prot_Ecto-sp13_S_contig1412.3216.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1412.3216.1
Unique Nameprot_Ecto-sp13_S_contig1412.3216.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length405
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1412.3216.1 vs. uniprot
Match: D8LSZ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSZ4_ECTSI)

HSP 1 Score: 530 bits (1365), Expect = 1.200e-185
Identity = 343/380 (90.26%), Postives = 350/380 (92.11%), Query Frame = 0 
Query:   26 MRRARRRCWSVTLALLLTYAVVSTILFLQPPLQPVGPSTKPSTTKPSTTISGNQLTRQQPRLRSASGADSIVFVALGPAARSASLLYALTSLREEGGWDGQVHVIVEREDDLACLSSYLRQSVTAIAVAPXXXXXXXGGSLHSGGGDTSGVVQNAKMAKMKLLDLLPPSVERMVYVDCDVVTQRPLKPFLDAVAREWDELDRKAXXXXXXXXXXXXXXXXXXXXXXXXXXVVHSRLRGRRDNGDVVFAXXXXXXXXXXXXXXXXXXXXXXXXTVMIFADAGGHTVPVCRGCDRAHSGVVAVARGHSEQCLKLWHDAFEGDGAGNGGTSTDQEALDAALGEGSGCEAIMMGRRHLSFMKDAFVMAGLTRTSTFGHYTGLLH 405
            MRRARRRCWSV LALLLTYAVVST+LFL+PPL PVGPSTKPSTT     ISGNQ TRQQPRLRSASGADSIVFVALGPAARSASLLYALTSLREEGGWDGQVHV+VEREDDLACLSSYLRQSVTAIA+APXXXXXXXGGSLHSGGGDT GVVQNAKMAKMKLLDLLPPSVER+VYVDCDVVTQRPL PFLDAVAREWDELDRKAXXXXXXXXXXXXXXXXXXXXXXXXXX                  XXXXXXXXXXXXXXXXXXXXXXX TVMIFADAGGHTVPVCRGCDRAHSGVVA+ARGHSE+CLKLWHDAFEGDGAGNGGTSTDQEALDAALGEGSGCEAIMMGR HLSFMKDAFVMAGLTRTSTFGHYTGLLH
Sbjct:    1 MRRARRRCWSVALALLLTYAVVSTVLFLRPPLHPVGPSTKPSTT-----ISGNQRTRQQPRLRSASGADSIVFVALGPAARSASLLYALTSLREEGGWDGQVHVVVEREDDLACLSSYLRQSVTAIAIAPXXXXXXXGGSLHSGGGDTRGVVQNAKMAKMKLLDLLPPSVERVVYVDCDVVTQRPLGPFLDAVAREWDELDRKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-TVMIFADAGGHTVPVCRGCDRAHSGVVALARGHSERCLKLWHDAFEGDGAGNGGTSTDQEALDAALGEGSGCEAIMMGRWHLSFMKDAFVMAGLTRTSTFGHYTGLLH 374
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1412.3216.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSZ4_ECTSI1.200e-18590.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 54..405
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 33..53
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..32
NoneNo IPR availableTMHMMTMhelixcoord: 33..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1412contigEcto-sp13_S_contig1412:829..2054 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1412.3216.1mRNA_Ecto-sp13_S_contig1412.3216.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1412 829..2056 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1412.3216.1 ID=prot_Ecto-sp13_S_contig1412.3216.1|Name=mRNA_Ecto-sp13_S_contig1412.3216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=405bp
TTTTTDDAAPTNFSHHILTTSRTHQMRRARRRCWSVTLALLLTYAVVSTI
LFLQPPLQPVGPSTKPSTTKPSTTISGNQLTRQQPRLRSASGADSIVFVA
LGPAARSASLLYALTSLREEGGWDGQVHVIVEREDDLACLSSYLRQSVTA
IAVAPPPPPPSPGGSLHSGGGDTSGVVQNAKMAKMKLLDLLPPSVERMVY
VDCDVVTQRPLKPFLDAVAREWDELDRKAAAAAAAAAATAAVGGPATTRP
PPKNGVVHSRLRGRRDNGDVVFAPPPQPMSGDGDTNRRPPPPPPPPSTVM
IFADAGGHTVPVCRGCDRAHSGVVAVARGHSEQCLKLWHDAFEGDGAGNG
GTSTDQEALDAALGEGSGCEAIMMGRRHLSFMKDAFVMAGLTRTSTFGHY
TGLLH
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