mRNA_Ecto-sp13_S_contig14141.3225.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14141.3225.1
Unique NamemRNA_Ecto-sp13_S_contig14141.3225.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14141.3225.1 vs. uniprot
Match: D7FJE7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE7_ECTSI)

HSP 1 Score: 324 bits (831), Expect = 6.860e-108
Identity = 168/173 (97.11%), Postives = 170/173 (98.27%), Query Frame = 1
Query:    1 MTSGMKLVLPMVVLNMGGEMVNILHQRLNAQNVVEDKRTAVLRDVISTMYAQQFVEELFKPQDMYSEKATKEVFYKLAHSSIMRLNESSMSKLFDLVTMGVKYQALSCAQPQQLLQVTLNHLETIKQMVPHLASRVDAVIETTIAAYRHLDTFGWMQLRQRLLEFFQGRRVKV 519
            MTSGMKLVLPMVVLNMGGEMVNILHQRLNAQNVVEDKRTAVLRDVI TMYA QFVEELFKPQDMYSEKATKEVFYKLAHSSIMRLNESSMSKLFDLVTMGVKYQALSCAQPQQLLQVTLNHLETIK+MVP LASRVDAVIETTIAAYRHLDTFGWMQLRQRLLEFFQGRRVK+
Sbjct:    1 MTSGMKLVLPMVVLNMGGEMVNILHQRLNAQNVVEDKRTAVLRDVIGTMYAHQFVEELFKPQDMYSEKATKEVFYKLAHSSIMRLNESSMSKLFDLVTMGVKYQALSCAQPQQLLQVTLNHLETIKEMVPPLASRVDAVIETTIAAYRHLDTFGWMQLRQRLLEFFQGRRVKI 173          
BLAST of mRNA_Ecto-sp13_S_contig14141.3225.1 vs. uniprot
Match: A0A6H5K0W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W9_9PHAE)

HSP 1 Score: 266 bits (680), Expect = 3.350e-89
Identity = 143/154 (92.86%), Postives = 145/154 (94.16%), Query Frame = 1
Query:    1 MTSGMKLVLPMVVLNMGGEMVNILHQRLNAQNVVEDKRTAVLRDVISTMYAQQFVEELFKPQDMYSEKATKEVFYKLAHSSIMRLNESSMSKLFDLVTMGVKYQALSCAQPQQLLQVTLNHLETIKQMVPHLASRVDAVIE-----TTIAAYRH 447
            MTSGMKLVLPMVVLNMGGEMVNILHQRLNAQNVVEDKRTAVLRDVISTMYA+QFVEELFKPQDMYSEKATKEVFYKLAHSSIMRLNESSMSKLFDLVTMGVKYQ LSCAQPQQLLQVTLNHLETIKQMVPHLASRVDAVIE     T+ A  RH
Sbjct:    1 MTSGMKLVLPMVVLNMGGEMVNILHQRLNAQNVVEDKRTAVLRDVISTMYARQFVEELFKPQDMYSEKATKEVFYKLAHSSIMRLNESSMSKLFDLVTMGVKYQVLSCAQPQQLLQVTLNHLETIKQMVPHLASRVDAVIEVGAHQTSFARLRH 154          
BLAST of mRNA_Ecto-sp13_S_contig14141.3225.1 vs. uniprot
Match: A0A7S2V690_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V690_9STRA)

HSP 1 Score: 198 bits (503), Expect = 4.150e-59
Identity = 101/169 (59.76%), Postives = 128/169 (75.74%), Query Frame = 1
Query:   19 LVLPMVVLNMGGEMVNILHQRLNAQNVVEDKRTAVLRDVISTMYAQQFVEELFKPQDMYSEKATKEVFYKLAHSSIMRLNESSMSKLFDLVTMGVKYQALSCAQPQQLLQVTLNHLETIKQMV--PHLASRVDAVIETTIAAYRHLDTFGWMQLRQRLLEFFQGRRVKV 519
            L +PM+V+NMGGEMV IL QRL AQ V  +K+T VL+DV+ TMY+  F+ ELFKPQ MY+  ATK++F KLAHSSIM+LNESSM KL+DL+TMGVKYQ L C QP+QLLQVTLNHLE +K +V  P + S V++  E  +  Y  L    W+ LRQ+LL FF+GR++KV
Sbjct:    4 LTMPMLVMNMGGEMVYILQQRLQAQQVPPEKKTKVLQDVVRTMYSTSFISELFKPQPMYTNTATKQIFDKLAHSSIMKLNESSMEKLYDLMTMGVKYQVLLCNQPEQLLQVTLNHLEALKVVVESPVVLSLVESAAEMAVETYGRLSAGDWIMLRQQLLAFFKGRKIKV 172          
BLAST of mRNA_Ecto-sp13_S_contig14141.3225.1 vs. uniprot
Match: A0A482SHP3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHP3_9ARCH)

