mRNA_Ecto-sp13_S_contig14108.3208.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig14108.3208.1
Unique Name	mRNA_Ecto-sp13_S_contig14108.3208.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig14108.3208.1 vs. uniprot
Match: A0A6H5KP96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP96_9PHAE)

HSP 1 Score: 509 bits (1310), Expect = 7.040e-169
Identity = 272/278 (97.84%), Postives = 272/278 (97.84%), Query Frame = 1

Query:    1 LTADKPTGGXXXXXXXXXXXXXXXXXGVKWAVTELLDVSDFDALVPRPAHRFPFTLDGFQKQAVARLERAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFGDVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLEHHLLAGNELHPIMDNLGKFESNGYNAAAAMLMSKEDKKAAAGRGG 834
            L ADKPTG   XXXXXXXXXXXXXX GVKWAVTELLDVSDFDALVPRPAHRFPFTLDGFQKQAVARLERAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFGDVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLEHHLLAGNELHPIMDN GKFESNGYNAAAAMLMSKEDKKAAAGRGG
Sbjct:  386 LAADKPTG---XXXXXXXXXXXXXXGGVKWAVTELLDVSDFDALVPRPAHRFPFTLDGFQKQAVARLERAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFGDVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLEHHLLAGNELHPIMDNFGKFESNGYNAAAAMLMSKEDKKAAAGRGG 660

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BLAST of mRNA_Ecto-sp13_S_contig14108.3208.1 vs. uniprot
Match: D7FJL2_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJL2_ECTSI)

HSP 1 Score: 507 bits (1306), Expect = 3.850e-165
Identity = 273/278 (98.20%), Postives = 274/278 (98.56%), Query Frame = 1

Query:    1 LTADKPTGGXXXXXXXXXXXXXXXXXGVKWAVTELLDVSDFDALVPRPAHRFPFTLDGFQKQAVARLERAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFGDVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLEHHLLAGNELHPIMDNLGKFESNGYNAAAAMLMSKEDKKAAAGRGG 834
            L ADKPTG XXXXXXXXXXXXXXXXX VKWAVTELLDVSDFDALVPRPAHRFPFTLDGFQKQAVARLERAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFGDVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLEH+LLAGNELHPIMDN GKFESNGYNAAAAMLMSKEDKKAAAGRGG
Sbjct:  538 LAADKPTGXXXXXXXXXXXXXXXXXXXVKWAVTELLDVSDFDALVPRPAHRFPFTLDGFQKQAVARLERAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFGDVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLEHNLLAGNELHPIMDNFGKFESNGYNAAAAMLMSKEDKKAAAGRGG 815

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BLAST of mRNA_Ecto-sp13_S_contig14108.3208.1 vs. uniprot
Match: A0A835YZN6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZN6_9STRA)

HSP 1 Score: 375 bits (962), Expect = 3.760e-129
Identity = 183/217 (84.33%), Postives = 197/217 (90.78%), Query Frame = 1

Query:   88 WAVTELLDVSDFDALVPRPAHRFPFTLDGFQKQAVARLERAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFGD-VGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLEHHLLAGNELHPI 735
            WAVT  LDVSDF +LVP PA  +PF LD FQKQAVARLER ECVFV+AHTSAGKTVVAEYAIA+A  HMTRAIYTSPIKALSNQKYRDFK RFGD VGLITGDVSINPEASCLIMTTEILRSMLYRGAD++RDIEWVIFDEVHY+ND+ERGVVWEEVIIMLPEHA MIFLSATTPNT+EF DWIGRTK+KPVHVITT YRPVPL+H + AG E+H +
Sbjct:   16 WAVTASLDVSDFRSLVPNPAIEYPFELDAFQKQAVARLERRECVFVAAHTSAGKTVVAEYAIALAAAHMTRAIYTSPIKALSNQKYRDFKKRFGDDVGLITGDVSINPEASCLIMTTEILRSMLYRGADIVRDIEWVIFDEVHYINDTERGVVWEEVIIMLPEHAGMIFLSATTPNTIEFSDWIGRTKKKPVHVITTDYRPVPLQHFIYAGGEMHKV 232

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BLAST of mRNA_Ecto-sp13_S_contig14108.3208.1 vs. uniprot
Match: A0A7S1XU58_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU58_9STRA)

