mRNA_Ecto-sp13_S_contig14122.3220.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14122.3220.1
Unique NamemRNA_Ecto-sp13_S_contig14122.3220.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14122.3220.1 vs. uniprot
Match: D7G2K2_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K2_ECTSI)

HSP 1 Score: 497 bits (1279), Expect = 8.720e-164
Identity = 337/383 (87.99%), Postives = 342/383 (89.30%), Query Frame = 1 
Query:    1 MQGTAPPFPSAAPSPGRGADGDDXXXXXXXXPGTRGGGGRLPDPCRGGDGVGGGEKLYPIEGLGPPKQRGIHDRAIGGNVSSGRIAGRGGGSRLRSXXXXXXXXXXXXXXXXXXXXXRGHTRPSPGIAGPQPWAGQGMKKSTLRSKELLSGXXXXXXXXXXAXTXNXGRAEAVAGDGAAAGAAISLRDTAGSSNSISSSVSSHPSVAGLAGSLGAEGRAAAAAALGRDGGPVEADGGRGAXXXXXXXXXXXXXXXXXXXXXXXXXAVEDALLEQISRMYEELAKVRDEQDAARPGGQDGVNGATGRPRIILVSRRLPYKLQMTSSGRWTTEIPKADQALQSYRVVHDLMECIWVGWPGTYVEPGRECSLTDQLKDRRLVPIFL 1149
            MQGTAPPFPSAAPSP RGADG  XXXXXXXX G      RLPDP RG   VGGGEKLYPIEGLGPPKQRGIHDRAIGGNVSSGRIAGRGGGSRLRS XXXXXXXXXXXXXXXXXXXXRGHTRPSPGIAGPQPWAGQGMKKSTLRSKELLSG  XXXXXX  A T N GRAEA            SLR TAGSS+SISS++SSHPS A LAGSLGA+G+AAAAAALGRDGGPVEADGGRGAXXXXXXXXXXXXXXXXXXXXXX   AVEDALLEQISRMYEELAKVRDEQDAARPGGQDG NGATGRPRIILVSRRLPYKLQMTSSGRWTTEIPKADQALQSYRVVHDLMECIWVGWPGTYVEPGRECSLTDQLKDRRLVPIFL
Sbjct:    1 MQGTAPPFPSAAPSPRRGADGXXXXXXXXXXXG------RLPDPRRGXXXVGGGEKLYPIEGLGPPKQRGIHDRAIGGNVSSGRIAGRGGGSRLRSGXXXXXXXXXXXXXXXXXXXXRGHTRPSPGIAGPQPWAGQGMKKSTLRSKELLSGGGXXXXXXANAGTTNAGRAEAAEXXXXXXXXXXSLRGTAGSSSSISSNMSSHPSAAALAGSLGADGKAAAAAALGRDGGPVEADGGRGAXXXXXXXXXXXXXXXXXXXXXX---AVEDALLEQISRMYEELAKVRDEQDAARPGGQDGANGATGRPRIILVSRRLPYKLQMTSSGRWTTEIPKADQALQSYRVVHDLMECIWVGWPGTYVEPGRECSLTDQLKDRRLVPIFL 374
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BLAST of mRNA_Ecto-sp13_S_contig14122.3220.1 vs. uniprot
Match: A0A6H5JHZ0_9PHAE (GT20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ0_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 9.580e-64
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 1 
Query:  832 MYEELAKVRDEQDAARPGGQDGVNGATGRPRIILVSRRLPYKLQMTSSGRWTTEIPKADQALQSYRVVHDLMECIWVGWPGTYVEPGRECSLTDQLKDRRLVPIFL 1149
            MY++LAKVRDEQDAARPGGQDG NGATGRPRIILVSRRLPYKLQMT SGRWTTEIPKADQALQSYRVVHDLMECIWVGWPGTYVEPGRECSLTDQLKDRRLVPIFL
Sbjct:    1 MYKKLAKVRDEQDAARPGGQDGANGATGRPRIILVSRRLPYKLQMTPSGRWTTEIPKADQALQSYRVVHDLMECIWVGWPGTYVEPGRECSLTDQLKDRRLVPIFL 106
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BLAST of mRNA_Ecto-sp13_S_contig14122.3220.1 vs. uniprot
Match: A0A239AZS1_9BACT (Trehalose-6-phosphate synthase n=1 Tax=Hymenobacter mucosus TaxID=1411120 RepID=A0A239AZS1_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 9.220e-5
Identity = 28/77 (36.36%), Postives = 42/77 (54.55%), Query Frame = 1 
Query:  922 RIILVSRRLPYKLQMTSSGRWTTEIPKADQALQSYRVVHDLMECIWVGWPGTYVE-PGRECSLTDQLKDRRLVPIFL 1149
