mRNA_Ecto-sp13_S_contig14119.3215.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14119.3215.1
Unique NamemRNA_Ecto-sp13_S_contig14119.3215.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14119.3215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14119contigEcto-sp13_S_contig14119:1221..2380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size453
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-11_005370.1
Cds size453
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462754.895944-CDS-Ecto-sp13_S_contig14119:1220..16111681462754.895944-CDS-Ecto-sp13_S_contig14119:1220..1611Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14119 1221..1611 -
1681462754.9049315-CDS-Ecto-sp13_S_contig14119:2318..23801681462754.9049315-CDS-Ecto-sp13_S_contig14119:2318..2380Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14119 2319..2380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14119.3215.1prot_Ecto-sp13_S_contig14119.3215.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14119 1221..2380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14119.3215.1

>prot_Ecto-sp13_S_contig14119.3215.1 ID=prot_Ecto-sp13_S_contig14119.3215.1|Name=mRNA_Ecto-sp13_S_contig14119.3215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=151bp
MMRAMDRVDRAKALKVSEENMAFHNVLIPRRDETADAALKIATNILLSDA
RAISCYDPMECMQRIYCQIGPLCYPDNVEGACCTGPVPYSVDVPVGDAHV
APYEFGPAGDPPGARFFDRFQDDEAWGTYLGDVANILDIHMRASSGPSPE
L
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mRNA from alignment at Ecto-sp13_S_contig14119:1221..2380-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14119.3215.1 ID=mRNA_Ecto-sp13_S_contig14119.3215.1|Name=mRNA_Ecto-sp13_S_contig14119.3215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1160bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14119:1221..2380- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCGTGCCATGGACAGGGTAGACAGGGCAAAGGCGCTCAAGGTGTC
GGAGGAAAATATGTGAGTTTGATAGTAGGAAGGCCTTTGGAAGAATAGAG
CGGGCGTTCTGTGTGGCATCGGATACGGACGGTACGTTATGCCGTTTCCC
AGCCAAGTAGCAGTAGCGAAAGCATTGAAAGGGGTAAGCAAAGACTTCGA
CCTTTTCACAGCCAAGCGAGACACCGTCATGCTTGAAATGTCCTTGGGAA
AAACGGAGCCAGAGAGATTTTCGGCCAAATCCAGGAAGTTCCCTTGTTAT
TTTTTGTCCTTCGAGTGCAAGAGGGGGGTGAATGTACTTCGGACAAACCG
AAAAAATCAAACACGAGGTAAGGTCACGCACACAATCGAAGCGTCAACAG
TAGAACACGTAGCAGCCCTAAGCCGTGCAAAATTATGAAAGGCAGAAAGA
GCATATTCCCGACTATGGAATCAAGAGACCGCTTAACGTGGTTAGCACAG
AGACTGAGGTAACAACGCAACCAACGCATTACTCTGTTTGGGAAGCGAGG
TGTCAACGACTTCCGACTTCATATGGCAGATAAACTACGTTTCGAATGGC
GTTTGGTGAAACTCGTGCAGACTGTACTGGAACGAGTTCTGTGAGAGCTA
CGAAGCAGAGAAGGATTTTCTGGACCGCTGGCTGGAAGAGTATCAACAGG
AGCGTGCACCACACCAAGAGGCCCGCAGCGCACACCCTGATCCGACCAAA
CTGGATGCTGATTTTTTAGGGCCTTTCACAATGTTCTGATACCTCGCCGT
GATGAGACGGCAGATGCCGCACTCAAGATCGCAACCAATATTCTCCTCAG
CGATGCACGCGCCATCTCCTGTTACGACCCAATGGAGTGTATGCAACGCA
TATACTGCCAGATTGGCCCTCTTTGCTACCCTGACAACGTCGAAGGTGCG
TGCTGCACCGGCCCCGTTCCCTACTCTGTGGACGTGCCCGTGGGCGACGC
CCACGTCGCCCCCTACGAATTTGGCCCCGCAGGAGACCCGCCTGGAGCTC
GATTTTTCGATCGTTTCCAAGACGATGAGGCATGGGGGACATACTTGGGC
GATGTCGCGAACATACTTGACATCCACATGAGGGCGTCGAGCGGACCCAG
CCCGGAGCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14119:1221..2380-

>mRNA_Ecto-sp13_S_contig14119.3215.1 ID=mRNA_Ecto-sp13_S_contig14119.3215.1|Name=mRNA_Ecto-sp13_S_contig14119.3215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14119:1221..2380- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCGTGCCATGGACAGGGTAGACAGGGCAAAGGCGCTCAAGGTGTC
GGAGGAAAATATGGCCTTTCACAATGTTCTGATACCTCGCCGTGATGAGA
CGGCAGATGCCGCACTCAAGATCGCAACCAATATTCTCCTCAGCGATGCA
CGCGCCATCTCCTGTTACGACCCAATGGAGTGTATGCAACGCATATACTG
CCAGATTGGCCCTCTTTGCTACCCTGACAACGTCGAAGGTGCGTGCTGCA
CCGGCCCCGTTCCCTACTCTGTGGACGTGCCCGTGGGCGACGCCCACGTC
GCCCCCTACGAATTTGGCCCCGCAGGAGACCCGCCTGGAGCTCGATTTTT
CGATCGTTTCCAAGACGATGAGGCATGGGGGACATACTTGGGCGATGTCG
CGAACATACTTGACATCCACATGAGGGCGTCGAGCGGACCCAGCCCGGAG
CTT
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