HSP 1 Score: 353 bits (905), Expect = 6.250e-120
Identity = 171/244 (70.08%), Postives = 203/244 (83.20%), Query Frame = 1

Query:   88 WAVTELLDVSDFDALVPRPAHRFPFTLDGFQKQAVARLERAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFG--DVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLEHHLLAGNELHPIMDNLGKFESNGYNAAAAMLMSKEDKK 813
            WAVT LLDVSDF+ LVPRPA  +PF LDGFQKQAV RLE+ E VFV+AHTSAGKTVVAEYA+A+A ++ TR +YTSPIKALSNQK+RDFK RFG  +VG++TGDVS+NPEA C+IMTTEILRSMLYRGADL+RD+EWV+FDEVHYVNDSERGVVWEEVIIMLP +  M+FLSATTPNT EFC+WIGRTKR+PVHV+ T++RPVPL HHL    +   ++D   +F   G   AAA +  KE ++
Sbjct:   14 WAVTALLDVSDFERLVPRPAAEWPFELDGFQKQAVCRLEQKEDVFVAAHTSAGKTVVAEYAVALALRNGTRCVYTSPIKALSNQKFRDFKERFGAENVGIVTGDVSVNPEAPCVIMTTEILRSMLYRGADLVRDLEWVVFDEVHYVNDSERGVVWEEVIIMLPSYVGMVFLSATTPNTTEFCEWIGRTKRRPVHVVATSHRPVPLVHHLTLKGKDFVVLDAERRFIQAGAEQAAAKIREKEQRR 257

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BLAST of mRNA_Ecto-sp13_S_contig14108.3208.1 vs. uniprot
Match: A0A1V9ZLM2_9STRA (DEAD/DEAH box RNA helicase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZLM2_9STRA)

HSP 1 Score: 367 bits (943), Expect = 1.210e-114
Identity = 183/253 (72.33%), Postives = 211/253 (83.40%), Query Frame = 1

Query:   82 VKWAVTELLDVSDFDALVPRPAHRFPFTLDGFQKQAVARLERAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFG--DVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLEHHLLAGNELHPIMDNLGKFESNGYNAAAAMLMSKEDKKAAAGRGG 834
            ++WA  E +DVS+F A VP  A +FPF LD FQKQAV  LE  +CVF++AHTSAGKTVVAEYAIAM+Q+HMTR IYTSPIKALSNQKYRDF+T+FG  +VGLITGDVSINP+ASCL+MTTEILRSMLYRGAD+IRDIEWVIFDE+HY+NDSERGVVWEEVIIMLPEH +M+FLSATTPNT EF DWIGRTK+K +HVI+T  RP+PL HHL AG E+ P+MD  G+F S  Y+AA   L  K D K   GRGG
Sbjct:  370 LEWASAEPVDVSNFHAKVPDMAMQFPFELDSFQKQAVVHLENHDCVFIAAHTSAGKTVVAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRTKFGVDNVGLITGDVSINPQASCLVMTTEILRSMLYRGADVIRDIEWVIFDEIHYLNDSERGVVWEEVIIMLPEHVSMVFLSATTPNTFEFSDWIGRTKQKKIHVISTHKRPIPLSHHLYAGGEVLPVMDPQGQFLSANYSAAVQRLKPK-DSKTGPGRGG 621

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BLAST of mRNA_Ecto-sp13_S_contig14108.3208.1 vs. uniprot
Match: A0A6G0WTP8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTP8_9STRA)

HSP 1 Score: 363 bits (932), Expect = 3.770e-113
Identity = 181/253 (71.54%), Postives = 209/253 (82.61%), Query Frame = 1

Query:   82 VKWAVTELLDVSDFDALVPRPAHRFPFTLDGFQKQAVARLERAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFG--DVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLEHHLLAGNELHPIMDNLGKFESNGYNAAAAMLMSKEDKKAAAGRGG 834
            ++WA    +DVSDF   +P  A +FPF LD FQKQA+  LE  ECVF++AHTSAGKTVVAEYAIAM+Q+HMTR +YTSPIKALSNQKYRDF+T+FG  +VGLITGDVSINPEASCL+MTTEILRSMLYRGAD+IRDIEWVIFDE+HY+NDSERGVVWEEVIIMLPEH +M+FLSATTPNT EF DWIGRTK+K +HVI+TT RPVPL HHL AG E+ PI+DN  +F +N +  A      KE K AA  RGG
Sbjct:  361 LEWASKAEVDVSDFHTKIPDMALKFPFELDSFQKQAIVHLENHECVFIAAHTSAGKTVVAEYAIAMSQKHMTRTVYTSPIKALSNQKYRDFRTKFGVDNVGLITGDVSINPEASCLVMTTEILRSMLYRGADVIRDIEWVIFDEIHYLNDSERGVVWEEVIIMLPEHVSMVFLSATTPNTFEFSDWIGRTKQKKIHVISTTKRPVPLGHHLYAGGEIIPIVDNSNQFLTNNHAKANQKCKPKETKTAAT-RGG 612