            R I++S RLP K+Q T+ G   T  P           ++   + +WVGWPG +VE P  E  +T+QL+   + P+FL
Sbjct:    3 RTIIISNRLPTKVQRTAKG--LTFQPSEGGLATGLGSIYQSGDNVWVGWPGLFVEDPAEEQHVTEQLQQDSMAPVFL 77
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14122.3220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G2K2_ECTSI8.720e-16487.99Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
A0A6H5JHZ0_9PHAE9.580e-6496.23GT20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
A0A239AZS1_9BACT9.220e-536.36Trehalose-6-phosphate synthase n=1 Tax=Hymenobacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14122contigEcto-sp13_S_contig14122:934..4306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score73.9
Seed ortholog evalue1.8e-10
Seed eggNOG ortholog653948.CCA15235
Model size1149
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K16055
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,map00500,map01100
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.trehalose biosynthetic process
EggNOG OGsCOG1877@1,KOG1050@2759
EC2.4.1.15,3.1.3.12
Cds size1149
COG Functional cat.G
CAZyGT20
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462755.2249684-CDS-Ecto-sp13_S_contig14122:933..10281681462755.2249684-CDS-Ecto-sp13_S_contig14122:933..1028Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14122 934..1028 +
1681462755.2352016-CDS-Ecto-sp13_S_contig14122:1067..18001681462755.2352016-CDS-Ecto-sp13_S_contig14122:1067..1800Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14122 1068..1800 +
1681462755.2437148-CDS-Ecto-sp13_S_contig14122:2845..29801681462755.2437148-CDS-Ecto-sp13_S_contig14122:2845..2980Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14122 2846..2980 +
1681462755.253786-CDS-Ecto-sp13_S_contig14122:3627..37081681462755.253786-CDS-Ecto-sp13_S_contig14122:3627..3708Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14122 3628..3708 +
1681462755.2675278-CDS-Ecto-sp13_S_contig14122:4201..43061681462755.2675278-CDS-Ecto-sp13_S_contig14122:4201..4306Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14122 4202..4306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14122.3220.1prot_Ecto-sp13_S_contig14122.3220.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14122 934..4306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14122.3220.1

>prot_Ecto-sp13_S_contig14122.3220.1 ID=prot_Ecto-sp13_S_contig14122.3220.1|Name=mRNA_Ecto-sp13_S_contig14122.3220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=383bp
MQGTAPPFPSAAPSPGRGADGDDAAAAAAASPGTRGGGGRLPDPCRGGDG
VGGGEKLYPIEGLGPPKQRGIHDRAIGGNVSSGRIAGRGGGSRLRSGGGV
SGGGGGVSGGGGGGGGGRGHTRPSPGIAGPQPWAGQGMKKSTLRSKELLS
GGGGSGGGGASAGTTNGGRAEAVAGDGAAAGAAISLRDTAGSSNSISSSV
SSHPSVAGLAGSLGAEGRAAAAAALGRDGGPVEADGGRGAAAAAAAAAAA
AAAAAAAASEKAKAKAVEDALLEQISRMYEELAKVRDEQDAARPGGQDGV
NGATGRPRIILVSRRLPYKLQMTSSGRWTTEIPKADQALQSYRVVHDLME
CIWVGWPGTYVEPGRECSLTDQLKDRRLVPIFL
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mRNA from alignment at Ecto-sp13_S_contig14122:934..4306+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14122.3220.1 ID=mRNA_Ecto-sp13_S_contig14122.3220.1|Name=mRNA_Ecto-sp13_S_contig14122.3220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3373bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14122:934..4306+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAAGGCACCGCTCCCCCTTTCCCGTCCGCCGCCCCGTCCCCGGGGCG
TGGAGCCGACGGCGACGACGCCGCCGCCGCCGCCGCCGCTTCGCCGTCGC
CGACGACAATCGCCAGCGCGAACGCTCTCGCGAGCGGCACCCGCGGCGGC
GGCGGCCGCCTGCCGGACCCGTGTAGAGGGGGGGACGGCGTTGGTGGGGG
CGAAAAGCTCTACCCAATAGAGGGTCTTGGCCCCCCGAAGCAGAGGGGCA
TCCACGACCGGGCGATAGGGGGGAACGTAAGCAGCGGCAGGATCGCTGGG
AGAGGGGGCGGGTCGAGGCTGCGGTCCGGCGGCGGCGTCAGCGGCGGCGG
CGGCGGCGTCAGTGGCGGCGGCGGCGGGGGCGGCGGGGGCAGGGGACACA
CCAGGCCCTCCCCCGGGATCGCCGGTCCACAGCCCTGGGCGGGGCAGGGA
ATGAAGAAGTCAACCCTCAGGTCGAAAGAGCTGCTTAGCGGTGGCGGCGG
CAGCGGCGGCGGCGGTGCAAGCGCCGGCACTACGAATGGCGGTCGTGCGG
AGGCGGTGGCGGGGGACGGGGCGGCGGCGGGGGCCGCCATTTCGTTGCGC
GATACGGCGGGCAGCAGTAATAGTATCAGTAGCAGTGTGAGTAGTCACCC
TTCTGTGGCAGGACTTGCGGGATCGTTGGGGGCGGAAGGGAGGGCGGCGG
CGGCGGCAGCTCTCGGCAGAGACGGAGGTCCCGTTGAGGCTGACGGGGGC
AGGGGCGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCGGCGGCGGC
GGCGGCGGCGGCTTCGGAGAAGGCTAAGGCCAAGGCTGTTGAGGATGCTC
TGCTCGAGCAGATATCGGTACGTGCGTGGGTGACGACGTGTTTACAGCCA
TTATAAAACTGTGTATTCCAGGGTCCCGAGCAAAACAAGAAACAAATCAA
AGAAAATATATGATGGGAGCATTCTATGTCCCAAACCTGGCGAACAGCCG
ACAATTCCTAGACCAGCAGAACAGAACAAGAGATTGTTGTAGAGAAGGTT
TTTGGTTCAAGACGTGCATGCTGTTCGATCAATACGTTAGCTTCTTCTCT
GAACTGTCTTTTTGCACGCTCCGGAGTGTTTTGGTGTTGAGTGCCAGATT
ATGTACGTCAAGCCCGGAGTTGGGCCGGTTAAATCCCCCCACCCTGTCGC
TCTCTTCTTTGCCGGTCGCGTCACCCCCATTTGGTTTTGTCGAAGGCACC
AAGAAGAAGTGTAGGTAGTGGATGCCACGATTGCCGTGACGGCACCGAGT
AGCAAGGCATCCTTCGTACGCACATGATTGCGTCACCGCTTCTTGGCGCG
GTAGGATGTTTCTCCTGCGAAGAGCTCTCCGTCATGCTGGCGTGTGCCTT
GTGTTGAAAAGGCGTTTAGAAACGCCAACCTATTTTGTCTGTCTGCTGGT
TCTCACCGCGAAGTCTGCTTAGTTGTTGTCTCCGTGAAGGCCCCCAAGTT
CGGAGCCAGAGCGCGACAACACCCTTTACTCTTATCACAGCACGCAAGGC
ATTAGGGTCAGCGTTATGGGTTATTGGGGTGATTTCAAATGGCCGCAATC
ATGCCTCACCCCCATCCCTCTCCTAGCTTTCTGTTCCATGTATCCTTCCC
TATTATGGGCATGGGGCCTCTGACCTCCCTGCCGTGCCTTCGCACAACAT
GGCAGACCCTTTATGCTGCATAAATAATATTCCCCCAAGATTTAGACGTG
CCCCGATGCAAAAGCACACCACGTGATTTTCCTGGCCAAGCGGCCGAATA
GGACGAACAGCTCCTGAATACGGCTCCCAACCATCCACCACCCTTCCGAC
AACTTTCCCCACCCCCTCTCCTGCCGGCTCTCTCTCTCGCGTACGCCACA
CAACCGCTCCAGAGGATGTACGAGGAGCTTGCCAAGGTTAGGGACGAGCA
GGACGCCGCCCGCCCCGGGGGGCAAGACGGCGTGAACGGCGCCACGGGGC
GGCCGCGGATCATCCTCGTCTCCCGCAGGCTGCCGTACAAGCTTCAGGTA
TGACCCCCACTCCTGTTGTGACCCCCTTTGATTATGGCCATCTACACATG
TTTGCGAGTTGTACATGTGATGCCTCCGGAGTCTGCTCATGAGAGCACAG
TGTCTTGAGAGGGTGACGCAAGATGAAAAATAAACTCAGGCACAACAGGA