HSP 1 Score: 188 bits (477), Expect = 3.600e-55
Identity = 94/172 (54.65%), Postives = 126/172 (73.26%), Query Frame = 1
Query:   10 GMKLVLPMVVLNMGGEMVNILHQRLNAQNVVEDKRTAVLRDVISTMYAQQFVEELFKPQDMYSEKATKEVFYKLAHSSIMRLNESSMSKLFDLVTMGVKYQALSCAQPQQLLQVTLNHLETIKQMVPH--LASRVDAVIETTIAAYRHLDTFGWMQLRQRLLEFFQGRRVKV 519
            G +L +P++VLNMGGEM+ ILHQRL AQN+ E+K   VL DV+ TMY   F+EELFKPQD+Y+  +TK++F KLAHSSIMRLN++SM KL+DL++MGVKYQ LSC  PQQ L VT+NHL+++ Q+V    +   + + +   I  Y  L    W+ L Q L++FFQGR+VKV
Sbjct:    3 GSQLAMPILVLNMGGEMIYILHQRLQAQNIPEEKARKVLEDVLKTMYTPVFLEELFKPQDVYTNASTKQIFDKLAHSSIMRLNKTSMEKLYDLMSMGVKYQLLSCTCPQQYLHVTINHLDSLMQLVESETVNPLIQSAVTKAIRTYALLSPANWLLLEQTLMQFFQGRKVKV 174          
BLAST of mRNA_Ecto-sp13_S_contig14141.3225.1 vs. uniprot
Match: A0A7S3HSD8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HSD8_9STRA)

HSP 1 Score: 186 bits (471), Expect = 1.050e-53
Identity = 96/172 (55.81%), Postives = 123/172 (71.51%), Query Frame = 1
Query:   10 GMKLVLPMVVLNMGGEMVNILHQRLNAQNVVEDKRTAVLRDVISTMYAQQFVEELFKPQDMYSEKATKEVFYKLAHSSIMRLNESSMSKLFDLVTMGVKYQALSCAQPQQLLQVTLNHLETIKQMVPH--LASRVDAVIETTIAAYRHLDTFGWMQLRQRLLEFFQGRRVKV 519
            G +L +P++VLNMGGEM+ IL+QRL AQNV  DK   VL DVI TMY   F+EELFKPQ++Y+  +TK++F KLAHSSIMRLN++SM KLFDL+TMGVKYQ +SC  P Q LQVTLNHL+ + +MV    +   +   I   I  Y  L    W+ L Q LL+FFQG+++KV
Sbjct:   14 GSQLAMPIIVLNMGGEMIYILNQRLQAQNVPLDKARKVLGDVIRTMYTPMFLEELFKPQEIYTMASTKQIFDKLAHSSIMRLNKTSMDKLFDLMTMGVKYQLISCRSPHQYLQVTLNHLDILAEMVKTEGVTDLIQVAISKAIELYTKLSNGNWLLLEQVLLQFFQGKKIKV 185          
BLAST of mRNA_Ecto-sp13_S_contig14141.3225.1 vs. uniprot
Match: A0A7S1GFF1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GFF1_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.610e-51
Identity = 91/172 (52.91%), Postives = 121/172 (70.35%), Query Frame = 1
Query:   10 GMKLVLPMVVLNMGGEMVNILHQRLNAQNVVEDKRTAVLRDVISTMYAQQFVEELFKPQDMYSEKATKEVFYKLAHSSIMRLNESSMSKLFDLVTMGVKYQALSCAQPQQLLQVTLNHLETIKQMVPHLA--SRVDAVIETTIAAYRHLDTFGWMQLRQRLLEFFQGRRVKV 519
            G  L +P++V+NMGGEMV IL QRL AQ++  +K   VL DV+ TMY+ +F+ ELFKPQ MYS ++T+++F +LAHSSIMRLN++SM KL+DL+TMG KYQ ++  QP  +LQVTLNHLE +K +V + A    VD  +  T+  Y  L T  W  L+  L  FFQ RRVKV
Sbjct:    5 GPLLAMPLLVINMGGEMVYILDQRLRAQSIPTEKCRKVLTDVVRTMYSAKFIAELFKPQTMYSNRSTRQIFDRLAHSSIMRLNQNSMDKLYDLMTMGFKYQIIAATQPSHVLQVTLNHLEAMKAIVDNRAVTDLVDNAMRLTVGTYSSLSTGDWFDLKHTLARFFQDRRVKV 176          
BLAST of mRNA_Ecto-sp13_S_contig14141.3225.1 vs. uniprot
Match: A0A7S0LTL1_9EUKA (Hypothetical protein n=2 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LTL1_9EUKA)

