prot_Ecto-sp13_S_contig14136.3223.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14136.3223.1
Unique Nameprot_Ecto-sp13_S_contig14136.3223.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length736
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14136.3223.1 vs. uniprot
Match: D8LLY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY3_ECTSI)

HSP 1 Score: 668 bits (1723), Expect = 3.390e-224
Identity = 554/710 (78.03%), Postives = 572/710 (80.56%), Query Frame = 0 
Query:    1 MQGNHVGDAGAVALADGLVGGNKRGGRRRDGAAKQGSGSSSRKGPGLRSLNLAGNGIGCAGGGALAKALVGGXXXXXXXXXVVLEELELAGNALTLSASQAAAQAKSSSLYKSAGGALSSLLTTFVDESYYSSNTNSRGSGQDASALTPPSLGNPAGGVAERPLRCAVAELGEALAGQXXXXXXXXXXXXXXXXXXXXSLKALGLARTGLTERDAARLSAALRARPVDSPLEEVEVGLNGLSVKAAEAVRLAVESPTAPRDRSSSFDDDLDNSGGRGXXXXXXXXXXXXXXXDSAAPGGDAGEEPGLRSRRGXXXXXXXXXXXXRSARRSEVGEYVSPGGRVELGLFGKKVASFQQAGGSGRELDVEVFGKRVRFERTGGSPPSPRPGSSPPPSMATAEPDPWSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDGRGHEGWRDESRGGRGAAVLGSDDPENTSISSGADDTEDWDDXXXXXXXXXXXERGLDSSAAGKGKPGRRNPASRRNFNVRGXXXXXXXXXXX-TKTSGRRLWSSRDAGGEDDGEWAAGFEAVSAKETEEDCENGMDGSXXXXXXXXXXXXXXXXXXXXXXXXXXEWAAGFEAVSEEAESDCESAMSGGAGXXXXXXXXXXXREPSELRTE-GAEDSANGECAARFELASAKEAESGCESAMGSGGAESAEVEWEAGFRDSRSEQ 708
            +QGNHVGDAGAVALADGLVGGN RGGRR  GA+KQG   SSR+GPGLRS                       XXXXX    VVLEELELAGNALTLSASQAAAQAKSSSLYKSAGGALSSLLTTFVDESYY  N+N+RGS QDASALTPPSLGNPAGGVAERPLRCAVAELGEALAGQ    XXXXXXXXXXXX    SLKA+GLARTGLTERDAARL+AALRARPVDSPLEEVEVGLNGLSVKAAEA+RLAVESPTAP DRSSSF DDL+ +GGRG XXXXXXXXXX    D AAPG D   EPGLRSRRG            RSAR +EVGEYV PGG VELGLFGKK ASFQQAGGSGRELDVEVFGKRVRFERTGGSPPSPRPGSSP PSMATAEPDPWSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GRGHEG  D+SRGGRG AVLGSDDPEN SISS          XXXXXXXXXXX  GLDSSAAG+GKPG RNPASRRNFNVRGXXXXXXXXX   TK  GRR  SSRDAGG DDGEWAAGFE VSA+ETE D ENG    XXXXXXXXXXXXXXXXXXXXXXXXXX WAAGFEAVSEEAESDCESAM GG             RE    RTE GAEDS +GE AA FE  S +EAES CESAMG GGA SAEVEWE GFR+SR+EQ
Sbjct:  343 LQGNHVGDAGAVALADGLVGGNNRGGRRXXGASKQGI--SSRRGPGLRSXXXXXXXXXXXXX-XXXXXXXXXXXXXXGEGGVVLEELELAGNALTLSASQAAAQAKSSSLYKSAGGALSSLLTTFVDESYYGGNSNNRGSVQDASALTPPSLGNPAGGVAERPLRCAVAELGEALAGQGARGXXXXXXXXXXXXGCP-SLKAVGLARTGLTERDAARLAAALRARPVDSPLEEVEVGLNGLSVKAAEAIRLAVESPTAPHDRSSSFVDDLEKNGGRGRXXXXXXXXXXRH--DPAAPGVD---EPGLRSRRGTATAAPAEE---RSARGAEVGEYVPPGGSVELGLFGKKFASFQQAGGSGRELDVEVFGKRVRFERTGGSPPSPRPGSSPXPSMATAEPDPWSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGHEGGHDDSRGGRGPAVLGSDDPENASISSAXXXXXXXXXXXXXXXXXXXXXXGLDSSAAGRGKPGLRNPASRRNFNVRGXXXXXXXXXEPPTKIPGRRTRSSRDAGGADDGEWAAGFETVSAEETEADPENGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAAGFEAVSEEAESDCESAMGGGGAASAEVEWEDGFRES---RTEQGAEDSDDGEWAAGFEAVS-EEAESDCESAMGGGGAASAEVEWEDGFRESRTEQ 1036