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BLAST of mRNA_Ecto-sp13_S_contig14108.3208.1 vs. uniprot
Match: K0TLR1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TLR1_THAOC)

HSP 1 Score: 363 bits (932), Expect = 1.390e-112
Identity = 180/248 (72.58%), Postives = 207/248 (83.47%), Query Frame = 1

Query:   88 WAVTE---LLDVSDFDALVPRPAHRFPFTLDGFQKQAVARLERAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFGD-VGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLEHHLLAGNELHPIMDNLGKFESNGYNAAAAMLMSKEDKKAA 819
            WAVT+   L   +DF  ++P PA  FPF LD FQKQAV RLER+ECVF++AHTSAGKTV AEYAIA+A +H TRAIYTSPIKALSNQKYRDFK++FGD VGLITGD+ I  + SCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHY+NDSERGVVWEEVIIMLPE+ N+IFLSATTPNT+EF +WIGRTKRKPVHVI T YRPVPL H+L AG +LH I++  G F++ GY AAA  L+    ++AA
Sbjct:  383 WAVTDYIPLTSTNDFHTMLPNPALTFPFELDDFQKQAVLRLERSECVFLAAHTSAGKTVSAEYAIALAMKHCTRAIYTSPIKALSNQKYRDFKSKFGDDVGLITGDMQIGADGSCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYINDSERGVVWEEVIIMLPEYVNLIFLSATTPNTIEFSEWIGRTKRKPVHVIRTNYRPVPLSHNLWAGGKLHKILEGKGAFDTKGYTAAAHALLPASAREAA 630

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BLAST of mRNA_Ecto-sp13_S_contig14108.3208.1 vs. uniprot
Match: A0A7S4JTK5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JTK5_9STRA)

HSP 1 Score: 355 bits (910), Expect = 1.340e-111
Identity = 179/252 (71.03%), Postives = 202/252 (80.16%), Query Frame = 1

Query:   88 WAVTELLDVSDFDALVPRPAHRFPFTLDGFQKQAVARLERAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFGD-VGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLEHHLLAGNELHPIMDNLGKFESNGYNAAAAMLM--SKEDKKAAAGRGG 834
            W  T    +  F  L P PA  +PF LD FQKQAVARLER ECVFV+AHTSAGKTV AEYAIA+A++H TRAIYTSPIKALSNQKYRDF+ +FGD VGLITGD+ I  ++SCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHY+NDSERGVVWEEVIIMLP++ N+IFLSATTPNT+EF DWIGRTKRKPVHVI T YRPVPL HHL AG +LH +M+    F   GY  A   L+  S +D+ AA G+ G
Sbjct:    3 WPATPPPPIRAFPPLAPDPAISYPFELDDFQKQAVARLERGECVFVAAHTSAGKTVCAEYAIALARKHCTRAIYTSPIKALSNQKYRDFRDKFGDDVGLITGDLQIGADSSCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYINDSERGVVWEEVIIMLPDYVNLIFLSATTPNTIEFSDWIGRTKRKPVHVIRTDYRPVPLSHHLYAGQKLHKVMEGKSGFLEKGYKDATMALLPQSLKDQTAAGGKKG 254

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BLAST of mRNA_Ecto-sp13_S_contig14108.3208.1 vs. uniprot
Match: B8BS27_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BS27_THAPS)

HSP 1 Score: 352 bits (903), Expect = 1.540e-111
Identity = 174/240 (72.50%), Postives = 198/240 (82.50%), Query Frame = 1