HSP 1 Score: 172 bits (435), Expect = 6.870e-49
Identity = 92/174 (52.87%), Postives = 121/174 (69.54%), Query Frame = 1
Query:    7 SGMKLVLPMVVLNMGGEMVNILHQRLNAQNVVEDKRTAVLRDVISTMYAQQFVEELFKPQDMYSEKATKEVFYKLAHSSIMRLNESSMSKLFDLVTMGVKYQALSCAQPQQLLQVTLNHLETIKQMVPH---LASRVDAVIETTIAAYRHLDTFGWMQLRQRLLEFFQGRRVKV 519
            + M   +PM+++NMGGEMV IL QRL AQNV  DK   VL+DV+ TM+  +F+ ELF+ QD YS  +T+++F +LAHSSIMRLNESSM KLFDL+TMG KYQ L+CA P +LLQVTLNHL  ++  V     +A+ VD VI TT + Y  +    +  L+Q L  FF  +R+KV
Sbjct:   27 AAMDAAMPMLIINMGGEMVYILEQRLQAQNVPIDKGKRVLQDVVRTMFNPKFIAELFRSQDAYSMASTRQIFDRLAHSSIMRLNESSMDKLFDLMTMGFKYQMLACAFPHELLQVTLNHLHELRSKVEDAVPVAALVDEVITTTNSKYASMSLADYAGLKQALCRFFSDKRIKV 200          
BLAST of mRNA_Ecto-sp13_S_contig14141.3225.1 vs. uniprot
Match: A0A7S2VKF9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2VKF9_9DINO)

HSP 1 Score: 167 bits (423), Expect = 1.140e-48
Identity = 88/168 (52.38%), Postives = 118/168 (70.24%), Query Frame = 1
Query:   25 LPMVVLNMGGEMVNILHQRLNAQNVVEDKRTAVLRDVISTMYAQQFVEELFKPQDMYSEKATKEVFYKLAHSSIMRLNESSMSKLFDLVTMGVKYQALSCAQPQQLLQVTLNHLETIKQMVPHLASRVDAVIETTIA---AYRHLDTFGWMQLRQRLLEFFQGRRVKV 519
            +P++++NMGGEMV IL QRL AQ + E K+  VL DV+ TMY  +F+EELFKPQ+MYS ++T+++F +LAHSSIMRLNESSM KLFDL+ MG KYQ +SC  PQ+L+ +T NHL+ +K  V   A+ V+ + E       AY  +    +  LRQ L  FFQ R+VKV
Sbjct:    4 MPLLIVNMGGEMVYILEQRLQAQKIPELKQQKVLSDVVRTMYYPRFIEELFKPQEMYSLQSTRQIFDRLAHSSIMRLNESSMDKLFDLMAMGFKYQVISCTSPQELVDITCNHLDVLKAWVSSHATVVELLDECARQLELAYGGMPKHEFSALRQSLCNFFQDRKVKV 171          
BLAST of mRNA_Ecto-sp13_S_contig14141.3225.1 vs. uniprot
Match: A0A7S0WP91_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WP91_9CHLO)