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BLAST of mRNA_Ecto-sp13_S_contig14136.3223.1 vs. uniprot
Match: A0A6H5JEB8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEB8_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.870e-14
Identity = 69/106 (65.09%), Postives = 72/106 (67.92%), Query Frame = 0 
Query:    1 MQGNHVGDAGAVALADGLVGGNKRGGRRRDGAAKQGSGSSSRKGPGLRSLNLAGNGIGCAGGGALAKALVGGXXXXXXXXXVVLEELELAGNALTLSASQAAAQAK 106
            +QGNHVGDAGAVALADGLVGG+KRGGR     AKQGS  SSR+GPGLRSL                      XX   XX  VVLEELELAGNALTLSASQAAAQAK
Sbjct:  394 LQGNHVGDAGAVALADGLVGGSKRGGRXXXXXAKQGS--SSRRGPGLRSLXXXXXXXXXXX--XXXXXXXXXXXKGGXXGGVVLEELELAGNALTLSASQAAAQAK 495
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14136.3223.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLY3_ECTSI3.390e-22478.03Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JEB8_9PHAE1.870e-1465.09Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 1..20
e-value: 210.0
score: 0.7
coord: 197..224
e-value: 7.9
score: 10.8
coord: 44..71
e-value: 0.0054
score: 26.0
coord: 81..108
e-value: 41.0
score: 5.8
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 43..242
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 47..66
e-value: 0.26
score: 11.4
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..114
e-value: 2.5E-8
score: 35.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14136contigEcto-sp13_S_contig14136:228..3997 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14136.3223.1mRNA_Ecto-sp13_S_contig14136.3223.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14136 166..4000 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14136.3223.1 ID=prot_Ecto-sp13_S_contig14136.3223.1|Name=mRNA_Ecto-sp13_S_contig14136.3223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=736bp
MQGNHVGDAGAVALADGLVGGNKRGGRRRDGAAKQGSGSSSRKGPGLRSL
NLAGNGIGCAGGGALAKALVGGKGGGGEGGGVVLEELELAGNALTLSASQ
AAAQAKSSSLYKSAGGALSSLLTTFVDESYYSSNTNSRGSGQDASALTPP
SLGNPAGGVAERPLRCAVAELGEALAGQGTRGRGGGGSRGGGSGGGCSSL
KALGLARTGLTERDAARLSAALRARPVDSPLEEVEVGLNGLSVKAAEAVR
LAVESPTAPRDRSSSFDDDLDNSGGRGRQRPQRQRQHRRRRRDSAAPGGD
AGEEPGLRSRRGAAAAAAAAAAEERSARRSEVGEYVSPGGRVELGLFGKK
VASFQQAGGSGRELDVEVFGKRVRFERTGGSPPSPRPGSSPPPSMATAEP
DPWSDDDDGGGGVDDDCDLGGVSAAATDGSASFWSSSSEEDDHDDGRGHE
GWRDESRGGRGAAVLGSDDPENTSISSGADDTEDWDDGGETSDDGDDEER
GLDSSAAGKGKPGRRNPASRRNFNVRGGGGGGGGGDPPTKTSGRRLWSSR
DAGGEDDGEWAAGFEAVSAKETEEDCENGMDGSGATKVEWEDGFREWTTE
KGAEDSEDGEWAAGFEAVSEEAESDCESAMSGGAGESAEDEWEDGFREPS
ELRTEGAEDSANGECAARFELASAKEAESGCESAMGSGGAESAEVEWEAG
FRDSRSEQGAEDGEWAAGFELAETLRLTAAQPQPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf