prot_Ecto-sp13_S_contig1411.3209.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1411.3209.1
Unique Nameprot_Ecto-sp13_S_contig1411.3209.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length428
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1411.3209.1 vs. uniprot
Match: A0A6H5LLU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLU7_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 4.340e-91
Identity = 197/231 (85.28%), Postives = 205/231 (88.74%), Query Frame = 0 
Query:  200 GSATRAASEDRSLSPAPFKSTSANTSSTAVAHKTXXXXSPFASIPTPASPKKKRKVSTWSSPPSSHRVNVRTTGXXXXXXXXXXXXXXXXLLSSXKGR---VXXXXXXXXXXXXXXXXXXXXXXXELPVQAAATAVLRAKEASSTRFVPCATTAADSVSVLPPAAPIDLSCTEDVDIDAAMKPGGEVRTPICRFLIPCWPEGVEGYEEAGGWRRLGGCHTKGNFPVGRRSI 427
            GSATRAAS+ R+LSPAPFKST ANTSSTA+A+KT    SPF S+PTPASPKKKRKVSTWSSPPSSHRVN R+TGXXXXXXXXXXXXXXXX    X      V  XXXXXXXXXXXXXXXXXXXXXEL V+AAATAVLRAKEASS RFVPCATT A SVSV PPAAP+DLSCTEDVDIDAAMK GGEVRTPICRFLIPCWPEGVEGYEEAGGWRRLGGCHTKGNFPVGRRSI
Sbjct:   12 GSATRAASKYRALSPAPFKSTIANTSSTAMAYKTTTMTSPFPSMPTPASPKKKRKVSTWSSPPSSHRVNARSTGXXXXXXXXXXXXXXXXXXXXXXXXXXXVADXXXXXXXXXXXXXXXXXXXXXELAVEAAATAVLRAKEASSARFVPCATTVAGSVSVPPPAAPMDLSCTEDVDIDAAMKHGGEVRTPICRFLIPCWPEGVEGYEEAGGWRRLGGCHTKGNFPVGRRSI 242
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1411.3209.1 vs. uniprot
Match: D7FR04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR04_ECTSI)

HSP 1 Score: 275 bits (703), Expect = 1.220e-85
Identity = 237/354 (66.95%), Postives = 244/354 (68.93%), Query Frame = 0 
Query:   31 MRIRVPD-SSSSGSELSDGGDSPVATTPEAFTDSDNDSSFESEYDEEAAANRGSNSGMLMEAMGSNNNNSSRWPECTADMGSSREGNHRPQQQQQQLEAPRPLRKVRFTLGGRESAKAAAPSCWGKEQRAVIQENALRSLGMLRPAESAALLAXXXXXXXXXXXXXXXXXGSATRAASEDRSLSPAPFKSTSANTSSTAVAHKTXXXXSPFASIPTPASPKKKRKVSTWSSPPSSHRVNVRTTGXXXXXXXXXXXXXXXXLLSSXKGRVXXXXXXXXXXXXXXXXXXXXXXXELPVQAAATAVLRAKEASSTRFVPCATTAADSVSVLPPAA-PIDLSCTEDVDIDAAMKPGGE 382
            MRIRVPD SSSSGSELSDGGDSPVATTPEAFTDSDNDSSF SEY+EEAAA  GSNSGMLMEAM        RWPECTADMGSS EG+HRPQQQQ+QLEAPRPLRKVRFTLGGRESAKAAAPSCWGKEQRAVIQENALRSLGMLRPAESAA LA          XXXXXXX                                  XXXX                      S PSSHRVN     XXXXXXXXXXXXXXXX    X    XXXXXXXXX      XXXXXX  EL V+AAATA LRA  ASS R VPCATTAA+SVSV PPAA P+DLSCTEDVD+DAAMKPGGE
Sbjct:    1 MRIRVPDTSSSSGSELSDGGDSPVATTPEAFTDSDNDSSFGSEYEEEAAATCGSNSGMLMEAM-------CRWPECTADMGSSHEGHHRPQQQQKQLEAPRPLRKVRFTLGGRESAKAAAPSCWGKEQRAVIQENALRSLGMLRPAESAAPLAQQRRRWQRKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPSSHRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNGRVTXXXXXXS-ELTVEAAATAALRANGASSARLVPCATTAANSVSVPPPAATPMDLSCTEDVDMDAAMKPGGE 346
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1411.3209.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LLU7_9PHAE4.340e-9185.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR04_ECTSI1.220e-8566.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..427
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1411contigEcto-sp13_S_contig1411:3033..7371 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1411.3209.1mRNA_Ecto-sp13_S_contig1411.3209.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1411 2735..7371 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1411.3209.1 ID=prot_Ecto-sp13_S_contig1411.3209.1|Name=mRNA_Ecto-sp13_S_contig1411.3209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=428bp
MSSLRSSSSSSSSLCCAVLSTASQDAPLSPMRIRVPDSSSSGSELSDGGD
SPVATTPEAFTDSDNDSSFESEYDEEAAANRGSNSGMLMEAMGSNNNNSS
RWPECTADMGSSREGNHRPQQQQQQLEAPRPLRKVRFTLGGRESAKAAAP
SCWGKEQRAVIQENALRSLGMLRPAESAALLAQQRRRWQRKQQSSSRSSG
SATRAASEDRSLSPAPFKSTSANTSSTAVAHKTTTTTSPFASIPTPASPK
KKRKVSTWSSPPSSHRVNVRTTGTGGGGGGGGDSHRRPTLLSSSKGRVAV
AMAVAAGKNARVTPTTTTTTSELPVQAAATAVLRAKEASSTRFVPCATTA
ADSVSVLPPAAPIDLSCTEDVDIDAAMKPGGEVRTPICRFLIPCWPEGVE
GYEEAGGWRRLGGCHTKGNFPVGRRSI*
back to top