mRNA_Ecto-sp13_S_contig14137.3224.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14137.3224.1
Unique NamemRNA_Ecto-sp13_S_contig14137.3224.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14137.3224.1 vs. uniprot
Match: D8LI05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI05_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 7.800e-44
Identity = 123/139 (88.49%), Postives = 125/139 (89.93%), Query Frame = 1 
Query:    1 MPGHDEEHKGGAGRHEXXXXXXXXXXXXXXXXXXXGAPGAKGPGHTGGRRRHKAKXXXXXXXXXXXXXXXXXXXXXXXXXXEKCPGLQRAGRVAAKAWKKRTGAQGRIRDMTPAQKEEVREVVKQARVAFRDAHGLAHA 417
            MPGHDEEHKG AGRHEXXXXXXXXXXXXXXXXX   APG KGPG TGGRR HKAK      XXXXXXXXXXXXXXXXXXX EKCPGLQRAGRVAAKAWKKRTGAQGRIRDMTPAQK+EVREVVK+ARVAFRDAHGLAHA
Sbjct:    1 MPGHDEEHKG-AGRHEXXXXXXXXXXXXXXXXXEGEAPGGKGPGRTGGRRGHKAKRRPDDDXXXXXXXXXXXXXXXXXXXEEKCPGLQRAGRVAAKAWKKRTGAQGRIRDMTPAQKKEVREVVKKARVAFRDAHGLAHA 138
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BLAST of mRNA_Ecto-sp13_S_contig14137.3224.1 vs. uniprot
Match: D8LI04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI04_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.180e-14
Identity = 85/134 (63.43%), Postives = 97/134 (72.39%), Query Frame = 1 
Query:    1 MPGHDEEHKGGAGRHEXXXXXXXXXXXXXXXXXXXGAPGAKGPGHTGGRRRHKAKXXXXXXXXXXXXXXXXXXXXXXXXXXE---KCPGLQRAGRVAAKAWKKRTGAQGRIRDMTPAQKEEVREVVKQARVAFR 393
            MPGHDEEHKGGAGRHE XXXXXXXXXXXXX       PG + PG       HK K    XXXXXXXXXXXXXXXXXXXXXX    K PG++RAGRVA KAWKK  G  G+I+D+ P QK+++R   ++AR+AFR
Sbjct:    1 MPGHDEEHKGGAGRHEHXXXXXXXXXXXXXKHEGGPPPGGR-PGRXXXXXXHKGKRRPDXXXXXXXXXXXXXXXXXXXXXXXXXXKFPGVRRAGRVAGKAWKKEHGILGKIKDLNPQQKKDIRTAKREARMAFR 133
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14137.3224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI05_ECTSI7.800e-4488.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LI04_ECTSI2.180e-1463.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14137contigEcto-sp13_S_contig14137:895..3297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size696
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_001240.1
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462755.5693283-CDS-Ecto-sp13_S_contig14137:894..9931681462755.5693283-CDS-Ecto-sp13_S_contig14137:894..993Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14137 895..993 +
1681462755.579588-CDS-Ecto-sp13_S_contig14137:1875..20011681462755.579588-CDS-Ecto-sp13_S_contig14137:1875..2001Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14137 1876..2001 +
1681462755.5892463-CDS-Ecto-sp13_S_contig14137:2385..25081681462755.5892463-CDS-Ecto-sp13_S_contig14137:2385..2508Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14137 2386..2508 +
1681462755.603198-CDS-Ecto-sp13_S_contig14137:2949..30211681462755.603198-CDS-Ecto-sp13_S_contig14137:2949..3021Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14137 2950..3021 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462755.6122832-UTR-Ecto-sp13_S_contig14137:3021..32971681462755.6122832-UTR-Ecto-sp13_S_contig14137:3021..3297Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14137 3022..3297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14137.3224.1prot_Ecto-sp13_S_contig14137.3224.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14137 895..3021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14137.3224.1

>prot_Ecto-sp13_S_contig14137.3224.1 ID=prot_Ecto-sp13_S_contig14137.3224.1|Name=mRNA_Ecto-sp13_S_contig14137.3224.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
MPGHDEEHKGGAGRHEHGGKGEEEHHGRPGHKHEGGAPGAKGPGHTGGRR
RHKAKRRPDDDEDTDDEDSEDEDDGAGDEEEEKCPGLQRAGRVAAKAWKK
RTGAQGRIRDMTPAQKEEVREVVKQARVAFRDAHGLAHA*
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mRNA from alignment at Ecto-sp13_S_contig14137:895..3297+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14137.3224.1 ID=mRNA_Ecto-sp13_S_contig14137.3224.1|Name=mRNA_Ecto-sp13_S_contig14137.3224.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2403bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14137:895..3297+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGGACACGACGAAGAGCACAAGGGTGGTGCGGGTAGGCACGAGCA
CGGTGGCAAGGGAGAAGAAGAACACCACGGAAGGCCCGGACACAAGCACG
TGAGAACGACAAAAACATGCTCCACCCATCTTCCACCCCGAAAAGATGTA
GCGTGCATAGAATTGAGAATGTCGGTTCTTCATTCTGAGAGAGGGCACAA
GGCGGTCCGTGCTCAGAGGGTCCGAGTCCATTTCCCAAAAATACGCACAC
GTGAATATACACAGACAGAAAGAAACACGCGAGCGAGAGATTAACTAACG
ACTACAATACAGTGCGTGTACATCGGGATGGTATGATATATGGTAGTTTT
GTTGGCCCGCCTAAGGGCAGGCACGTCGTCGTGGGAGTTGACGGACGGGT
GTCGTGTCTGACTCCGGCGCGCATAAAATGGTCGCACCTTCTTGTGCCGC
GAGGTGCTGTGCGCACTGTCGCTCGAACTGTAGGAGTAGCTGCTACTTCA
GTGCGGCTCTACTCGCGTCGCGCATCGCCGACGACGCGATTACAGACGTG
TGTGTGTAAACACACGTGTCGTGCACGAGCGTCTCTTTCCATACCATCCC
TGTTCGCTGCTTTGTTCCCAAATAATCTGTGGACGAAGCTGTGGTTGAAG
TATGAGTTTTCCCAACGCCCGTCGTGCGTTGTCATCAACTCACGTCCCGG
CGAGTCAAAGAAAACGGTGCTAACGAAGAGAGGCAATTCCGGTAGAACTG
TTGTAGAACCCTTTTAGTGCGGCCTACCCAAATCCACCGACGTCGCCCAC
GATCCACGACAACTACCCCGTCCCTGCCCCCACTCGCCCTACTAGGAATG
GACGCCGTCGATCATCGCATGCGCACATTATCTCTCCAACGGCGCACGCG
ACTTACTACACGTGCTGCGCGCATCAATTTTTCCACCCCCAACGGTGTCC
CTTCATATTCTTCTGTTATCTGCCGTAGCAGGAGGGAGGGGCCCCCGGTG
CCAAGGGACCCGGCCACACGGGCGGTAGGCGGAGACACAAGGCAAAGAGG
CGCCCCGACGACGACGAAGACACTGACGACGAGGACTCTGAGGACGAGGA
TGATGGCGTAAGTATGCAACTGTAGCTGCTGTTGATTTATCATTGTGATG
GCTTTGCCCTTGTTCTTGACAGGGGACGATCCTTGTTTCAGGCCAAGGTG
TTCAGTAACCAAAGTCAAACCATCAGAAGACTATTCAGCGCAACCTATCT
AGAATCCAAAATCAAGCGGTTAGACTCCAGTCAGCGCTGACTGGTCTACT
GGTTTGATGACGGCCTCGAAAGGCACCCTAGTATGCCGATGATCTCCATG
GTACTGCTGGTCTGCATGGTGGTTAAAGGGTATTTTCGAGCGAGTTCCGT
CCTGTGGTCCTCCACCCCTCTTGCTTGTGGCCAACGGAAAATCCCCTCCC
CACCGCGGAACCATCCCCCGATGCCGCATCAATGAATTCAGGCTGGCGAC
GAGGAGGAGGAGAAGTGCCCCGGCTTGCAGAGGGCTGGTCGCGTCGCCGC
AAAGGCCTGGAAGAAGAGGACAGGCGCCCAGGGAAGGATCCGGGACATGA
CTCCGGCCCAGAAGGTAACGAAAATGAAAATTTCTCCGCAATTCCTGCCC
TAAACCACCTCATCATCCTTCAGACCCAAAACCAGTTGTTGTTGCTATGT
GCACGCGCTGAAGATGTCGGAAGGCCCTGCGTGCGCGACGAACACACGCA
CGGTTAACAAGACCCGACTGGGGGGACAACACTGACCTGAGTACATTGTC
AATTTCGCACACGCACACAAATGGGAGGGCAGTCTAGCCTCCCCCATGGG
CCCCCGTCGGGGGTCTCGGATCATGGCGTCTACTGTAGAAGCGTTTCTCC
CGCTCATATTGGCCGCTCTGAGCTTGACGTACTTTCACTGGTCAACCAAA
TCCCGCGGTCGATTCTACGAAATTGGAGCACATCTTCACACGAGGGGCGC
TGACCCCCTACCCCCCTCCTTCCCCTCGTTTGTAACGGCTGCGCCCCACT
TGCAGGAAGAAGTACGGGAGGTCGTGAAACAGGCTAGGGTGGCCTTCAGG
GATGCTCACGGGCTGGCCCATGCGTAAACGCTAGTGATAGAAACGCTGCC
TGATCGGCCCGAAAGAGGGCGCGCCCGCTGCAAACAGACCGAACAGCCAG
CGGTAGAACGAAACCGGAGCGGTCGAATTTATCTGTCAAGGAGTTTTGAA
AGGCGTCCGATCAAGGTTTCCGCCAGCAGGATTAGTTCTTGCTTTTCTAG
TGGAAACGAACTGTAGGCCTTTTTTTGTTTTTGTGATCACGGCGTTTCGT
TGGGTGTCGGCGCGATGGCTGGCGCATGACCCAAAACAGAGGGAACCTTC
GAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14137:895..3297+

>mRNA_Ecto-sp13_S_contig14137.3224.1 ID=mRNA_Ecto-sp13_S_contig14137.3224.1|Name=mRNA_Ecto-sp13_S_contig14137.3224.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14137:895..3297+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGGACACGACGAAGAGCACAAGGGTGGTGCGGGTAGGCACGAGCA
CGGTGGCAAGGGAGAAGAAGAACACCACGGAAGGCCCGGACACAAGCACG
AGGGAGGGGCCCCCGGTGCCAAGGGACCCGGCCACACGGGCGGTAGGCGG
AGACACAAGGCAAAGAGGCGCCCCGACGACGACGAAGACACTGACGACGA
GGACTCTGAGGACGAGGATGATGGCGCTGGCGACGAGGAGGAGGAGAAGT
GCCCCGGCTTGCAGAGGGCTGGTCGCGTCGCCGCAAAGGCCTGGAAGAAG
AGGACAGGCGCCCAGGGAAGGATCCGGGACATGACTCCGGCCCAGAAGGA
AGAAGTACGGGAGGTCGTGAAACAGGCTAGGGTGGCCTTCAGGGATGCTC
ACGGGCTGGCCCATGCGTAA
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