HSP 1 Score: 167 bits (424), Expect = 1.160e-48
Identity = 82/167 (49.10%), Postives = 120/167 (71.86%), Query Frame = 1
Query:   25 LPMVVLNMGGEMVNILHQRLNAQNVVEDKRTAVLRDVISTMYAQQFVEELFKPQDMYSEKATKEVFYKLAHSSIMRLNESSMSKLFDLVTMGVKYQALSCAQPQQLLQVTLNHLETIKQMV--PHLASRVDAVIETTIAAYRHLDTFGWMQLRQRLLEFFQGRRVKV 519
            +P++V+N+GGEM+ IL QRL AQN+  +K   VL DV+ TM++ +F+ E+ KP  +YS  +T+++F +LAHSSIMRL+ESSM KL+DL+TMG+KYQ LSC +P ++LQVT+NHL++I+  +  P +   V +  E     ++HL    W QLRQ L+ FF  RR+KV
Sbjct:    6 MPIIVINLGGEMLYILDQRLRAQNIPPEKSVKVLHDVVRTMFSTKFIAEVIKPAPIYSNASTRQIFERLAHSSIMRLSESSMDKLYDLMTMGLKYQLLSCKKPNEILQVTINHLQSIRTCIIDPSVIDLVTSCEEQLNMHFKHLRIGDWSQLRQALIGFFHDRRIKV 172          
BLAST of mRNA_Ecto-sp13_S_contig14141.3225.1 vs. uniprot
Match: A0A1V9YEZ8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YEZ8_9STRA)

HSP 1 Score: 169 bits (427), Expect = 6.360e-48
Identity = 87/175 (49.71%), Postives = 121/175 (69.14%), Query Frame = 1
Query:    1 MTSGMKLVLPMVVLNMGGEMVNILHQRLNAQNVVEDKRTAVLRDVISTMYAQQFVEELFKPQDMYSEKATKEVFYKLAHSSIMRLNESSMSKLFDLVTMGVKYQALSCAQPQQLLQVTLNHLETIKQMV--PHLASRVDAVIETTIAAYRHLDTFGWMQLRQRLLEFFQGRRVKV 519
            MTSG  L +PM+++NMGGEM+ +L QRL AQN+ EDK T VL DV+ TMY  +F+ ELF+P  MYS  +T+++F +LAHSSIMRLN+SSM KL+ L+ MG KY  L+C+   QL+QVT+NHL++IK +V      + ++  I  T   Y  L    ++ L+Q L+ FFQ  R+KV
Sbjct:    1 MTSGALLAMPMLLINMGGEMIYVLDQRLKAQNIPEDKSTKVLVDVVKTMYNTKFISELFRPHHMYSNLSTRQIFDRLAHSSIMRLNQSSMDKLYGLMRMGFKYNILACSSADQLVQVTMNHLQSIKTIVNAEEATTLIEEAIVLTANVYGSLSPGNFLLLKQHLVRFFQDVRIKV 175          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14141.3225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJE7_ECTSI6.860e-10897.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0W9_9PHAE3.350e-8992.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V690_9STRA4.150e-5959.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A482SHP3_9ARCH3.600e-5554.65Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3HSD8_9STRA1.050e-5355.81Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1GFF1_9STRA1.610e-5152.91Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S0LTL1_9EUKA6.870e-4952.87Hypothetical protein n=2 Tax=Coccolithus braarudii... [more]
A0A7S2VKF9_9DINO1.140e-4852.38Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A7S0WP91_9CHLO1.160e-4849.10Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A1V9YEZ8_9STRA6.360e-4849.71Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14141contigEcto-sp13_S_contig14141:1750..4138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score325.9
Seed ortholog evalue1.2e-86
Seed eggNOG ortholog2880.D7FJE7
Preferred nameOSCP1
Model size519
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005886,GO:0006996,GO:0008150,GO:0009925,GO:0009987,GO:0012505,GO:0016020,GO:0016043,GO:0016323,GO:0022607,GO:0030030,GO:0030031,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044782,GO:0045178,GO:0046983,GO:0060271,GO:0070925,GO:0071840,GO:0071944,GO:0098590,GO:0120031,GO:0120036
Exons5
EggNOG free text desc.Organic solute transport protein 1
EggNOG OGsKOG4033@1,KOG4033@2759
Cds size519
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462755.6399934-CDS-Ecto-sp13_S_contig14141:1749..19081681462755.6399934-CDS-Ecto-sp13_S_contig14141:1749..1908Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14141 1750..1908 +
1681462755.651848-CDS-Ecto-sp13_S_contig14141:2286..23551681462755.651848-CDS-Ecto-sp13_S_contig14141:2286..2355Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14141 2287..2355 +
1681462755.6613116-CDS-Ecto-sp13_S_contig14141:2797..28811681462755.6613116-CDS-Ecto-sp13_S_contig14141:2797..2881Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14141 2798..2881 +
1681462755.6723535-CDS-Ecto-sp13_S_contig14141:3246..33571681462755.6723535-CDS-Ecto-sp13_S_contig14141:3246..3357Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14141 3247..3357 +
1681462755.6872926-CDS-Ecto-sp13_S_contig14141:4042..41381681462755.6872926-CDS-Ecto-sp13_S_contig14141:4042..4138Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14141 4043..4138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14141.3225.1prot_Ecto-sp13_S_contig14141.3225.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14141 1750..4138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14141.3225.1