Query:  118 DFDALVPRPAHRFPFTLDGFQKQAVARLERAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFGD-VGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLEHHLLAGNELHPIMDNLGKFESNGYNAAAAMLMSKEDKKAAAGRGG 834
            DF  L+P PA  FPF LD FQKQA+ RLER+ECVF++AHTSAGKTV AEYAIA+A +H TRAIYTSPIKALSNQKYRDF+ +FGD VGLITGD+ I  + SCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHY+NDSERGVVWEEVIIMLP++ N+IFLSATTPNT+EF +WIGRTKRKPVHVI T YRPVPL H+L AG +LH +M+    F   GY+ AA  LM    + AA  +GG
Sbjct:    1 DFHTLLPNPALTFPFELDDFQKQAILRLERSECVFLAAHTSAGKTVCAEYAIALAMKHCTRAIYTSPIKALSNQKYRDFRNKFGDDVGLITGDMQIGADGSCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYINDSERGVVWEEVIIMLPDYVNLIFLSATTPNTIEFSEWIGRTKRKPVHVIRTNYRPVPLSHNLWAGMKLHKLMEGREGFNPKGYSEAAKALMPASARAAADAKGG 240

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BLAST of mRNA_Ecto-sp13_S_contig14108.3208.1 vs. uniprot
Match: A0A7S2KL30_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KL30_9STRA)

HSP 1 Score: 360 bits (924), Expect = 2.710e-111
Identity = 175/240 (72.92%), Postives = 204/240 (85.00%), Query Frame = 1

Query:   88 WAVTE---LLDVSDFDALVPRPAHRFPFTLDGFQKQAVARLERAECVFVSAHTSAGKTVVAEYAIAMAQQHMTRAIYTSPIKALSNQKYRDFKTRFG-DVGLITGDVSINPEASCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSATTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLEHHLLAGNELHPIMDNLGKFESNGYNAAAAMLM 795
            WAVT+   L + +DF  L P PA  FPF LD FQKQA+ RLE+ +CVF++AHTSAGKTV AEYA+A+A++H TRAIYTSPIKALSNQKYRDF+++FG DVGLITGD+ I  + SCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHY+NDSERGVVWEEVIIMLPE+ NMIFLSATTPNT+EF +WIGRTKRKPVHVI T YRPVPL HHL AG+++H IM+    F+S GY+AA+  L+
Sbjct:  421 WAVTDYIPLTEEADFHTLCPNPALTFPFELDDFQKQAILRLEKRQCVFLAAHTSAGKTVCAEYAVALAKRHCTRAIYTSPIKALSNQKYRDFRSKFGEDVGLITGDMQIGADGSCLIMTTEILRSMLYRGADLIRDIEWVIFDEVHYINDSERGVVWEEVIIMLPEYVNMIFLSATTPNTIEFSEWIGRTKRKPVHVIRTNYRPVPLSHHLWAGHKMHKIMEGKQGFDSKGYSAASKALL 660

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig14108.3208.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig14108.3208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KP96_9PHAE	7.040e-169	97.84	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FJL2_ECTSI	3.850e-165	98.20	DEAD box helicase n=1 Tax=Ectocarpus siliculosus T...	[more]
A0A835YZN6_9STRA	3.760e-129	84.33	P-loop containing nucleoside triphosphate hydrolas...	[more]
A0A7S1XU58_9STRA	6.250e-120	70.08	Hypothetical protein (Fragment) n=1 Tax=Phaeomonas...	[more]
A0A1V9ZLM2_9STRA	1.210e-114	72.33	DEAD/DEAH box RNA helicase n=1 Tax=Achlya hypogyna...	[more]
A0A6G0WTP8_9STRA	3.770e-113	71.54	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]
K0TLR1_THAOC	1.390e-112	72.58	Uncharacterized protein n=1 Tax=Thalassiosira ocea...	[more]
A0A7S4JTK5_9STRA	1.340e-111	71.03	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
B8BS27_THAPS	1.540e-111	72.50	Uncharacterized protein (Fragment) n=1 Tax=Thalass...	[more]
A0A7S2KL30_9STRA	2.710e-111	72.92	Hypothetical protein n=1 Tax=Skeletonema marinoi T...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig14108	contig	Ecto-sp13_S_contig14108:687..3931 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	508.1
Seed ortholog evalue	2.7e-141
Seed eggNOG ortholog	2880.D7FJL2
Preferred name	SKIV2L
Model size	835
KEGG ko	ko:K12599
KEGG Pathway	ko03018,map03018
KEGG Module	M00392
Hectar predicted targeting category	other localisation
GOs	GO:0000184,GO:0000288,GO:0000291,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0015672,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019439,GO:0023052,GO:0030001,GO:0030968,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034427,GO:0034620,GO:0034641,GO:0034655,GO:0034976,GO:0035864,GO:0035966,GO:0035967,GO:0040029,GO:0042221,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055087,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0070478,GO:0070481,GO:0070887,GO:0071310,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575
Exons	6
EggNOG free text desc.	nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay
EggNOG OGs	COG4581@1,KOG0947@2759
Cds size	834
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko03019

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig14108.3208.1	prot_Ecto-sp13_S_contig14108.3208.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig14108 687..3930 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462754.5113854-CDS-Ecto-sp13_S_contig14108:686..890	1681462754.5113854-CDS-Ecto-sp13_S_contig14108:686..890	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig14108 687..890 +
1681462754.5214093-CDS-Ecto-sp13_S_contig14108:1573..1726	1681462754.5214093-CDS-Ecto-sp13_S_contig14108:1573..1726	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig14108 1574..1726 +
1681462754.5292127-CDS-Ecto-sp13_S_contig14108:2224..2374	1681462754.5292127-CDS-Ecto-sp13_S_contig14108:2224..2374	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig14108 2225..2374 +
1681462754.5370166-CDS-Ecto-sp13_S_contig14108:2798..2948	1681462754.5370166-CDS-Ecto-sp13_S_contig14108:2798..2948	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig14108 2799..2948 +
1681462754.5451145-CDS-Ecto-sp13_S_contig14108:3223..3298	1681462754.5451145-CDS-Ecto-sp13_S_contig14108:3223..3298	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig14108 3224..3298 +
1681462754.5531335-CDS-Ecto-sp13_S_contig14108:3828..3930	1681462754.5531335-CDS-Ecto-sp13_S_contig14108:3828..3930	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig14108 3829..3930 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig14108:687..3931+
coding sequence from alignment at Ecto-sp13_S_contig14108:687..3931+

protein sequence of mRNA_Ecto-sp13_S_contig14108.3208.1

>prot_Ecto-sp13_S_contig14108.3208.1 ID=prot_Ecto-sp13_S_contig14108.3208.1|Name=mRNA_Ecto-sp13_S_contig14108.3208.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=278bp
LTADKPTGGGGGSAAKNGGGRGRGGGGVKWAVTELLDVSDFDALVPRPAH
RFPFTLDGFQKQAVARLERAECVFVSAHTSAGKTVVAEYAIAMAQQHMTR
AIYTSPIKALSNQKYRDFKTRFGDVGLITGDVSINPEASCLIMTTEILRS
MLYRGADLIRDIEWVIFDEVHYVNDSERGVVWEEVIIMLPEHANMIFLSA
TTPNTVEFCDWIGRTKRKPVHVITTTYRPVPLEHHLLAGNELHPIMDNLG
KFESNGYNAAAAMLMSKEDKKAAAGRGG

mRNA from alignment at Ecto-sp13_S_contig14108:687..3931+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig14108.3208.1 ID=mRNA_Ecto-sp13_S_contig14108.3208.1|Name=mRNA_Ecto-sp13_S_contig14108.3208.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3245bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14108:687..3931+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCACCGCCGACAAGCCCACGGGGGGCGGCGGGGGCTCGGCTGCGAAGAA
CGGCGGCGGCCGCGGCCGCGGCGGCGGTGGTGTCAAGTGGGCTGTCACCG
AGCTGCTGGACGTGTCGGACTTCGACGCGCTGGTGCCTCGCCCGGCACAC
CGGTTCCCTTTCACCCTGGACGGTTTCCAGAAGCAGGCTGTGGCTAGGTT
AGAGGTGAGAGCTCGCGTGCGTATGTATGTGTGTCAAGGCGGTGTGTGGT
ATGCGGTTTGTGTTTTGGGTCTGGCACGTTCTTGATTTTGTGGGGACGAG
AAATAAGCCGGAGGGATCGTAGGCATGCCTCTCTTCACCGGGTGTCGGTT
GCGTGGGGCGATGATCGTATGACTGTTTGTTTTTTTGAGTGGATGAAAAG
GTGCGCGGTGGCGGGTGGAACGGATTGCTCACGTGAGTGCTCGTTTCGGC
GTGTAGTTGCTCACTTCGGCTTGGCACCGAGTTTGTAGGATCCGTTGATT
GGTTGAGCTTTGCGCTCGTTTGTGAAGGTGGGATGCTATTATATTGGCCG
TACATACTTCCCGCGCCTTTCCTTCTGGGTACGGATGCTGTATCGCCAAA
ATCTCGCCGAAGTTCGGAGACGATTGTGTGCAGGTGCTCCCCTCCCCCCC
CCGCGTGTCTTGTCACGTCACCTGTTGCCTTTTCGCTGATGGATGCCGTC
ATCCAGACACTGCTTTTTCCATATTGCATCCGCTAGCGAATGACCCCTTG
ATGAGGCCGTATCAATTCCTTTCTTTCGCACCCACGGCCGTGTAATATTC
CTTCACTGAGTGTTCGTCGACTAAGCTAAGTGCTGTTGTTTGTTTCCGGC
CGTGCCGATTACATCCTATCATCGTTGTCCTCACCAGCGAGCGGAGTGCG
TGTTCGTGTCCGCCCACACCTCGGCGGGCAAGACGGTCGTGGCGGAGTAC
GCCATTGCCATGGCGCAGCAGCACATGACCCGAGCCATCTACACCAGCCC
AATCAAGGCCCTCTCCAACCAGAAGTACAGAGACTTCAAGGTTGGTGGCT
GTTTTTGTTTGAGGCTCGGGTGTAGGGAGGGGGAAGGGTGACCGACCGAC
GTCCTCGCTCACGAACTAACCAACGAAGACTTGACACTCACCGTGCCTTG
TTCGTTCTCGGTGCCCATGTGCCGTGGTGCAACTAAGCGGGAAACAATGG
ACGCGGTGTTTTTCCGTGCAGCGTTTGGTTTTTGTGCACGGGGAGCTTGT
AGTTTTGCGGGTGTAGGGATGGTTGAACGAGACGTGATCAATTTGTCCAT
CGGTGTTCGTGTGAGGTACCAAACGGGCTGCTATTCGGTGGGACCGTTTT
GGTACGGTAGAGTCGTACCGTGTTTTCGTCCTGTTTAAGTTGTTTCTTAA
CCAGCTTCCTCTCAGGCATGTTAGCCCCGGTTCGAAGTTTTGTTCGCTTC
TCGCAAAACCTACTTCCCTTTTGCCTGAGAATATCTCTTATCGTATTGTC
TTTGTTGTGTGTTTATTGCCTTGGACTGGACTGTCAAGACTCGGTTCGGA
GACGTGGGTCTCATCACGGGAGACGTGTCGATCAACCCAGAGGCTTCCTG
CCTCATCATGACGACCGAGATTCTTCGGTCGATGCTCTACAGGGGGGCCG
ACCTCATTCGGGATATCGAGTGGGTTATTTTCGACGAGGTACAGTAGTAC
GCGCTGGCTGGCTGGCTGTTGGTAAACACTCTGCACCACAGCCTGGGGTT
GTAGGAACGGGGCGCATGTCGTGTGTTTGTTAAGTTGACTCGTTCCGCCA
CCAACGGCCGGTAGGCTGTGTGCGACCGTAGCATCTTGTGTGCGTACACA
CACACAGTTGTTGTTCTGTACCTTGTTACCTCCCTGTTTGGCGGTTCTGG
TCTGGTGTACTGGATGGCGAGATTGGGAGCTGCCTTCTCCACGATAGTTC
TGCTGTGTGTGGAGGAGGTTGTTGCAATCTTCGGAGGAATCGTGTTCGCC
CAAATGGTGGTATCCATTGTCGCTGGTCATACGGCCGCGTCGCGTACCAC
CTCACACTTGCGCAGCTGCTGCTGTGCTGTGTTATCAATGATGTCGTGTA
TCCTACCCGAAGGTGCACTACGTTAACGACTCGGAGAGAGGCGTGGTGTG
GGAGGAGGTGATCATCATGCTGCCGGAGCACGCCAACATGATCTTCCTCT
CGGCTACGACTCCCAACACCGTGGAGTTCTGCGACTGGATAGGCCGCACA
AAGCGCAAGCCGGTAAGAACCTTGGACCTTGGAACGTGATGCATTACATA
CCCGCCGAAATCCAACTTGCAGGAAGAGCACATGTGTCTTGTGAGCGGTG
CGTAGACTTCCGCATGCAGGCTACACAGCTCACGTAGCAGGTGTTCGCTG
GCCTCTTCCATTTATTGTTCCATATTCGGCGACGCTGATTGGTTCCGCGT
GCGCACCTGTGTCGGAATGCGTCATGACTCAGCTATGTAACACGTGCGTG
TCTGTGTGTGTTTGTGCTTGGTTACCCAACGCTGAAGGTCCACGTGATCA
CGACAACGTATCGACCAGTTCCGCTGGAACACCACCTCTTGGCGGGGAAC
GAGCTGCACCCGGTGAGAGCAACCTTCACGTTGCCACCCCCCACCGACCG
TTTTTTTTTTTCCACCATAAGGGTCCTGTATGCACTCGGTCGCCGTCAAG
GCATACCGGCAGGAGCCAAACCTTTGTTGGTCCACTGGGATGTCTGCTGC
GCTCGCACCACGTAATTCACAACGTTGGACCTTCGGGCGGGCAGAGCTGC
CCAGCTAGCTAGGTTTCGATCAGTGTGTAGTGTGAAATGCGCATTCTCGG
CGAGTGGGAGGAAAGGGTGGATTATTTTGCGCTGGCGGTTCGCGAAGGCG
TTCTTCGTCTGGTTGGACCAAGTGTGCTCCCTTCGTGGATCTTGCGGCTT
CCCCTGCCTGTATTTTGCTGCGACAGCAGTAACGAACGATGATAACGCTG
TTTCGACAACAGTCACGTTGCGTTGCGCAGCTGGTCGGTCTGCCTGAAAC
CGCGTGCATTAACGATGAAAGGATAAGGATTGTCTACGCGTGTTTACCGG
GTGCCCCCCCCCCCCCCCTTCACACGCACACCCTCCTCTTAGATCATGGA
CAACTTAGGCAAGTTCGAGTCGAACGGGTACAACGCAGCCGCCGCGATGC
TCATGAGCAAGGAGGACAAGAAGGCCGCAGCGGGACGCGGAGGCC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14108:687..3931+

