mRNA_Ecto-sp13_S_contig1411.3209.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1411.3209.1
Unique NamemRNA_Ecto-sp13_S_contig1411.3209.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1411.3209.1 vs. uniprot
Match: A0A6H5LLU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLU7_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 8.690e-90
Identity = 197/231 (85.28%), Postives = 205/231 (88.74%), Query Frame = 2 
Query:  896 GSATRAASEDRSLSPAPFKSTSANTSSTAVAHKTXXXXSPFASIPTPASPKKKRKVSTWSSPPSSHRVNVRTTGXXXXXXXXXXXXXXXXLLSSXKGR---VXXXXXXXXXXXXXXXXXXXXXXXELPVQAAATAVLRAKEASSTRFVPCATTAADSVSVLPPAAPIDLSCTEDVDIDAAMKPGGEVRTPICRFLIPCWPEGVEGYEEAGGWRRLGGCHTKGNFPVGRRSI 1579
            GSATRAAS+ R+LSPAPFKST ANTSSTA+A+KT    SPF S+PTPASPKKKRKVSTWSSPPSSHRVN R+TGXXXXXXXXXXXXXXXX    X      V  XXXXXXXXXXXXXXXXXXXXXEL V+AAATAVLRAKEASS RFVPCATT A SVSV PPAAP+DLSCTEDVDIDAAMK GGEVRTPICRFLIPCWPEGVEGYEEAGGWRRLGGCHTKGNFPVGRRSI
Sbjct:   12 GSATRAASKYRALSPAPFKSTIANTSSTAMAYKTTTMTSPFPSMPTPASPKKKRKVSTWSSPPSSHRVNARSTGXXXXXXXXXXXXXXXXXXXXXXXXXXXVADXXXXXXXXXXXXXXXXXXXXXELAVEAAATAVLRAKEASSARFVPCATTVAGSVSVPPPAAPMDLSCTEDVDIDAAMKHGGEVRTPICRFLIPCWPEGVEGYEEAGGWRRLGGCHTKGNFPVGRRSI 242
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BLAST of mRNA_Ecto-sp13_S_contig1411.3209.1 vs. uniprot
Match: D7FR04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR04_ECTSI)

HSP 1 Score: 275 bits (703), Expect = 2.320e-84
Identity = 237/354 (66.95%), Postives = 244/354 (68.93%), Query Frame = 2 
Query:  389 MRIRVPD-SSSSGSELSDGGDSPVATTPEAFTDSDNDSSFESEYDEEAAANRGSNSGMLMEAMGSNNNNSSRWPECTADMGSSREGNHRPQQQQQQLEAPRPLRKVRFTLGGRESAKAAAPSCWGKEQRAVIQENALRSLGMLRPAESAALLAXXXXXXXXXXXXXXXXXGSATRAASEDRSLSPAPFKSTSANTSSTAVAHKTXXXXSPFASIPTPASPKKKRKVSTWSSPPSSHRVNVRTTGXXXXXXXXXXXXXXXXLLSSXKGRVXXXXXXXXXXXXXXXXXXXXXXXELPVQAAATAVLRAKEASSTRFVPCATTAADSVSVLPPAA-PIDLSCTEDVDIDAAMKPGGE 1444
            MRIRVPD SSSSGSELSDGGDSPVATTPEAFTDSDNDSSF SEY+EEAAA  GSNSGMLMEAM        RWPECTADMGSS EG+HRPQQQQ+QLEAPRPLRKVRFTLGGRESAKAAAPSCWGKEQRAVIQENALRSLGMLRPAESAA LA          XXXXXXX                                  XXXX                      S PSSHRVN     XXXXXXXXXXXXXXXX    X    XXXXXXXXX      XXXXXX  EL V+AAATA LRA  ASS R VPCATTAA+SVSV PPAA P+DLSCTEDVD+DAAMKPGGE