>prot_Ecto-sp13_S_contig14141.3225.1 ID=prot_Ecto-sp13_S_contig14141.3225.1|Name=mRNA_Ecto-sp13_S_contig14141.3225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=173bp
MTSGMKLVLPMVVLNMGGEMVNILHQRLNAQNVVEDKRTAVLRDVISTMY
AQQFVEELFKPQDMYSEKATKEVFYKLAHSSIMRLNESSMSKLFDLVTMG
VKYQALSCAQPQQLLQVTLNHLETIKQMVPHLASRVDAVIETTIAAYRHL
DTFGWMQLRQRLLEFFQGRRVKV
back to top

mRNA from alignment at Ecto-sp13_S_contig14141:1750..4138+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14141.3225.1 ID=mRNA_Ecto-sp13_S_contig14141.3225.1|Name=mRNA_Ecto-sp13_S_contig14141.3225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2389bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14141:1750..4138+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAGTGGTATGAAGCTCGTTCTCCCAATGGTGGTGCTGAACATGGG TGGAGAGATGGTCAATATTCTCCATCAGCGGTTGAACGCACAGAACGTGG TTGAAGACAAGAGAACCGCGGTGCTTCGCGACGTTATCAGCACCATGTAT GCTCAACAGGTACCGCCTACTCTATATTTGTTCTCGTCCGTCAAAAGTAA CTACCGCCGGGCAACGAGCTGGGGTCTCGCACCGGTCGGCAGTCGATGTA GAGATCTTGGATATTGTTGCCGCTTGAAGAGTCGCGGTGCGCTGGAGTAA TTCGTAGGCAGATTTTTGCGCTGGGTCTTGCGACGTTTGCACGTGCTCAA GGTATGGCCAATACCCTCTTTGGAGGACGTCGTGCGGCCTTTGTCGCAAG ATATACCCCCCGTCTTTTGACTCACCACAGCTACTTGCAGTGTAACACTC TAGAACAACAGCAGATGGCTGAGCATGCTCCCACCGCCCGCACAAATCTC ACACTTTCCTCCCCTCGTCGCTCCTTCTAAACGGTAGTTCGTGGAAGAGC TTTTCAAGCCGCAGGACATGTACAGCGAAAAAGCTACGAAAGAGGTCTTC TACAAGGTGTGTGAAAGGGCGTACACTCGTGGGCATTGACTCAACCTGTT TTCCGTCCAGAGCTTTATCTAGATGCATGGTTCCAGACGTGCTGCCCGCT CACGATCAAACGAAACACGAAGAAATCACGCGTGTTTTTTCTTCATTGGC CGCAAAGGGACGTGCATGTACACCCCACACGTACATATGCTTTAGGAAGC GTGTTGCTCGACGAAGCGTGGGCGAGATAACAAATGGCACGTGTTGGAAA ACTACACTTGGATGATGTTGGCAGCTACATGTATGTGAAGACTCGATTTT TCCCGGATGTTGCTCCCGGCTTCGGGGTCGTGAACCTACAGGTAGCGCTC GTTCTTAACACTTTTGTTAGCCAAAAGTACCGCTAACGCCGCTGTTGTTG TTGTTGTTGCCCGTTTCGCATGCGACTACTGATCTGCGGGGAGGGCAGCT TGCACACTCTTCAATTATGCGGCTAAACGAATCAAGCATGAGCAAGCTCT TTGACCTCGTCACCATGGGCGTCAAGTACCAGGTGCCACACAACGCTATG GTGTCCCACGGGGCCCACCACGTTTAACGTAATAGATCATACGGCATGCG TGCGTCCGGTAAAATGTGGCATCGGCGAAAGCGGCCACAGATTCATGTAG