mRNA_Ecto-sp13_S_contig1412.3216.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1412.3216.1
Unique NamemRNA_Ecto-sp13_S_contig1412.3216.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1412.3216.1 vs. uniprot
Match: D8LSZ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSZ4_ECTSI)

HSP 1 Score: 530 bits (1365), Expect = 1.200e-185
Identity = 343/380 (90.26%), Postives = 350/380 (92.11%), Query Frame = 1 
Query:   76 MRRARRRCWSVTLALLLTYAVVSTILFLQPPLQPVGPSTKPSTTKPSTTISGNQLTRQQPRLRSASGADSIVFVALGPAARSASLLYALTSLREEGGWDGQVHVIVEREDDLACLSSYLRQSVTAIAVAPXXXXXXXGGSLHSGGGDTSGVVQNAKMAKMKLLDLLPPSVERMVYVDCDVVTQRPLKPFLDAVAREWDELDRKAXXXXXXXXXXXXXXXXXXXXXXXXXXVVHSRLRGRRDNGDVVFAXXXXXXXXXXXXXXXXXXXXXXXXTVMIFADAGGHTVPVCRGCDRAHSGVVAVARGHSEQCLKLWHDAFEGDGAGNGGTSTDQEALDAALGEGSGCEAIMMGRRHLSFMKDAFVMAGLTRTSTFGHYTGLLH 1215
            MRRARRRCWSV LALLLTYAVVST+LFL+PPL PVGPSTKPSTT     ISGNQ TRQQPRLRSASGADSIVFVALGPAARSASLLYALTSLREEGGWDGQVHV+VEREDDLACLSSYLRQSVTAIA+APXXXXXXXGGSLHSGGGDT GVVQNAKMAKMKLLDLLPPSVER+VYVDCDVVTQRPL PFLDAVAREWDELDRKAXXXXXXXXXXXXXXXXXXXXXXXXXX                  XXXXXXXXXXXXXXXXXXXXXXX TVMIFADAGGHTVPVCRGCDRAHSGVVA+ARGHSE+CLKLWHDAFEGDGAGNGGTSTDQEALDAALGEGSGCEAIMMGR HLSFMKDAFVMAGLTRTSTFGHYTGLLH
Sbjct:    1 MRRARRRCWSVALALLLTYAVVSTVLFLRPPLHPVGPSTKPSTT-----ISGNQRTRQQPRLRSASGADSIVFVALGPAARSASLLYALTSLREEGGWDGQVHVVVEREDDLACLSSYLRQSVTAIAIAPXXXXXXXGGSLHSGGGDTRGVVQNAKMAKMKLLDLLPPSVERVVYVDCDVVTQRPLGPFLDAVAREWDELDRKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-TVMIFADAGGHTVPVCRGCDRAHSGVVALARGHSERCLKLWHDAFEGDGAGNGGTSTDQEALDAALGEGSGCEAIMMGRWHLSFMKDAFVMAGLTRTSTFGHYTGLLH 374
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1412.3216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSZ4_ECTSI1.200e-18590.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1412contigEcto-sp13_S_contig1412:829..2056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score530.4
Seed ortholog evalue7.3e-148
Seed eggNOG ortholog2880.D8LSZ4
Model size1217
Hectar predicted targeting categorysignal anchor
Exons2
EggNOG OGs2EYNU@1,2T04Z@2759
Ec32 ortholog descriptionNucleotide-diphospho-sugar transferases
Ec32 orthologEc-26_001980.1
Cds size1215
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462754.933525-CDS-Ecto-sp13_S_contig1412:828..16911681462754.933525-CDS-Ecto-sp13_S_contig1412:828..1691Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1412 829..1691 +
1681462754.9480066-CDS-Ecto-sp13_S_contig1412:1702..20541681462754.9480066-CDS-Ecto-sp13_S_contig1412:1702..2054Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1412 1703..2054 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1412.3216.1prot_Ecto-sp13_S_contig1412.3216.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1412 829..2054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1412.3216.1