Sbjct:    1 MRIRVPDTSSSSGSELSDGGDSPVATTPEAFTDSDNDSSFGSEYEEEAAATCGSNSGMLMEAM-------CRWPECTADMGSSHEGHHRPQQQQKQLEAPRPLRKVRFTLGGRESAKAAAPSCWGKEQRAVIQENALRSLGMLRPAESAAPLAQQRRRWQRKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPSSHRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNGRVTXXXXXXS-ELTVEAAATAALRANGASSARLVPCATTAANSVSVPPPAATPMDLSCTEDVDMDAAMKPGGE 346
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1411.3209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LLU7_9PHAE8.690e-9085.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR04_ECTSI2.320e-8466.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1411contigEcto-sp13_S_contig1411:2735..7371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1582
Hectar predicted targeting categoryother localisation
Exons3
Cds size1284
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462754.6013145-UTR-Ecto-sp13_S_contig1411:2734..30321681462754.6013145-UTR-Ecto-sp13_S_contig1411:2734..3032Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1411 2735..3032 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462754.6098905-CDS-Ecto-sp13_S_contig1411:3032..33101681462754.6098905-CDS-Ecto-sp13_S_contig1411:3032..3310Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1411 3033..3310 +
1681462754.61774-CDS-Ecto-sp13_S_contig1411:3802..41051681462754.61774-CDS-Ecto-sp13_S_contig1411:3802..4105Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1411 3803..4105 +
1681462754.6255634-CDS-Ecto-sp13_S_contig1411:6668..73711681462754.6255634-CDS-Ecto-sp13_S_contig1411:6668..7371Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1411 6669..7371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1411.3209.1prot_Ecto-sp13_S_contig1411.3209.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1411 3033..7371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1411.3209.1

>prot_Ecto-sp13_S_contig1411.3209.1 ID=prot_Ecto-sp13_S_contig1411.3209.1|Name=mRNA_Ecto-sp13_S_contig1411.3209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=428bp
MSSLRSSSSSSSSLCCAVLSTASQDAPLSPMRIRVPDSSSSGSELSDGGD
SPVATTPEAFTDSDNDSSFESEYDEEAAANRGSNSGMLMEAMGSNNNNSS
RWPECTADMGSSREGNHRPQQQQQQLEAPRPLRKVRFTLGGRESAKAAAP
SCWGKEQRAVIQENALRSLGMLRPAESAALLAQQRRRWQRKQQSSSRSSG
SATRAASEDRSLSPAPFKSTSANTSSTAVAHKTTTTTSPFASIPTPASPK
KKRKVSTWSSPPSSHRVNVRTTGTGGGGGGGGDSHRRPTLLSSSKGRVAV
AMAVAAGKNARVTPTTTTTTSELPVQAAATAVLRAKEASSTRFVPCATTA
ADSVSVLPPAAPIDLSCTEDVDIDAAMKPGGEVRTPICRFLIPCWPEGVE
GYEEAGGWRRLGGCHTKGNFPVGRRSI*
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mRNA from alignment at Ecto-sp13_S_contig1411:2735..7371+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1411.3209.1 ID=mRNA_Ecto-sp13_S_contig1411.3209.1|Name=mRNA_Ecto-sp13_S_contig1411.3209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4637bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1411:2735..7371+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCTGCGGACAAGGCGAGAAAAAAATATTCGTGTGTGTTTTTCCTGGGT
GTGCGCGCTTGTCCCCCGCCTCTTCCCTCGCTCTCTCTGTGCGCCAAGAT
CATCTGCTGCCCCCACCTTTTCTCCACATCCGCACCCAGCCGCAGCGCCA
ACTCTCTGAAACTCAGGCGGCGGCAGTTGAAACGCATCATACGACTGCTG
TGCTGTTGTGTGTCGTGGGCACTCTCTCCAATCATCCTCCGCCTTGTCTC
CGCTGGAAAGGACGACAACAGCAACCGAAAGTCAGTTACCCTTAAATCAT
GAGCAGCCTTCGCAGCAGCAGCAGCAGCAGCAGCAGCCTGTGCTGCGCCG
TGCTGTCGACGGCGAGCCAAGACGCCCCCCTCTCCCCGATGAGGATCCGG
GTGCCTGACAGCAGCAGCAGCGGCAGCGAGCTCTCGGACGGCGGCGACTC
GCCGGTGGCGACGACTCCAGAGGCGTTCACCGACAGCGACAACGACTCGT
CCTTCGAGAGCGAATACGACGAGGAAGCGGCGGCCAACCGCGGCAGCAAC
AGCGGGATGCTGATGGAGGCCATGGGGTGAGTTGTAGCTCGCTTGGCAGG
GACAATAGGCGGGCAGAGAGAGGCACCCAGTCAACAGTTTGTCGGTGTTT
TTTCTTGTTCTAGGAAAAGACCAGCGCTTTTCCTCATGTTGTTCGTTATT
GTTGGTGCCCGCTGCGGCTTGCCGTCCGTTTCCGTTTCCTGGTTTTCACG
ACCCCAAGAGCGCGGGACATGGTTCTCGCGCTCAACAAACCGACACATGA
TAAGAGGTGTTGTTGGCGTTGGGTTGTGTTTGAAATTGCCTTGTGTGTTT
CACGCGCGCCAAGGGTGGTTGTAGAGAGGTGCCCCGGTGCTGCGGGAGGT
CTCTCTCTCCTTGGCTGTCGTCGGTGGTTTGTTCTTCCTGAGTCAAGAGA
ACACGTCATGGAAAGAGGCGGGGAACGCATGCCCCTCTTCCTCCGTTTGA
ATTTTTTGCGCGCCTTGGTCCAACCAAACAGCAATATTGTCTCCCACTCG
CGCGTGTGTCCGACACAGCAGCAACAACAACAACAGCAGTAGATGGCCCG
AGTGCACCGCCGACATGGGCAGCAGCCGCGAGGGGAACCACCGGCCACAA
CAACAACAGCAGCAGCTCGAGGCACCCAGACCGCTCAGGAAGGTGCGTTT
CACCTTGGGCGGGAGGGAGTCAGCAAAGGCGGCAGCACCGAGCTGCTGGG
GAAAGGAGCAGCGCGCTGTCATCCAGGAGAACGCTCTCCGGAGTCTAGGA
ATGCTGCGCCCAGCAGAGAGCGCAGCGCTGTTGGCACAGCAGCGGCGGCG
GTGGCAGCGAAAACAACAATCGTGAGTCTTGGTTGATCACCGCACACCCA
GACCAATCTGTTCGCAAAAACCACACGACAGCCGCAGCCATATTTTTTTT
TCAGAGCTCTTTTTTGCAAAAATGCCGTCGGCTTTGCCAAGCGCGCTGAC
CATCCTCCTCTCCTGCGATTACCTGCGGTTGCCTCTTCTCTGATGCGTGT
ACCGCTGCTGTATATTAGACTTTGTGTTGGCTGCGAGTGTGGGTGCTGCT
GGCGCATTTAATTTGTTCACGGTTTGTTAACGGTCAACTTTCAAAATTCA
AAAATTTGGGCGATGGCGCGCTCATGACAAGGACGAAGGGATTTCGGTCA
CCGAAATTGTTTCTTTTTTTTTTTCACAGATGTACCCACTGACACTCCGG
ATCACGCGAGATCCTAAATCCATCACCCACTCTATCCATGTGGTATCCAT
TCAACAGCTTCTTTTTTTTCTCCCCACGTAGGCGTTGGAATGCATGGATG
ATGCCTACTGCAAACATGCACGTGCATTCTTTAATATTATTGGGCTTTGT
GGCGTGCAGCGGTTGAATGCTTCGCGTGCGAGACGTTGTTATCACTTGGG
TTGCAGGTTTCATTGTTTTGTAGCGGTTGCATCAGCCGCTGTTCTTGTTG
ATGTAATGATGTATCCAACGACAACGTTCCCGTTGCAAGAAAAAAAAGTG
TGAAGTGTCTCTATACAACGGACAGATGAAGGTAGTATATAGGGTAGAGA
TCGGAACGGTTTTGGTTGCAGACAGCAAACAACCAACAACCACAAGACAG
CAGTGTGGGAGTCAGCCTTTTTGTGTTGCATGCATCCTCCTGTTGTACAT
GCACAGCAACCATTTGTGTGGGTGCAGGTGATTGCTGTTGTTTCGCCGGC
GCGAGTCGTTCCCCGAAGCAAGCAGTATCGCTGTGACAAGAGTTTACCAC
CAGTAGTAGCATTGTCCCTTGCTTGTATCCGTACACGTGTGTACCAGCGC
TCCTGTTCTTGCATGCTTTGTACAATGCATGGGATAGGGTGTCCGTTGTC
CAATGTAGTGCACTGCTAGCAACTTTTGCTTGGCAGTTCAAGCAGTTTTC
GTGTTTTGTCTTGTTCCAAAATTGTTTGTTTTTGTTCCTCGAGGCTTCTT
CCGGTTGCCTTTGTTGGGTTGAGAACGACATGTTTTGAAGATACACATAC
AAGTAGGACGTACCAACATTTGTGTATGTCGGGTGCGGCCACATTTATTT
GGGTACCTTGTTGGGGCGAAGAAGCCGGGGCCACACAGGGGGAACGAAGC
GTGACGGCAAGTACATGTAGGTCAAGTCATTTTAGAAGATATACGATCAA
AGAGAGACCTACCTTTCGTACAGTGCAATGCCCTTTCGAGATAATGCCAC
AGCAGTGGCGTTGTGTTGAAGTCTTCGTAGTGAGTGGGAAGAAAACAACT
TTTCCCGTCACGCGGAACACGAAGATGGAAAAAAAGTCCCGAAAGTACAA
CACGGACATATCCTTTCACACTTGATGGTATAGACACGATGGCCTATATC
TATATTTCCCATGTCTACGTTGTTCACTTTTTCCAGACTTTTTCCTGAAA
CGGATGGTATAATAGCAGGAATAGAATAGTTTTTAGGAAAATATATACTC
CCGAGTATAAAACAATGAATCAATCATGGTCGGTGCACCCGTCGTTTTTG
GCGTGCGTACTTTCGTGGTGTTCAAATGTCAAAATTCATGGCGAGCAGCT
GTTACAGCAGTAGATAGAGAACACGAGCTGGCGTATTGCGCCCTTTTGTG
TGATCACGCCCCGAACGAAGCTTCAAATGTTGAGTTTTTACCGTTCAAGG
CTTGGTCGTACGCGAAATCACTTGGCAGAGGAACAACGAAACACATCGCG
TCCCATGTCTAGGCCTGTCTCAAGGCGTAGGTTGCTTCCGATGGTGTGGG
CTTGAAAAGATGGAACCCCTCTCATCTGTGAAGATTTCAACGTGTGCCAT
GGTGAAATGTTGCCGCCGTTTTTGGCAGCCATCAAGACACGTCACTTTCG
TTCTTCGTCTTGTCACCTGTCCTATTTGGCAGACCACGAAATAAAACAGC
AAGAAAATGAGACAGAAAAATCCCGTGTAGCACACAACCAACAACCAACA
ACCAACCCTCGCTGGGTGCCATGTCGTACATACTAGCTCTTCCTATCGCT
GCCGACTTCTAGTTGGAAATGCAGCAGTTGGGTACAACCGTTTTTTCACA
GGGTGAAAGGCAGTCCTGCTCCGCTTACTCAACCGGACACTTTTTTTATT
GCGGTATACATTTACTCGGGAGTTGGGCTTTGGTTGTGGTCTGGCCACTG
CTCTAACGGTGAGTGCCTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCACCCCCCCAACCACCCACCCAACACGCGCCCCGACCCACCGCGCGC
CGCCCGCCGGCCCCGCCCCCCGGGCCNNNNNNNNTTTTCTCGGGGGTTGG
GCTTTGGTTGTGGTCTGGCCACTGCTCTAACGGTGAGTGCCCCCCCCCCC
CCCCCCCCTCCCCCCCAATGATGCCCTGCACAAGCAGCAGCAGAAGCAGC
GGCAGCGCCACCAGGGCGGCGTCCGAAGACCGCTCCTTGTCGCCGGCGCC
GTTCAAGAGCACCAGCGCCAACACCAGCAGCACAGCGGTAGCGCATAAGA
