTTTTTGTTGCTCCCATGCATCCCAATC
GCGTGGCCGTTAGGAAGTCGACAGGAAGGCCACGTGTGCTTCCTAAAAGC
CCAATACGAAACAGTATTACTTTGGTCCAAGTGGTTATACCTTCATCGAT
GCCAACCTCTACCCCCTTCAACCGTCTGCTTGTGCACTTCCTTCTGTCGC
ATTGGGTATTTGTCCAGATCGGAGCTATTTTGGCGGAGACCGTGCCGACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14142:520..2919-

>mRNA_Ecto-sp13_S_contig14142.3226.1 ID=mRNA_Ecto-sp13_S_contig14142.3226.1|Name=mRNA_Ecto-sp13_S_contig14142.3226.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1101bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14142:520..2919- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAGCAGAGGGCTGAATGCTACTGCTGGAGCAGCAGCATCGGCCAG
ATGCATAAAAATTGTTGTGTCAATCGCGTTGTTGCGAGATGTGGTGGCCT
GGCGGAACGGCGCCTGCCTCCAATGGCTGCGAGGCCCACCAGTCTCGAGG
CAGATACGCGCGCACCGCCGGTCAAGAGCCCTGCCGGGAAGTCTGTCTCC
ACATCGTGACTCCTGGTGCCGAAGTCCAATGGACCATCCCACCACCTCTC
GCCAGCGGAGATGTCGATTGCGCAGTAGTAGCACTGTCAAGGACTGGCCG
CTCGCACCCCAGCGAAGCCCATCGAGTACCGCCGATTTCGTCGATCGCGA
GGAACAGGAGCCGGTAACAGCACTGGCAAGCGTTGGGGCTTTGCGAAATG
GTAGAAGTGGAGAAACGACGAATCGTCTGGCCGGAGACACCGAAGGTGAT
GCCCACCAGACACATGGCGGAAGTAACCGATGCCGCAGAAAGCGGCAGCG
GCGGCGGCAGCAGTTGCGCCTGCAGACCTTAGGAGACATAGAGGTAGGAG
CCGCGGAGGCTTTGTCGGCGATGGAGGCTAACATCGTCGAGGCTGAGAGC
TTGGGCCTTGCGACTGCAATTCGACCGAGCACCGGCGTCGGAGCAGCCGC
GGCACCTAGCGTTGTAGATAACAAGGCGAACGTTGCCAACAGGGAAAGAC
GTCAGCGGCAGCAGCAGCTGCTGCAGGTGGATGGTGTCGTATCTACTGAC
GAGATTGCCACTGGAGACGACGTGGACACCGACCTCCCCCGTTTTGGTGG
GCAGGATGTGTCATGCTCAGGTCCTGGTTCGTTCTCTGAGGAACACAGCA
GTACCAGCACCAGGACGAGGCCGGCGGCGACAGGAGAGTTGGAAGGCTCA
CAGCTGATGGCTGACCAGGCGGAAACCCTGCTTCAAGGAGGGCATTCGAA
GGCCGTTCAAGAAATTTTCGCCTCAGAAGTCCCGAAGTATTCGGAGGAAG
ATGATGACCGATTCATGCGTATGGCTTTACGGTTGGCAGGACGAGCCCGC
ATGGAGGGTGAAGTGCCGATCGGAGCTATTTTGGCGGAGACCGTGCCGAC
A
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