CCAGCCCACAACTGGCTGCCAACTGCTACTTGTGACGTTGCCCACGCTAG
GCAGCGCACACATCTGGCGTGTATTGACTCGTAGTGTCACAGCAAACCTC
CACGAACCAAAAAGAAAGATTAACGTTAGGTTAACAAAATTTGCTGACAT
CTTCTTGTTTCGGGGGGTTCGAAATTTTGTTTTGTTTTTTACTGCCTCTT
CTTTTTTGTGTTTGGGGTCCGTTTTTTTAAACGAGATAGTGTTTATAACG
GGACACCAAATGGGTGACGGATTTCAGAGCTTTTTGATGTTCATTGGTGG
TATGGTGATGGTCGTGGTGGTCCTGGAGCATATGTGTAGACTACAGCGCA
AAGTGCTCCATCGCCAACACTTTCGGGTAGGTACACAAATCAGCGTTTCT
CCTCTACCATGTGTAGTATCTGTGATTCGCGTTTTTTTGTCTGCCGACCT
CTAACCCTTTTCGAAACCTTTTTTTTTTGCGGAAAATGCGCAAGATGACA
TCATCCGGCCGTTGGACGACGGAGATCCCGAAGGCGGACCAGGCGCTACA
GAGCTACAGGGTGGTGCACGATTTGGTGAGTAGTGGTATTGCAGCAGTGA
CTGCAGAGAAAAGGAGTGTATCTTCCGCTACCAGAGGGCGGTGCACTGTA
TGGTTTGATGAGTGGTGAGCACGGAGAGCGAAGAAAAGCAACCTCTTGTT
TTCCGGTGACCGGCCGCTTCTCTGACTACTCCGAGGATGACACTGAGTGC
TAACGGGAGAACATTGTTTTTCTTCCGTTACAGATTGGTCCACGATTTGA
TGAGGACTGGGTGCTGACTGGCAGTGGACGTGAAAAAGCAACCTCTTCTT
CAAGTTACCGGCCGCTACTCTGACTATAACAGCTCTTGGTGTCGCCTATT
TCCGAAGCTAATTGCGCTCGCCAACACCGTCTTGATTTTTAGGGAGTAAT
AGCACTTCGTGGGAACAACGGCTGTACAGCCTCGTCTCGTAAATGGTATG
AAGGTGATATACATGGTCAAGCGTAGTCCCCTTCCCCTATCCCGTCCTTC
CTTTCACGTTTTTCCCAGATGGAATGCATTTGGGTGGGGTGGCCCGGGAC
GTACGTAGAGCCCGGTCGGGAGTGCAGCCTCACGGACCAGCTCAAGGACC
GACGCCTTGTGCCGATATTTCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14122:934..4306+

>mRNA_Ecto-sp13_S_contig14122.3220.1 ID=mRNA_Ecto-sp13_S_contig14122.3220.1|Name=mRNA_Ecto-sp13_S_contig14122.3220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1149bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14122:934..4306+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAAGGCACCGCTCCCCCTTTCCCGTCCGCCGCCCCGTCCCCGGGGCG
TGGAGCCGACGGCGACGACGCCGCCGCCGCCGCCGCCGCTTCGCCCGGCA
CCCGCGGCGGCGGCGGCCGCCTGCCGGACCCGTGTAGAGGGGGGGACGGC
GTTGGTGGGGGCGAAAAGCTCTACCCAATAGAGGGTCTTGGCCCCCCGAA
GCAGAGGGGCATCCACGACCGGGCGATAGGGGGGAACGTAAGCAGCGGCA
GGATCGCTGGGAGAGGGGGCGGGTCGAGGCTGCGGTCCGGCGGCGGCGTC
AGCGGCGGCGGCGGCGGCGTCAGTGGCGGCGGCGGCGGGGGCGGCGGGGG
CAGGGGACACACCAGGCCCTCCCCCGGGATCGCCGGTCCACAGCCCTGGG
CGGGGCAGGGAATGAAGAAGTCAACCCTCAGGTCGAAAGAGCTGCTTAGC
GGTGGCGGCGGCAGCGGCGGCGGCGGTGCAAGCGCCGGCACTACGAATGG
CGGTCGTGCGGAGGCGGTGGCGGGGGACGGGGCGGCGGCGGGGGCCGCCA
TTTCGTTGCGCGATACGGCGGGCAGCAGTAATAGTATCAGTAGCAGTGTG
AGTAGTCACCCTTCTGTGGCAGGACTTGCGGGATCGTTGGGGGCGGAAGG
GAGGGCGGCGGCGGCGGCAGCTCTCGGCAGAGACGGAGGTCCCGTTGAGG
CTGACGGGGGCAGGGGCGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCG
GCGGCGGCGGCGGCGGCGGCGGCTTCGGAGAAGGCTAAGGCCAAGGCTGT
TGAGGATGCTCTGCTCGAGCAGATATCGAGGATGTACGAGGAGCTTGCCA
AGGTTAGGGACGAGCAGGACGCCGCCCGCCCCGGGGGGCAAGACGGCGTG
AACGGCGCCACGGGGCGGCCGCGGATCATCCTCGTCTCCCGCAGGCTGCC
GTACAAGCTTCAGATGACATCATCCGGCCGTTGGACGACGGAGATCCCGA
AGGCGGACCAGGCGCTACAGAGCTACAGGGTGGTGCACGATTTGATGGAA
TGCATTTGGGTGGGGTGGCCCGGGACGTACGTAGAGCCCGGTCGGGAGTG
CAGCCTCACGGACCAGCTCAAGGACCGACGCCTTGTGCCGATATTTCTG
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