TGTAGAGTTTCTCGCTGAGAGGCTCCATGTGCATTGTGTAGCTGGTTCGA ATATCTCGGCATTGTACTCGGTAGAAGGCCCCCGACAGTACCCAGGTACA AGCGCTTCATGATTTGAACCAACAGCAGTACCTAGATGTGGCTCTTCAAC ACGATATCCGCACAACGAACGAACAAGAACACCGCCTTACATGAAATATT GTGTGCCGCCTGCGACTAATTTTTTCTTTTCTTGTCTTGGTTGACAGGCG TTGTCCTGTGCCCAGCCTCAGCAGCTGCTGCAGGTGACGCTCAACCACTT GGAGACTATAAAACAAATGGTGCCTCACCTCGCTTCCCGAGTCGACGCAG TTATCGAGGTTAGTGCCTGCCAAATAAATTTGGCTCGTCTTCGTAATTGC TGACTGTACCACCTCGAGTATTGACCAAGCTATCCCCACATACTGATGTC CGTTTCATCATCTGTCTTTCGAGAAGCTGCAAAGTTTGGGGTGTGGAAAG AAAACCCATACACACGAAGACTTGCGAAAATCGCACTTCCCTTTGGATGA TGGCGAGTTTTACACGCCGCCGAGGCCTGCGGCGAAACCCTGGTGCTATG TTCTTTACTGTGATTTTTTTGTTTTACGGACCTACTGATGTGCACGTAGG GGAGCATATTTGGCCAATGAGAATAGAGACGGGGCCGAGGTGACGCTGGT GATAGTTATGAGCGTGGCGCAGCACGGTAGAGCGTATCTTCAATCCGATT CGTGGAAATTCTAGAGAAAAATATTGAAAAGACTTCGAACAAGTCCCACG CGCGCAGTAGATAGTCTCGAACGTGGCGGGCCAAGGAGGCTTCCTATAAT CGCACACGTGTACTCAAATCACAGCCCACAGCAGAAACACGCACACGCAA TCGGTATTCGGTGCTTTCCCCCAGCCCCCCTCCGGCCGGAAGGTGCGGTC GTCCGAACAAAGAACGTTGAGCTCATGACAAACAGTTCCCTTCTTTCGTT CTGCGCTATCCATGACACGAACGTTTTTGCCGCTGCCTACCAGACGACGA TCGCAGCATACCGGCACCTGGACACGTTTGGTTGGATGCAACTCAGGCAA CGCTTGCTGGAGTTCTTTCAAGGCCGGCGCGTCAAGGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14141:1750..4138+

>mRNA_Ecto-sp13_S_contig14141.3225.1 ID=mRNA_Ecto-sp13_S_contig14141.3225.1|Name=mRNA_Ecto-sp13_S_contig14141.3225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14141:1750..4138+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAGTGGTATGAAGCTCGTTCTCCCAATGGTGGTGCTGAACATGGG
TGGAGAGATGGTCAATATTCTCCATCAGCGGTTGAACGCACAGAACGTGG
TTGAAGACAAGAGAACCGCGGTGCTTCGCGACGTTATCAGCACCATGTAT
GCTCAACAGTTCGTGGAAGAGCTTTTCAAGCCGCAGGACATGTACAGCGA
AAAAGCTACGAAAGAGGTCTTCTACAAGCTTGCACACTCTTCAATTATGC
GGCTAAACGAATCAAGCATGAGCAAGCTCTTTGACCTCGTCACCATGGGC
GTCAAGTACCAGGCGTTGTCCTGTGCCCAGCCTCAGCAGCTGCTGCAGGT
GACGCTCAACCACTTGGAGACTATAAAACAAATGGTGCCTCACCTCGCTT
CCCGAGTCGACGCAGTTATCGAGACGACGATCGCAGCATACCGGCACCTG
GACACGTTTGGTTGGATGCAACTCAGGCAACGCTTGCTGGAGTTCTTTCA
AGGCCGGCGCGTCAAGGTG
back to top