>mRNA_Ecto-sp13_S_contig14108.3208.1 ID=mRNA_Ecto-sp13_S_contig14108.3208.1|Name=mRNA_Ecto-sp13_S_contig14108.3208.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=834bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14108:687..3931+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCACCGCCGACAAGCCCACGGGGGGCGGCGGGGGCTCGGCTGCGAAGAA
CGGCGGCGGCCGCGGCCGCGGCGGCGGTGGTGTCAAGTGGGCTGTCACCG
AGCTGCTGGACGTGTCGGACTTCGACGCGCTGGTGCCTCGCCCGGCACAC
CGGTTCCCTTTCACCCTGGACGGTTTCCAGAAGCAGGCTGTGGCTAGGTT
AGAGCGAGCGGAGTGCGTGTTCGTGTCCGCCCACACCTCGGCGGGCAAGA
CGGTCGTGGCGGAGTACGCCATTGCCATGGCGCAGCAGCACATGACCCGA
GCCATCTACACCAGCCCAATCAAGGCCCTCTCCAACCAGAAGTACAGAGA
CTTCAAGACTCGGTTCGGAGACGTGGGTCTCATCACGGGAGACGTGTCGA
TCAACCCAGAGGCTTCCTGCCTCATCATGACGACCGAGATTCTTCGGTCG
ATGCTCTACAGGGGGGCCGACCTCATTCGGGATATCGAGTGGGTTATTTT
CGACGAGGTGCACTACGTTAACGACTCGGAGAGAGGCGTGGTGTGGGAGG
AGGTGATCATCATGCTGCCGGAGCACGCCAACATGATCTTCCTCTCGGCT
ACGACTCCCAACACCGTGGAGTTCTGCGACTGGATAGGCCGCACAAAGCG
CAAGCCGGTCCACGTGATCACGACAACGTATCGACCAGTTCCGCTGGAAC
ACCACCTCTTGGCGGGGAACGAGCTGCACCCGATCATGGACAACTTAGGC
AAGTTCGAGTCGAACGGGTACAACGCAGCCGCCGCGATGCTCATGAGCAA
GGAGGACAAGAAGGCCGCAGCGGGACGCGGAGGC