CGACGACGACGACGTCGCCCTTCGCGTCGATACCGACGCCGGCTTCCCCG
AAGAAGAAGCGCAAGGTGTCGACATGGTCATCACCGCCGTCGAGTCACCG
CGTAAACGTGCGGACCACCGGGACCGGCGGCGGCGGCGGCGGCGGCGGCG
ACTCACACCGCCGGCCGACGCTATTGTCGTCTTCGAAAGGGAGGGTGGCC
GTCGCGATGGCGGTGGCGGCGGGGAAAAATGCAAGGGTAACCCCTACCAC
CACCACCACCACCTCAGAACTGCCCGTACAGGCGGCGGCGACGGCGGTGT
TGCGTGCGAAGGAGGCGTCGTCGACCCGCTTCGTCCCCTGCGCAACAACA
GCGGCGGACTCGGTGAGCGTACTTCCGCCTGCAGCCCCGATAGACTTGTC
GTGCACGGAGGACGTGGACATCGACGCCGCGATGAAGCCCGGGGGGGAGG
TGAGGACCCCGATATGCCGGTTCCTCATCCCGTGCTGGCCGGAAGGGGTG
GAAGGCTACGAGGAGGCCGGGGGCTGGAGGAGGCTTGGGGGCTGCCACAC
CAAGGGCAACTTCCCGGTGGGGAGGAGGTCGATCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1411:2735..7371+

>mRNA_Ecto-sp13_S_contig1411.3209.1 ID=mRNA_Ecto-sp13_S_contig1411.3209.1|Name=mRNA_Ecto-sp13_S_contig1411.3209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1284bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1411:2735..7371+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCAGCCTTCGCAGCAGCAGCAGCAGCAGCAGCAGCCTGTGCTGCGC
CGTGCTGTCGACGGCGAGCCAAGACGCCCCCCTCTCCCCGATGAGGATCC
GGGTGCCTGACAGCAGCAGCAGCGGCAGCGAGCTCTCGGACGGCGGCGAC
TCGCCGGTGGCGACGACTCCAGAGGCGTTCACCGACAGCGACAACGACTC
GTCCTTCGAGAGCGAATACGACGAGGAAGCGGCGGCCAACCGCGGCAGCA
ACAGCGGGATGCTGATGGAGGCCATGGGCAGCAACAACAACAACAGCAGT
AGATGGCCCGAGTGCACCGCCGACATGGGCAGCAGCCGCGAGGGGAACCA
CCGGCCACAACAACAACAGCAGCAGCTCGAGGCACCCAGACCGCTCAGGA
AGGTGCGTTTCACCTTGGGCGGGAGGGAGTCAGCAAAGGCGGCAGCACCG
AGCTGCTGGGGAAAGGAGCAGCGCGCTGTCATCCAGGAGAACGCTCTCCG
GAGTCTAGGAATGCTGCGCCCAGCAGAGAGCGCAGCGCTGTTGGCACAGC
AGCGGCGGCGGTGGCAGCGAAAACAACAATCCAGCAGCAGAAGCAGCGGC
AGCGCCACCAGGGCGGCGTCCGAAGACCGCTCCTTGTCGCCGGCGCCGTT
CAAGAGCACCAGCGCCAACACCAGCAGCACAGCGGTAGCGCATAAGACGA
CGACGACGACGTCGCCCTTCGCGTCGATACCGACGCCGGCTTCCCCGAAG
AAGAAGCGCAAGGTGTCGACATGGTCATCACCGCCGTCGAGTCACCGCGT
AAACGTGCGGACCACCGGGACCGGCGGCGGCGGCGGCGGCGGCGGCGACT
CACACCGCCGGCCGACGCTATTGTCGTCTTCGAAAGGGAGGGTGGCCGTC
GCGATGGCGGTGGCGGCGGGGAAAAATGCAAGGGTAACCCCTACCACCAC
CACCACCACCTCAGAACTGCCCGTACAGGCGGCGGCGACGGCGGTGTTGC
GTGCGAAGGAGGCGTCGTCGACCCGCTTCGTCCCCTGCGCAACAACAGCG
GCGGACTCGGTGAGCGTACTTCCGCCTGCAGCCCCGATAGACTTGTCGTG
CACGGAGGACGTGGACATCGACGCCGCGATGAAGCCCGGGGGGGAGGTGA
GGACCCCGATATGCCGGTTCCTCATCCCGTGCTGGCCGGAAGGGGTGGAA
GGCTACGAGGAGGCCGGGGGCTGGAGGAGGCTTGGGGGCTGCCACACCAA
GGGCAACTTCCCGGTGGGGAGGAGGTCGATCTGA
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