>prot_Ecto-sp13_S_contig1412.3216.1 ID=prot_Ecto-sp13_S_contig1412.3216.1|Name=mRNA_Ecto-sp13_S_contig1412.3216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=405bp
TTTTTDDAAPTNFSHHILTTSRTHQMRRARRRCWSVTLALLLTYAVVSTI
LFLQPPLQPVGPSTKPSTTKPSTTISGNQLTRQQPRLRSASGADSIVFVA
LGPAARSASLLYALTSLREEGGWDGQVHVIVEREDDLACLSSYLRQSVTA
IAVAPPPPPPSPGGSLHSGGGDTSGVVQNAKMAKMKLLDLLPPSVERMVY
VDCDVVTQRPLKPFLDAVAREWDELDRKAAAAAAAAAATAAVGGPATTRP
PPKNGVVHSRLRGRRDNGDVVFAPPPQPMSGDGDTNRRPPPPPPPPSTVM
IFADAGGHTVPVCRGCDRAHSGVVAVARGHSEQCLKLWHDAFEGDGAGNG
GTSTDQEALDAALGEGSGCEAIMMGRRHLSFMKDAFVMAGLTRTSTFGHY
TGLLH
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mRNA from alignment at Ecto-sp13_S_contig1412:829..2056+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1412.3216.1 ID=mRNA_Ecto-sp13_S_contig1412.3216.1|Name=mRNA_Ecto-sp13_S_contig1412.3216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1412:829..2056+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACAACAACAACAACGGACGACGCAGCCCCCACTAATTTCTCCCACCACAT
CCTCACAACTTCGAGAACACATCAGATGCGACGAGCGAGACGCAGGTGCT
GGTCCGTCACCCTGGCCCTCCTGCTAACGTACGCCGTCGTCAGCACCATC
CTTTTCTTGCAGCCTCCGCTCCAACCGGTCGGCCCCTCCACCAAACCCAG
CACCACCAAACCCAGCACCACCATCTCCGGCAACCAGCTGACACGACAAC
AACCCAGGCTCCGATCGGCTTCGGGGGCCGACTCGATCGTTTTCGTTGCC
CTGGGTCCCGCGGCGCGGTCGGCCTCGCTACTGTACGCCCTGACGTCGCT
TAGAGAGGAGGGAGGCTGGGACGGCCAGGTGCACGTGATCGTTGAGCGCG
AGGACGACCTGGCCTGCCTCTCGTCGTACCTCCGCCAGTCCGTCACGGCC
ATCGCTGTCGCACCACCGCCGCCGCCGCCCTCGCCCGGCGGGAGTCTTCA
TTCCGGTGGTGGGGACACCAGCGGGGTGGTGCAGAACGCCAAGATGGCGA
AGATGAAGCTCCTGGACCTTCTTCCGCCCTCGGTCGAGCGCATGGTGTAC
GTGGACTGCGACGTCGTCACCCAGCGGCCTCTCAAGCCTTTCCTCGACGC
CGTCGCCCGCGAGTGGGACGAGCTGGACAGAAAAGCGGCAGCGGCAGCGG
CAGCGGCAGCGGCGACAGCTGCGGTGGGAGGTCCAGCGACAACCAGGCCG
CCGCCAAAAAATGGAGTAGTTCACTCACGCTTGCGAGGAAGGCGTGATAA
TGGAGACGTAGTATTTGCTCCTCCTCCTCAGCCGATGAGCGGCGACGGTG
ACACCAACCGACGCAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGT
CAACAGTGATGATCTTCGCGGACGCGGGCGGGCACACGGTCCCCGTTTGC
CGAGGCTGCGACCGGGCGCACTCGGGGGTGGTGGCCGTGGCGCGTGGGCA
CTCCGAGCAGTGCCTGAAGCTTTGGCACGACGCTTTCGAGGGCGACGGCG
CGGGGAACGGGGGCACGTCCACTGACCAAGAAGCGCTGGACGCGGCGCTC
GGGGAGGGGTCGGGATGCGAGGCAATTATGATGGGCCGGCGGCACCTCTC
GTTCATGAAGGACGCGTTTGTCATGGCCGGGCTGACGAGGACGAGCACGT
TTGGCCACTACACGGGGCTGCTTCACCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1412:829..2056+

>mRNA_Ecto-sp13_S_contig1412.3216.1 ID=mRNA_Ecto-sp13_S_contig1412.3216.1|Name=mRNA_Ecto-sp13_S_contig1412.3216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1215bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1412:829..2056+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACAACAACAACAACGGACGACGCAGCCCCCACTAATTTCTCCCACCACAT
CCTCACAACTTCGAGAACACATCAGATGCGACGAGCGAGACGCAGGTGCT
GGTCCGTCACCCTGGCCCTCCTGCTAACGTACGCCGTCGTCAGCACCATC
CTTTTCTTGCAGCCTCCGCTCCAACCGGTCGGCCCCTCCACCAAACCCAG
CACCACCAAACCCAGCACCACCATCTCCGGCAACCAGCTGACACGACAAC
AACCCAGGCTCCGATCGGCTTCGGGGGCCGACTCGATCGTTTTCGTTGCC
CTGGGTCCCGCGGCGCGGTCGGCCTCGCTACTGTACGCCCTGACGTCGCT
TAGAGAGGAGGGAGGCTGGGACGGCCAGGTGCACGTGATCGTTGAGCGCG
AGGACGACCTGGCCTGCCTCTCGTCGTACCTCCGCCAGTCCGTCACGGCC
ATCGCTGTCGCACCACCGCCGCCGCCGCCCTCGCCCGGCGGGAGTCTTCA
TTCCGGTGGTGGGGACACCAGCGGGGTGGTGCAGAACGCCAAGATGGCGA
AGATGAAGCTCCTGGACCTTCTTCCGCCCTCGGTCGAGCGCATGGTGTAC
GTGGACTGCGACGTCGTCACCCAGCGGCCTCTCAAGCCTTTCCTCGACGC
CGTCGCCCGCGAGTGGGACGAGCTGGACAGAAAAGCGGCAGCGGCAGCGG
CAGCGGCAGCGGCGACAGCTGCGGTGGGAGGTCCAGCGACAACCAGGCCG
CCGCCAAAAAATGGAGTAGTTCACTCACGCTTGCGAGGAAGGCGTGATAA
TGGAGACGTAGTATTTGCTCCTCCTCCTCAGCCGATGAGCGGCGACGGTG
ACACCAACCGACGGCCGCCGCCGCCGCCGCCGCCGCCGTCAACAGTGATG
ATCTTCGCGGACGCGGGCGGGCACACGGTCCCCGTTTGCCGAGGCTGCGA
CCGGGCGCACTCGGGGGTGGTGGCCGTGGCGCGTGGGCACTCCGAGCAGT
GCCTGAAGCTTTGGCACGACGCTTTCGAGGGCGACGGCGCGGGGAACGGG
GGCACGTCCACTGACCAAGAAGCGCTGGACGCGGCGCTCGGGGAGGGGTC
GGGATGCGAGGCAATTATGATGGGCCGGCGGCACCTCTCGTTCATGAAGG
ACGCGTTTGTCATGGCCGGGCTGACGAGGACGAGCACGTTTGGCCACTAC
ACGGGGCTGCTTCAC
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