mRNA_Ecto-sp13_S_contig14113.3213.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14113.3213.1
Unique NamemRNA_Ecto-sp13_S_contig14113.3213.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14113.3213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14113contigEcto-sp13_S_contig14113:294..1006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size289
Hectar predicted targeting categoryother localisation
Exons2
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462754.809015-CDS-Ecto-sp13_S_contig14113:293..3291681462754.809015-CDS-Ecto-sp13_S_contig14113:293..329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14113 294..329 +
1681462754.8270946-CDS-Ecto-sp13_S_contig14113:754..10061681462754.8270946-CDS-Ecto-sp13_S_contig14113:754..1006Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14113 755..1006 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14113.3213.1prot_Ecto-sp13_S_contig14113.3213.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14113 294..1006 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14113.3213.1

>prot_Ecto-sp13_S_contig14113.3213.1 ID=prot_Ecto-sp13_S_contig14113.3213.1|Name=mRNA_Ecto-sp13_S_contig14113.3213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp
MTLNHEFEKKSTELDALLKKRVASPISAPARVASRTRICPVRGKRGNVLS
PTSTRQDYSDSNTKTTHNPTSTTIIANTTSSAIANAIPTVVDNDTD
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mRNA from alignment at Ecto-sp13_S_contig14113:294..1006+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14113.3213.1 ID=mRNA_Ecto-sp13_S_contig14113.3213.1|Name=mRNA_Ecto-sp13_S_contig14113.3213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=713bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14113:294..1006+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTCTCAACCACGAGTTTGAAAAAAAGAGCACGGCAAGTTCGCTAAC
CCATGCCAGTCTACACGTAGAGTGGAAAGCACGCTGTTCATGCGACGGAC
GAGCCAACACGTTGCGTTAGCGCGCCGAGGAGGACACCGGATTCATTACG
ACCTGCATGGAGTATTTCATAATCCTTGGTAGAAGCCCAAAAGATTCTTG
ACCTCTTGCGTTTGTCAAGTTGGAGCTCCGCCGTTACGAGAAGATATGGG
ACATCGTCATGGGATGTATTGGGGATTGTCCTTCGTATGACGTAGATGGA
GTAAGGTCTTATCAACGTCTGCATGGGCAATCCAGTCTTGAGCAATAATT
ACTAAAAAATGATGATGCCTAGAACCTACTGCTGTGTACGATCTCGTCGG
CAACACTTTCTCCGAGATAGTAGCACTCCTCCTAGACTAAAAAAGTTTTC
ATTTATTGCAGGAACTGGACGCTCTCCTGAAGAAACGAGTCGCCTCGCCC
ATCTCCGCGCCAGCAAGAGTGGCTTCTCGGACAAGAATCTGCCCGGTCCG
AGGAAAACGCGGGAACGTGCTCTCGCCCACCTCAACCCGACAGGATTACA
GCGACAGCAACACAAAAACCACTCACAACCCGACAAGCACCACCATCATC
GCCAACACCACCAGTAGTGCGATCGCCAACGCCATACCCACCGTCGTCGA
CAACGACACCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14113:294..1006+

>mRNA_Ecto-sp13_S_contig14113.3213.1 ID=mRNA_Ecto-sp13_S_contig14113.3213.1|Name=mRNA_Ecto-sp13_S_contig14113.3213.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14113:294..1006+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTCTCAACCACGAGTTTGAAAAAAAGAGCACGGAACTGGACGCTCT
CCTGAAGAAACGAGTCGCCTCGCCCATCTCCGCGCCAGCAAGAGTGGCTT
CTCGGACAAGAATCTGCCCGGTCCGAGGAAAACGCGGGAACGTGCTCTCG
CCCACCTCAACCCGACAGGATTACAGCGACAGCAACACAAAAACCACTCA
CAACCCGACAAGCACCACCATCATCGCCAACACCACCAGTAGTGCGATCG
CCAACGCCATACCCACCGTCGTCGACAACGACACCGAC
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